HEADER OXIDOREDUCTASE 06-DEC-16 5U55 TITLE PSF4 IN COMPLEX WITH MN2+ AND (S)-2-HPP COMPND MOL_ID: 1; COMPND 2 MOLECULE: (S)-2-HYDROXYPROPYLPHOSPHONIC ACID EPOXIDASE; COMPND 3 CHAIN: A, B, C, D; COMPND 4 SYNONYM: HYDROXYPROPYLPHOSPHONATE EPOXIDASE,PS-HPPE; COMPND 5 EC: 1.11.1.23; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: PSEUDOMONAS SYRINGAE; SOURCE 3 ORGANISM_TAXID: 317; SOURCE 4 GENE: HPPE; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS FOSFOMYCIN, EPOXIDASE, OXIDASE, OXIDOREDUCTASE EXPDTA X-RAY DIFFRACTION AUTHOR J.R.CHEKAN,S.K.NAIR REVDAT 5 06-MAR-24 5U55 1 REMARK LINK REVDAT 4 01-JAN-20 5U55 1 REMARK REVDAT 3 20-SEP-17 5U55 1 REMARK REVDAT 2 01-MAR-17 5U55 1 JRNL REVDAT 1 04-JAN-17 5U55 0 JRNL AUTH P.OLIVARES,E.C.ULRICH,J.R.CHEKAN,W.A.VAN DER DONK,S.K.NAIR JRNL TITL CHARACTERIZATION OF TWO LATE-STAGE ENZYMES INVOLVED IN JRNL TITL 2 FOSFOMYCIN BIOSYNTHESIS IN PSEUDOMONADS. JRNL REF ACS CHEM. BIOL. V. 12 456 2017 JRNL REFN ESSN 1554-8937 JRNL PMID 27977135 JRNL DOI 10.1021/ACSCHEMBIO.6B00939 REMARK 2 REMARK 2 RESOLUTION. 2.45 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0073 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.45 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 84.11 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 3 NUMBER OF REFLECTIONS : 29047 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.207 REMARK 3 R VALUE (WORKING SET) : 0.205 REMARK 3 FREE R VALUE : 0.253 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.900 REMARK 3 FREE R VALUE TEST SET COUNT : 1488 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.45 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.51 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2096 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 100.0 REMARK 3 BIN R VALUE (WORKING SET) : 0.3200 REMARK 3 BIN FREE R VALUE SET COUNT : 97 REMARK 3 BIN FREE R VALUE : 0.3720 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 5891 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 36 REMARK 3 SOLVENT ATOMS : 228 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 48.27 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 3.10000 REMARK 3 B22 (A**2) : 0.12000 REMARK 3 B33 (A**2) : -3.22000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.609 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.290 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.226 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 10.392 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.944 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.910 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 6064 ; 0.012 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 5730 ; 0.007 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 8225 ; 1.518 ; 1.949 REMARK 3 BOND ANGLES OTHERS (DEGREES): 13106 ; 1.215 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 749 ; 6.608 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 324 ;37.870 ;24.012 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 1002 ;15.553 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 49 ;16.384 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 906 ; 0.088 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 7016 ; 0.008 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 1477 ; 0.007 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2987 ; 3.871 ; 4.632 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 2986 ; 3.870 ; 4.632 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 3730 ; 5.942 ; 6.944 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 3731 ; 5.942 ; 6.944 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 3077 ; 4.071 ; 5.034 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 3078 ; 4.070 ; 5.034 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 4493 ; 6.490 ; 7.376 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): 6709 ; 9.078 ;36.423 REMARK 3 LONG RANGE B OTHER ATOMS (A**2): 6667 ; 9.075 ;36.416 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NCS TYPE: LOCAL REMARK 3 NUMBER OF DIFFERENT NCS PAIRS : 6 REMARK 3 GROUP CHAIN1 RANGE CHAIN2 RANGE COUNT RMS WEIGHT REMARK 3 1 A 5 189 B 5 189 10803 0.07 0.05 REMARK 3 2 A 5 189 C 5 189 10848 0.07 0.05 REMARK 3 3 A 5 189 D 5 189 10647 0.09 0.05 REMARK 3 4 B 5 190 C 5 190 10881 0.07 0.05 REMARK 3 5 B 5 190 D 5 190 10578 0.09 0.05 REMARK 3 6 C 5 190 D 5 190 10577 0.09 0.05 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 5U55 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 07-DEC-16. REMARK 100 THE DEPOSITION ID IS D_1000225348. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 23-FEB-14 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 21-ID-F REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97872 REMARK 200 MONOCHROMATOR : C(111) REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 225 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AUTOPROC REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 30592 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.450 REMARK 200 RESOLUTION RANGE LOW (A) : 84.110 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 6.900 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 18.9000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.45 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.46 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.7 REMARK 200 DATA REDUNDANCY IN SHELL : 7.20 REMARK 200 R MERGE FOR SHELL (I) : 0.89500 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.100 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 47.84 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.36 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 20% W/V POLYETHYLENE GLYCOL 3350 0.1 M REMARK 280 POTASSIUM CITRATE 12 MG/ML PSF4, VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 282K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 28.14500 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 64.44350 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 55.50250 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 64.44350 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 28.14500 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 55.50250 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 14570 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 31750 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -96.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 ASP A 2 REMARK 465 VAL A 3 REMARK 465 MET B 1 REMARK 465 ASP B 2 REMARK 465 VAL B 3 REMARK 465 ARG B 4 REMARK 465 MET C 1 REMARK 465 ASP C 2 REMARK 465 VAL C 3 REMARK 465 ARG C 4 REMARK 465 MET D 1 REMARK 465 ASP D 2 REMARK 465 VAL D 3 REMARK 465 ARG D 4 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OD2 ASP B 29 O HOH B 401 1.97 REMARK 500 OE2 GLU D 159 O HOH D 401 2.00 REMARK 500 NH1 ARG D 144 OE1 GLU D 154 2.10 REMARK 500 NH1 ARG A 144 OE1 GLU A 154 2.11 REMARK 500 NH1 ARG C 144 OE1 GLU C 154 2.11 REMARK 500 NH1 ARG B 144 OE1 GLU B 154 2.11 REMARK 500 OG SER B 116 O HOH B 402 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 LEU B 166 CA - CB - CG ANGL. DEV. = 17.8 DEGREES REMARK 500 ASP D 69 CB - CG - OD1 ANGL. DEV. = 5.8 DEGREES REMARK 500 ARG D 111 NE - CZ - NH1 ANGL. DEV. = 3.1 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 29 38.38 -91.19 REMARK 500 ASP A 33 -160.96 -110.33 REMARK 500 ARG A 87 -63.80 -99.57 REMARK 500 LEU A 98 -158.64 -85.87 REMARK 500 ASP A 104 83.79 -150.95 REMARK 500 ASP A 117 -168.41 -169.99 REMARK 500 ASP B 33 -160.12 -118.23 REMARK 500 LEU B 98 -157.87 -86.33 REMARK 500 ASP B 117 -168.72 -169.70 REMARK 500 ASP C 29 38.85 -98.82 REMARK 500 ASP C 33 -159.93 -117.92 REMARK 500 LEU C 98 -159.26 -83.86 REMARK 500 ASP C 117 -170.17 -170.08 REMARK 500 ASP D 33 -168.44 -112.87 REMARK 500 LEU D 98 -157.31 -86.76 REMARK 500 ASP D 117 -168.22 -169.25 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MN A 301 MN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 128 NE2 REMARK 620 2 GLU A 132 OE1 86.6 REMARK 620 3 HIS A 171 NE2 97.2 85.1 REMARK 620 4 S0H A 302 O6 174.4 90.2 87.1 REMARK 620 5 S0H A 302 O13 95.0 163.2 111.2 86.8 REMARK 620 6 HOH A 419 O 89.0 82.9 166.1 86.1 80.4 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MN B 301 MN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS B 128 NE2 REMARK 620 2 GLU B 132 OE1 85.8 REMARK 620 3 HIS B 171 NE2 102.3 90.6 REMARK 620 4 S0H B 302 O15 91.8 156.4 112.8 REMARK 620 5 S0H B 302 O6 173.5 88.2 80.3 92.8 REMARK 620 6 HOH B 407 O 83.2 90.4 174.4 66.1 94.3 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MN C 301 MN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS C 128 NE2 REMARK 620 2 GLU C 132 OE1 88.3 REMARK 620 3 HIS C 171 NE2 96.2 81.3 REMARK 620 4 S0H C 302 O13 94.1 172.1 105.8 REMARK 620 5 S0H C 302 O6 174.0 86.1 81.1 91.7 REMARK 620 6 HOH C 425 O 100.2 88.2 160.3 84.0 81.6 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MN D 301 MN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS D 128 NE2 REMARK 620 2 GLU D 132 OE2 82.7 REMARK 620 3 HIS D 171 NE2 95.2 85.2 REMARK 620 4 S0H D 302 O14 98.5 157.4 117.0 REMARK 620 5 S0H D 302 O6 170.8 88.1 83.5 90.1 REMARK 620 N 1 2 3 4 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MN A 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue S0H A 302 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MN B 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue S0H B 302 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MN C 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue S0H C 302 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MN D 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue S0H D 302 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 5U57 RELATED DB: PDB REMARK 900 RELATED ID: 5U58 RELATED DB: PDB REMARK 900 RELATED ID: 5U5D RELATED DB: PDB DBREF 5U55 A 1 190 UNP Q9JN69 HPPE_PSESX 1 190 DBREF 5U55 B 1 190 UNP Q9JN69 HPPE_PSESX 1 190 DBREF 5U55 C 1 190 UNP Q9JN69 HPPE_PSESX 1 190 DBREF 5U55 D 1 190 UNP Q9JN69 HPPE_PSESX 1 190 SEQRES 1 A 190 MET ASP VAL ARG THR LEU ALA VAL GLY LYS ALA HIS LEU SEQRES 2 A 190 GLU ALA LEU LEU ALA THR ARG LYS MET THR LEU GLU HIS SEQRES 3 A 190 LEU GLN ASP VAL ARG HIS ASP ALA THR GLN VAL TYR PHE SEQRES 4 A 190 ASP GLY LEU GLU HIS LEU GLN ASN VAL ALA GLN TYR LEU SEQRES 5 A 190 ALA ILE PRO LEU SER GLU PHE PHE VAL GLY GLN THR GLN SEQRES 6 A 190 SER ASP LEU ASP ASP GLY VAL LYS ILE ALA ARG ARG ASN SEQRES 7 A 190 GLY GLY PHE LYS ARG GLU GLU ILE ARG GLY GLY VAL HIS SEQRES 8 A 190 TYR TYR THR TYR GLU HIS LEU VAL THR THR ASN GLN ASP SEQRES 9 A 190 PRO GLY LEU MET ALA LEU ARG LEU ASP LEU HIS SER ASP SEQRES 10 A 190 ASP GLU GLN PRO LEU ARG LEU ASN GLY GLY HIS GLY SER SEQRES 11 A 190 ARG GLU ILE VAL TYR VAL THR ARG GLY ALA VAL ARG VAL SEQRES 12 A 190 ARG TRP VAL GLY ASP ASN ASP GLU LEU LYS GLU ASP VAL SEQRES 13 A 190 LEU ASN GLU GLY ASP SER ILE PHE ILE LEU PRO ASN VAL SEQRES 14 A 190 PRO HIS SER PHE THR ASN HIS VAL GLY GLY ALA LYS SER SEQRES 15 A 190 GLU ILE ILE ALA ILE ASN TYR GLY SEQRES 1 B 190 MET ASP VAL ARG THR LEU ALA VAL GLY LYS ALA HIS LEU SEQRES 2 B 190 GLU ALA LEU LEU ALA THR ARG LYS MET THR LEU GLU HIS SEQRES 3 B 190 LEU GLN ASP VAL ARG HIS ASP ALA THR GLN VAL TYR PHE SEQRES 4 B 190 ASP GLY LEU GLU HIS LEU GLN ASN VAL ALA GLN TYR LEU SEQRES 5 B 190 ALA ILE PRO LEU SER GLU PHE PHE VAL GLY GLN THR GLN SEQRES 6 B 190 SER ASP LEU ASP ASP GLY VAL LYS ILE ALA ARG ARG ASN SEQRES 7 B 190 GLY GLY PHE LYS ARG GLU GLU ILE ARG GLY GLY VAL HIS SEQRES 8 B 190 TYR TYR THR TYR GLU HIS LEU VAL THR THR ASN GLN ASP SEQRES 9 B 190 PRO GLY LEU MET ALA LEU ARG LEU ASP LEU HIS SER ASP SEQRES 10 B 190 ASP GLU GLN PRO LEU ARG LEU ASN GLY GLY HIS GLY SER SEQRES 11 B 190 ARG GLU ILE VAL TYR VAL THR ARG GLY ALA VAL ARG VAL SEQRES 12 B 190 ARG TRP VAL GLY ASP ASN ASP GLU LEU LYS GLU ASP VAL SEQRES 13 B 190 LEU ASN GLU GLY ASP SER ILE PHE ILE LEU PRO ASN VAL SEQRES 14 B 190 PRO HIS SER PHE THR ASN HIS VAL GLY GLY ALA LYS SER SEQRES 15 B 190 GLU ILE ILE ALA ILE ASN TYR GLY SEQRES 1 C 190 MET ASP VAL ARG THR LEU ALA VAL GLY LYS ALA HIS LEU SEQRES 2 C 190 GLU ALA LEU LEU ALA THR ARG LYS MET THR LEU GLU HIS SEQRES 3 C 190 LEU GLN ASP VAL ARG HIS ASP ALA THR GLN VAL TYR PHE SEQRES 4 C 190 ASP GLY LEU GLU HIS LEU GLN ASN VAL ALA GLN TYR LEU SEQRES 5 C 190 ALA ILE PRO LEU SER GLU PHE PHE VAL GLY GLN THR GLN SEQRES 6 C 190 SER ASP LEU ASP ASP GLY VAL LYS ILE ALA ARG ARG ASN SEQRES 7 C 190 GLY GLY PHE LYS ARG GLU GLU ILE ARG GLY GLY VAL HIS SEQRES 8 C 190 TYR TYR THR TYR GLU HIS LEU VAL THR THR ASN GLN ASP SEQRES 9 C 190 PRO GLY LEU MET ALA LEU ARG LEU ASP LEU HIS SER ASP SEQRES 10 C 190 ASP GLU GLN PRO LEU ARG LEU ASN GLY GLY HIS GLY SER SEQRES 11 C 190 ARG GLU ILE VAL TYR VAL THR ARG GLY ALA VAL ARG VAL SEQRES 12 C 190 ARG TRP VAL GLY ASP ASN ASP GLU LEU LYS GLU ASP VAL SEQRES 13 C 190 LEU ASN GLU GLY ASP SER ILE PHE ILE LEU PRO ASN VAL SEQRES 14 C 190 PRO HIS SER PHE THR ASN HIS VAL GLY GLY ALA LYS SER SEQRES 15 C 190 GLU ILE ILE ALA ILE ASN TYR GLY SEQRES 1 D 190 MET ASP VAL ARG THR LEU ALA VAL GLY LYS ALA HIS LEU SEQRES 2 D 190 GLU ALA LEU LEU ALA THR ARG LYS MET THR LEU GLU HIS SEQRES 3 D 190 LEU GLN ASP VAL ARG HIS ASP ALA THR GLN VAL TYR PHE SEQRES 4 D 190 ASP GLY LEU GLU HIS LEU GLN ASN VAL ALA GLN TYR LEU SEQRES 5 D 190 ALA ILE PRO LEU SER GLU PHE PHE VAL GLY GLN THR GLN SEQRES 6 D 190 SER ASP LEU ASP ASP GLY VAL LYS ILE ALA ARG ARG ASN SEQRES 7 D 190 GLY GLY PHE LYS ARG GLU GLU ILE ARG GLY GLY VAL HIS SEQRES 8 D 190 TYR TYR THR TYR GLU HIS LEU VAL THR THR ASN GLN ASP SEQRES 9 D 190 PRO GLY LEU MET ALA LEU ARG LEU ASP LEU HIS SER ASP SEQRES 10 D 190 ASP GLU GLN PRO LEU ARG LEU ASN GLY GLY HIS GLY SER SEQRES 11 D 190 ARG GLU ILE VAL TYR VAL THR ARG GLY ALA VAL ARG VAL SEQRES 12 D 190 ARG TRP VAL GLY ASP ASN ASP GLU LEU LYS GLU ASP VAL SEQRES 13 D 190 LEU ASN GLU GLY ASP SER ILE PHE ILE LEU PRO ASN VAL SEQRES 14 D 190 PRO HIS SER PHE THR ASN HIS VAL GLY GLY ALA LYS SER SEQRES 15 D 190 GLU ILE ILE ALA ILE ASN TYR GLY HET MN A 301 1 HET S0H A 302 8 HET MN B 301 1 HET S0H B 302 8 HET MN C 301 1 HET S0H C 302 8 HET MN D 301 1 HET S0H D 302 8 HETNAM MN MANGANESE (II) ION HETNAM S0H (S)-2-HYDROXYPROPYLPHOSPHONIC ACID FORMUL 5 MN 4(MN 2+) FORMUL 6 S0H 4(C3 H9 O4 P) FORMUL 13 HOH *228(H2 O) HELIX 1 AA1 LYS A 10 ARG A 20 1 11 HELIX 2 AA2 THR A 23 LEU A 27 5 5 HELIX 3 AA3 GLY A 41 ALA A 53 1 13 HELIX 4 AA4 PRO A 55 PHE A 60 5 6 HELIX 5 AA5 ASP A 148 ASP A 150 5 3 HELIX 6 AA6 LYS B 10 ARG B 20 1 11 HELIX 7 AA7 THR B 23 LEU B 27 5 5 HELIX 8 AA8 ASP B 40 ALA B 53 1 14 HELIX 9 AA9 PRO B 55 PHE B 60 5 6 HELIX 10 AB1 ASP B 148 ASP B 150 5 3 HELIX 11 AB2 LYS C 10 ARG C 20 1 11 HELIX 12 AB3 THR C 23 LEU C 27 5 5 HELIX 13 AB4 ASP C 40 LEU C 52 1 13 HELIX 14 AB5 PRO C 55 PHE C 60 5 6 HELIX 15 AB6 ASP C 148 ASP C 150 5 3 HELIX 16 AB7 LYS D 10 ARG D 20 1 11 HELIX 17 AB8 THR D 23 LEU D 27 5 5 HELIX 18 AB9 ASP D 40 ALA D 53 1 14 HELIX 19 AC1 PRO D 55 PHE D 60 5 6 HELIX 20 AC2 ASP D 148 ASP D 150 5 3 SHEET 1 AA1 3 LEU A 6 GLY A 9 0 SHEET 2 AA1 3 GLN A 36 PHE A 39 -1 O PHE A 39 N LEU A 6 SHEET 3 AA1 3 ARG A 31 HIS A 32 -1 N ARG A 31 O TYR A 38 SHEET 1 AA2 7 VAL A 72 ALA A 75 0 SHEET 2 AA2 7 SER C 162 ILE C 165 -1 O SER C 162 N ALA A 75 SHEET 3 AA2 7 ARG C 131 ARG C 138 -1 N GLU C 132 O ILE C 165 SHEET 4 AA2 7 GLU C 183 TYR C 189 -1 O ILE C 185 N TYR C 135 SHEET 5 AA2 7 MET C 108 LEU C 114 -1 N LEU C 110 O ALA C 186 SHEET 6 AA2 7 VAL C 90 HIS C 97 -1 N GLU C 96 O ARG C 111 SHEET 7 AA2 7 LYS C 82 ARG C 87 -1 N GLU C 85 O TYR C 93 SHEET 1 AA3 7 LYS A 82 ILE A 86 0 SHEET 2 AA3 7 HIS A 91 HIS A 97 -1 O TYR A 95 N ARG A 83 SHEET 3 AA3 7 MET A 108 LEU A 114 -1 O ARG A 111 N GLU A 96 SHEET 4 AA3 7 GLU A 183 TYR A 189 -1 O ALA A 186 N LEU A 110 SHEET 5 AA3 7 ARG A 131 ARG A 138 -1 N ILE A 133 O ILE A 187 SHEET 6 AA3 7 SER A 162 ILE A 165 -1 O ILE A 165 N GLU A 132 SHEET 7 AA3 7 VAL C 72 ALA C 75 -1 O LYS C 73 N PHE A 164 SHEET 1 AA4 3 LEU A 152 ASN A 158 0 SHEET 2 AA4 3 ALA A 140 VAL A 146 -1 N TRP A 145 O LYS A 153 SHEET 3 AA4 3 HIS A 171 ASN A 175 -1 O THR A 174 N ARG A 142 SHEET 1 AA5 3 LEU B 6 GLY B 9 0 SHEET 2 AA5 3 GLN B 36 PHE B 39 -1 O PHE B 39 N LEU B 6 SHEET 3 AA5 3 ARG B 31 HIS B 32 -1 N ARG B 31 O TYR B 38 SHEET 1 AA6 7 VAL B 72 ALA B 75 0 SHEET 2 AA6 7 SER D 162 ILE D 165 -1 O PHE D 164 N LYS B 73 SHEET 3 AA6 7 ARG D 131 ARG D 138 -1 N GLU D 132 O ILE D 165 SHEET 4 AA6 7 GLU D 183 TYR D 189 -1 O ILE D 185 N TYR D 135 SHEET 5 AA6 7 MET D 108 LEU D 114 -1 N LEU D 110 O ALA D 186 SHEET 6 AA6 7 VAL D 90 HIS D 97 -1 N GLU D 96 O ARG D 111 SHEET 7 AA6 7 LYS D 82 ARG D 87 -1 N ARG D 83 O TYR D 95 SHEET 1 AA7 7 LYS B 82 ARG B 87 0 SHEET 2 AA7 7 VAL B 90 HIS B 97 -1 O TYR B 93 N GLU B 85 SHEET 3 AA7 7 MET B 108 LEU B 114 -1 O ARG B 111 N GLU B 96 SHEET 4 AA7 7 GLU B 183 TYR B 189 -1 O ALA B 186 N LEU B 110 SHEET 5 AA7 7 ARG B 131 ARG B 138 -1 N ILE B 133 O ILE B 187 SHEET 6 AA7 7 SER B 162 ILE B 165 -1 O ILE B 165 N GLU B 132 SHEET 7 AA7 7 VAL D 72 ALA D 75 -1 O ALA D 75 N SER B 162 SHEET 1 AA8 3 LEU B 152 ASN B 158 0 SHEET 2 AA8 3 ALA B 140 VAL B 146 -1 N TRP B 145 O LYS B 153 SHEET 3 AA8 3 HIS B 171 ASN B 175 -1 O THR B 174 N ARG B 142 SHEET 1 AA9 3 LEU C 6 GLY C 9 0 SHEET 2 AA9 3 GLN C 36 PHE C 39 -1 O PHE C 39 N LEU C 6 SHEET 3 AA9 3 ARG C 31 HIS C 32 -1 N ARG C 31 O TYR C 38 SHEET 1 AB1 3 LEU C 152 ASN C 158 0 SHEET 2 AB1 3 ALA C 140 VAL C 146 -1 N TRP C 145 O LYS C 153 SHEET 3 AB1 3 HIS C 171 ASN C 175 -1 O THR C 174 N ARG C 142 SHEET 1 AB2 3 LEU D 6 GLY D 9 0 SHEET 2 AB2 3 GLN D 36 PHE D 39 -1 O PHE D 39 N LEU D 6 SHEET 3 AB2 3 ARG D 31 HIS D 32 -1 N ARG D 31 O TYR D 38 SHEET 1 AB3 3 LEU D 152 ASN D 158 0 SHEET 2 AB3 3 ALA D 140 VAL D 146 -1 N TRP D 145 O LYS D 153 SHEET 3 AB3 3 HIS D 171 ASN D 175 -1 O THR D 174 N ARG D 142 LINK NE2 HIS A 128 MN MN A 301 1555 1555 2.32 LINK OE1 GLU A 132 MN MN A 301 1555 1555 2.18 LINK NE2 HIS A 171 MN MN A 301 1555 1555 2.31 LINK MN MN A 301 O6 S0H A 302 1555 1555 2.06 LINK MN MN A 301 O13 S0H A 302 1555 1555 2.18 LINK MN MN A 301 O HOH A 419 1555 1555 1.99 LINK NE2 HIS B 128 MN MN B 301 1555 1555 2.36 LINK OE1 GLU B 132 MN MN B 301 1555 1555 2.20 LINK NE2 HIS B 171 MN MN B 301 1555 1555 2.18 LINK MN MN B 301 O15 S0H B 302 1555 1555 2.14 LINK MN MN B 301 O6 S0H B 302 1555 1555 2.02 LINK MN MN B 301 O HOH B 407 1555 1555 2.32 LINK NE2 HIS C 128 MN MN C 301 1555 1555 2.32 LINK OE1 GLU C 132 MN MN C 301 1555 1555 2.18 LINK NE2 HIS C 171 MN MN C 301 1555 1555 2.43 LINK MN MN C 301 O13 S0H C 302 1555 1555 2.15 LINK MN MN C 301 O6 S0H C 302 1555 1555 1.84 LINK MN MN C 301 O HOH C 425 1555 1555 2.32 LINK NE2 HIS D 128 MN MN D 301 1555 1555 2.36 LINK OE2 GLU D 132 MN MN D 301 1555 1555 2.20 LINK NE2 HIS D 171 MN MN D 301 1555 1555 2.45 LINK MN MN D 301 O14 S0H D 302 1555 1555 2.00 LINK MN MN D 301 O6 S0H D 302 1555 1555 2.02 SITE 1 AC1 5 HIS A 128 GLU A 132 HIS A 171 S0H A 302 SITE 2 AC1 5 HOH A 419 SITE 1 AC2 11 ARG A 87 TYR A 95 ASN A 125 HIS A 128 SITE 2 AC2 11 GLU A 132 HIS A 171 PHE A 173 MN A 301 SITE 3 AC2 11 HOH A 404 HOH A 419 LYS D 21 SITE 1 AC3 5 HIS B 128 GLU B 132 HIS B 171 S0H B 302 SITE 2 AC3 5 HOH B 407 SITE 1 AC4 11 ARG B 87 TYR B 95 ASN B 125 HIS B 128 SITE 2 AC4 11 GLU B 132 HIS B 171 PHE B 173 MN B 301 SITE 3 AC4 11 HOH B 405 HOH B 407 LYS C 21 SITE 1 AC5 5 HIS C 128 GLU C 132 HIS C 171 S0H C 302 SITE 2 AC5 5 HOH C 425 SITE 1 AC6 10 LYS B 21 ARG C 87 TYR C 95 ASN C 125 SITE 2 AC6 10 HIS C 128 GLU C 132 HIS C 171 MN C 301 SITE 3 AC6 10 HOH C 415 HOH C 425 SITE 1 AC7 4 HIS D 128 GLU D 132 HIS D 171 S0H D 302 SITE 1 AC8 9 LYS A 21 ARG D 87 TYR D 95 ASN D 125 SITE 2 AC8 9 HIS D 128 GLU D 132 HIS D 171 MN D 301 SITE 3 AC8 9 HOH D 406 CRYST1 56.290 111.005 128.887 90.00 90.00 90.00 P 21 21 21 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.017765 0.000000 0.000000 0.00000 SCALE2 0.000000 0.009009 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007759 0.00000