HEADER OXIDOREDUCTASE 06-DEC-16 5U57 TITLE PSF4 IN COMPLEX WITH FE2+ AND (S)-2-HPP COMPND MOL_ID: 1; COMPND 2 MOLECULE: (S)-2-HYDROXYPROPYLPHOSPHONIC ACID EPOXIDASE; COMPND 3 CHAIN: A, B, C, D; COMPND 4 SYNONYM: HYDROXYPROPYLPHOSPHONATE EPOXIDASE,PS-HPPE; COMPND 5 EC: 1.11.1.23; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: PSEUDOMONAS SYRINGAE; SOURCE 3 ORGANISM_TAXID: 317; SOURCE 4 GENE: HPPE; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS FOSFOMYCIN, EPOXIDASE, OXIDASE, OXIDOREDUCTASE EXPDTA X-RAY DIFFRACTION AUTHOR J.R.CHEKAN,S.K.NAIR REVDAT 3 06-MAR-24 5U57 1 REMARK LINK REVDAT 2 01-MAR-17 5U57 1 JRNL REVDAT 1 04-JAN-17 5U57 0 JRNL AUTH P.OLIVARES,E.C.ULRICH,J.R.CHEKAN,W.A.VAN DER DONK,S.K.NAIR JRNL TITL CHARACTERIZATION OF TWO LATE-STAGE ENZYMES INVOLVED IN JRNL TITL 2 FOSFOMYCIN BIOSYNTHESIS IN PSEUDOMONADS. JRNL REF ACS CHEM. BIOL. V. 12 456 2017 JRNL REFN ESSN 1554-8937 JRNL PMID 27977135 JRNL DOI 10.1021/ACSCHEMBIO.6B00939 REMARK 2 REMARK 2 RESOLUTION. 2.73 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0073 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.73 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 84.28 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 97.4 REMARK 3 NUMBER OF REFLECTIONS : 19996 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.260 REMARK 3 R VALUE (WORKING SET) : 0.257 REMARK 3 FREE R VALUE : 0.311 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1059 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.73 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.81 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1488 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 100.0 REMARK 3 BIN R VALUE (WORKING SET) : 0.3100 REMARK 3 BIN FREE R VALUE SET COUNT : 77 REMARK 3 BIN FREE R VALUE : 0.3340 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 5859 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 20 REMARK 3 SOLVENT ATOMS : 66 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 59.62 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 2.53000 REMARK 3 B22 (A**2) : 0.51000 REMARK 3 B33 (A**2) : -3.04000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): NULL REMARK 3 ESU BASED ON FREE R VALUE (A): 0.476 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.356 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 18.220 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.840 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.819 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 5999 ; 0.010 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 5683 ; 0.006 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 8128 ; 1.447 ; 1.947 REMARK 3 BOND ANGLES OTHERS (DEGREES): 12991 ; 1.134 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 739 ; 6.691 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 319 ;40.297 ;23.981 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 998 ;15.771 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 49 ;14.631 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 900 ; 0.076 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 6929 ; 0.007 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 1458 ; 0.005 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2965 ; 3.940 ; 5.723 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 2964 ; 3.938 ; 5.723 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 3698 ; 6.157 ; 8.579 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 3699 ; 6.157 ; 8.579 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 3034 ; 4.169 ; 6.192 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 3035 ; 4.168 ; 6.192 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 4430 ; 6.756 ; 9.098 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): 6555 ; 9.974 ;45.141 REMARK 3 LONG RANGE B OTHER ATOMS (A**2): 6548 ; 9.948 ;45.126 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NCS TYPE: LOCAL REMARK 3 NUMBER OF DIFFERENT NCS PAIRS : 6 REMARK 3 GROUP CHAIN1 RANGE CHAIN2 RANGE COUNT RMS WEIGHT REMARK 3 1 A 5 189 B 5 189 10645 0.08 0.05 REMARK 3 2 A 5 189 C 5 189 10726 0.08 0.05 REMARK 3 3 A 1 190 D 1 190 9795 0.10 0.05 REMARK 3 4 B 5 190 C 5 190 10861 0.07 0.05 REMARK 3 5 B 5 190 D 5 190 9718 0.09 0.05 REMARK 3 6 C 5 190 D 5 190 9764 0.09 0.05 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 5U57 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 07-DEC-16. REMARK 100 THE DEPOSITION ID IS D_1000225347. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 29-MAR-14 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 21-ID-F REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97872 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 225 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AUTOPROC REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 21630 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.730 REMARK 200 RESOLUTION RANGE LOW (A) : 84.280 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 5.900 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.10200 REMARK 200 FOR THE DATA SET : 15.7000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.73 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.74 REMARK 200 COMPLETENESS FOR SHELL (%) : 97.6 REMARK 200 DATA REDUNDANCY IN SHELL : 6.00 REMARK 200 R MERGE FOR SHELL (I) : 0.70600 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.200 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 46.69 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.31 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 22% PEG 3,350 0.1 M AMMONIUM CITRATE REMARK 280 10 MG/ML PSF4 CRYSTALLIZED ANAEROBICALLY, VAPOR DIFFUSION, REMARK 280 HANGING DROP, TEMPERATURE 282K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 27.45150 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 64.38100 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 55.73550 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 64.38100 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 27.45150 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 55.73550 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 14510 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 32280 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -131.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET B 1 REMARK 465 ASP B 2 REMARK 465 VAL B 3 REMARK 465 ARG B 4 REMARK 465 MET C 1 REMARK 465 ASP C 2 REMARK 465 VAL C 3 REMARK 465 ARG C 4 REMARK 465 ILE D 86 REMARK 465 ARG D 87 REMARK 465 GLY D 88 REMARK 465 GLY D 89 REMARK 465 VAL D 90 REMARK 465 HIS D 91 REMARK 465 TYR D 92 REMARK 465 ASP D 118 REMARK 465 GLU D 119 REMARK 465 GLN D 120 REMARK 465 PRO D 121 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OD1 ASP C 118 O HOH C 401 1.90 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 OD1 ASN B 149 CB GLU D 25 4555 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ASP A 33 CB - CA - C ANGL. DEV. = -14.1 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 29 50.80 -108.40 REMARK 500 ASP A 33 -159.01 -117.16 REMARK 500 ASP A 104 79.01 -155.72 REMARK 500 ASP B 33 -157.44 -127.18 REMARK 500 ASP B 104 78.42 -155.02 REMARK 500 ASP B 117 -169.99 -167.04 REMARK 500 GLU B 159 119.23 -39.82 REMARK 500 ASP C 29 50.55 -106.27 REMARK 500 ASP C 33 -156.27 -127.40 REMARK 500 ASP C 104 78.85 -155.22 REMARK 500 GLN D 28 -138.06 34.49 REMARK 500 ASP D 33 -156.45 -127.92 REMARK 500 ASP D 104 79.65 -156.93 REMARK 500 SER D 116 -141.57 67.14 REMARK 500 GLU D 159 119.36 -39.59 REMARK 500 ASN D 168 19.85 59.39 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 LEU D 27 GLN D 28 148.85 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 FE A 301 FE REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 128 NE2 REMARK 620 2 GLU A 132 OE1 80.3 REMARK 620 3 HIS A 171 NE2 91.8 85.5 REMARK 620 4 S0H A 302 O6 170.4 95.9 79.1 REMARK 620 5 S0H A 302 O13 92.9 161.0 112.5 93.4 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 FE B 301 FE REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU B 132 OE1 REMARK 620 2 HIS B 171 NE2 76.1 REMARK 620 N 1 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 FE C 301 FE REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS C 128 NE2 REMARK 620 2 GLU C 132 OE1 78.8 REMARK 620 3 HIS C 171 NE2 87.8 78.0 REMARK 620 4 S0H C 302 O6 156.0 98.2 68.4 REMARK 620 5 S0H C 302 O15 100.4 173.7 95.8 79.9 REMARK 620 6 HOH C 406 O 97.7 102.0 174.4 106.2 84.2 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue FE A 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue S0H A 302 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue FE B 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue FE C 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue S0H C 302 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue FE D 301 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 5U55 RELATED DB: PDB REMARK 900 RELATED ID: 5U58 RELATED DB: PDB REMARK 900 RELATED ID: 5U5D RELATED DB: PDB DBREF 5U57 A 1 190 UNP Q9JN69 HPPE_PSESX 1 190 DBREF 5U57 B 1 190 UNP Q9JN69 HPPE_PSESX 1 190 DBREF 5U57 C 1 190 UNP Q9JN69 HPPE_PSESX 1 190 DBREF 5U57 D 1 190 UNP Q9JN69 HPPE_PSESX 1 190 SEQRES 1 A 190 MET ASP VAL ARG THR LEU ALA VAL GLY LYS ALA HIS LEU SEQRES 2 A 190 GLU ALA LEU LEU ALA THR ARG LYS MET THR LEU GLU HIS SEQRES 3 A 190 LEU GLN ASP VAL ARG HIS ASP ALA THR GLN VAL TYR PHE SEQRES 4 A 190 ASP GLY LEU GLU HIS LEU GLN ASN VAL ALA GLN TYR LEU SEQRES 5 A 190 ALA ILE PRO LEU SER GLU PHE PHE VAL GLY GLN THR GLN SEQRES 6 A 190 SER ASP LEU ASP ASP GLY VAL LYS ILE ALA ARG ARG ASN SEQRES 7 A 190 GLY GLY PHE LYS ARG GLU GLU ILE ARG GLY GLY VAL HIS SEQRES 8 A 190 TYR TYR THR TYR GLU HIS LEU VAL THR THR ASN GLN ASP SEQRES 9 A 190 PRO GLY LEU MET ALA LEU ARG LEU ASP LEU HIS SER ASP SEQRES 10 A 190 ASP GLU GLN PRO LEU ARG LEU ASN GLY GLY HIS GLY SER SEQRES 11 A 190 ARG GLU ILE VAL TYR VAL THR ARG GLY ALA VAL ARG VAL SEQRES 12 A 190 ARG TRP VAL GLY ASP ASN ASP GLU LEU LYS GLU ASP VAL SEQRES 13 A 190 LEU ASN GLU GLY ASP SER ILE PHE ILE LEU PRO ASN VAL SEQRES 14 A 190 PRO HIS SER PHE THR ASN HIS VAL GLY GLY ALA LYS SER SEQRES 15 A 190 GLU ILE ILE ALA ILE ASN TYR GLY SEQRES 1 B 190 MET ASP VAL ARG THR LEU ALA VAL GLY LYS ALA HIS LEU SEQRES 2 B 190 GLU ALA LEU LEU ALA THR ARG LYS MET THR LEU GLU HIS SEQRES 3 B 190 LEU GLN ASP VAL ARG HIS ASP ALA THR GLN VAL TYR PHE SEQRES 4 B 190 ASP GLY LEU GLU HIS LEU GLN ASN VAL ALA GLN TYR LEU SEQRES 5 B 190 ALA ILE PRO LEU SER GLU PHE PHE VAL GLY GLN THR GLN SEQRES 6 B 190 SER ASP LEU ASP ASP GLY VAL LYS ILE ALA ARG ARG ASN SEQRES 7 B 190 GLY GLY PHE LYS ARG GLU GLU ILE ARG GLY GLY VAL HIS SEQRES 8 B 190 TYR TYR THR TYR GLU HIS LEU VAL THR THR ASN GLN ASP SEQRES 9 B 190 PRO GLY LEU MET ALA LEU ARG LEU ASP LEU HIS SER ASP SEQRES 10 B 190 ASP GLU GLN PRO LEU ARG LEU ASN GLY GLY HIS GLY SER SEQRES 11 B 190 ARG GLU ILE VAL TYR VAL THR ARG GLY ALA VAL ARG VAL SEQRES 12 B 190 ARG TRP VAL GLY ASP ASN ASP GLU LEU LYS GLU ASP VAL SEQRES 13 B 190 LEU ASN GLU GLY ASP SER ILE PHE ILE LEU PRO ASN VAL SEQRES 14 B 190 PRO HIS SER PHE THR ASN HIS VAL GLY GLY ALA LYS SER SEQRES 15 B 190 GLU ILE ILE ALA ILE ASN TYR GLY SEQRES 1 C 190 MET ASP VAL ARG THR LEU ALA VAL GLY LYS ALA HIS LEU SEQRES 2 C 190 GLU ALA LEU LEU ALA THR ARG LYS MET THR LEU GLU HIS SEQRES 3 C 190 LEU GLN ASP VAL ARG HIS ASP ALA THR GLN VAL TYR PHE SEQRES 4 C 190 ASP GLY LEU GLU HIS LEU GLN ASN VAL ALA GLN TYR LEU SEQRES 5 C 190 ALA ILE PRO LEU SER GLU PHE PHE VAL GLY GLN THR GLN SEQRES 6 C 190 SER ASP LEU ASP ASP GLY VAL LYS ILE ALA ARG ARG ASN SEQRES 7 C 190 GLY GLY PHE LYS ARG GLU GLU ILE ARG GLY GLY VAL HIS SEQRES 8 C 190 TYR TYR THR TYR GLU HIS LEU VAL THR THR ASN GLN ASP SEQRES 9 C 190 PRO GLY LEU MET ALA LEU ARG LEU ASP LEU HIS SER ASP SEQRES 10 C 190 ASP GLU GLN PRO LEU ARG LEU ASN GLY GLY HIS GLY SER SEQRES 11 C 190 ARG GLU ILE VAL TYR VAL THR ARG GLY ALA VAL ARG VAL SEQRES 12 C 190 ARG TRP VAL GLY ASP ASN ASP GLU LEU LYS GLU ASP VAL SEQRES 13 C 190 LEU ASN GLU GLY ASP SER ILE PHE ILE LEU PRO ASN VAL SEQRES 14 C 190 PRO HIS SER PHE THR ASN HIS VAL GLY GLY ALA LYS SER SEQRES 15 C 190 GLU ILE ILE ALA ILE ASN TYR GLY SEQRES 1 D 190 MET ASP VAL ARG THR LEU ALA VAL GLY LYS ALA HIS LEU SEQRES 2 D 190 GLU ALA LEU LEU ALA THR ARG LYS MET THR LEU GLU HIS SEQRES 3 D 190 LEU GLN ASP VAL ARG HIS ASP ALA THR GLN VAL TYR PHE SEQRES 4 D 190 ASP GLY LEU GLU HIS LEU GLN ASN VAL ALA GLN TYR LEU SEQRES 5 D 190 ALA ILE PRO LEU SER GLU PHE PHE VAL GLY GLN THR GLN SEQRES 6 D 190 SER ASP LEU ASP ASP GLY VAL LYS ILE ALA ARG ARG ASN SEQRES 7 D 190 GLY GLY PHE LYS ARG GLU GLU ILE ARG GLY GLY VAL HIS SEQRES 8 D 190 TYR TYR THR TYR GLU HIS LEU VAL THR THR ASN GLN ASP SEQRES 9 D 190 PRO GLY LEU MET ALA LEU ARG LEU ASP LEU HIS SER ASP SEQRES 10 D 190 ASP GLU GLN PRO LEU ARG LEU ASN GLY GLY HIS GLY SER SEQRES 11 D 190 ARG GLU ILE VAL TYR VAL THR ARG GLY ALA VAL ARG VAL SEQRES 12 D 190 ARG TRP VAL GLY ASP ASN ASP GLU LEU LYS GLU ASP VAL SEQRES 13 D 190 LEU ASN GLU GLY ASP SER ILE PHE ILE LEU PRO ASN VAL SEQRES 14 D 190 PRO HIS SER PHE THR ASN HIS VAL GLY GLY ALA LYS SER SEQRES 15 D 190 GLU ILE ILE ALA ILE ASN TYR GLY HET FE A 301 1 HET S0H A 302 8 HET FE B 301 1 HET FE C 301 1 HET S0H C 302 8 HET FE D 301 1 HETNAM FE FE (III) ION HETNAM S0H (S)-2-HYDROXYPROPYLPHOSPHONIC ACID FORMUL 5 FE 4(FE 3+) FORMUL 6 S0H 2(C3 H9 O4 P) FORMUL 11 HOH *66(H2 O) HELIX 1 AA1 LYS A 10 ARG A 20 1 11 HELIX 2 AA2 THR A 23 LEU A 27 5 5 HELIX 3 AA3 GLY A 41 ALA A 53 1 13 HELIX 4 AA4 PRO A 55 VAL A 61 5 7 HELIX 5 AA5 ASP A 148 ASP A 150 5 3 HELIX 6 AA6 LYS B 10 ARG B 20 1 11 HELIX 7 AA7 THR B 23 LEU B 27 5 5 HELIX 8 AA8 ASP B 40 ALA B 53 1 14 HELIX 9 AA9 PRO B 55 VAL B 61 5 7 HELIX 10 AB1 ASP B 148 ASP B 150 5 3 HELIX 11 AB2 LYS C 10 ARG C 20 1 11 HELIX 12 AB3 THR C 23 LEU C 27 5 5 HELIX 13 AB4 ASP C 40 ALA C 53 1 14 HELIX 14 AB5 PRO C 55 VAL C 61 5 7 HELIX 15 AB6 ASP C 148 ASP C 150 5 3 HELIX 16 AB7 LYS D 10 ARG D 20 1 11 HELIX 17 AB8 THR D 23 LEU D 27 5 5 HELIX 18 AB9 ASP D 40 ALA D 53 1 14 HELIX 19 AC1 PRO D 55 VAL D 61 5 7 HELIX 20 AC2 ASP D 148 ASP D 150 5 3 SHEET 1 AA1 3 LEU A 6 GLY A 9 0 SHEET 2 AA1 3 GLN A 36 PHE A 39 -1 O PHE A 39 N LEU A 6 SHEET 3 AA1 3 ARG A 31 HIS A 32 -1 N ARG A 31 O TYR A 38 SHEET 1 AA2 7 VAL A 72 ALA A 75 0 SHEET 2 AA2 7 SER C 162 ILE C 165 -1 O PHE C 164 N LYS A 73 SHEET 3 AA2 7 ARG C 131 ARG C 138 -1 N GLU C 132 O ILE C 165 SHEET 4 AA2 7 GLU C 183 TYR C 189 -1 O ILE C 187 N ILE C 133 SHEET 5 AA2 7 MET C 108 LEU C 114 -1 N LEU C 110 O ALA C 186 SHEET 6 AA2 7 VAL C 90 HIS C 97 -1 N GLU C 96 O ARG C 111 SHEET 7 AA2 7 LYS C 82 ARG C 87 -1 N GLU C 85 O TYR C 92 SHEET 1 AA3 7 LYS A 82 ILE A 86 0 SHEET 2 AA3 7 HIS A 91 HIS A 97 -1 O TYR A 93 N GLU A 85 SHEET 3 AA3 7 MET A 108 LEU A 114 -1 O ARG A 111 N GLU A 96 SHEET 4 AA3 7 GLU A 183 TYR A 189 -1 O ALA A 186 N LEU A 110 SHEET 5 AA3 7 ARG A 131 ARG A 138 -1 N ILE A 133 O ILE A 187 SHEET 6 AA3 7 SER A 162 ILE A 165 -1 O ILE A 165 N GLU A 132 SHEET 7 AA3 7 VAL C 72 ALA C 75 -1 O LYS C 73 N PHE A 164 SHEET 1 AA4 3 LEU A 152 ASN A 158 0 SHEET 2 AA4 3 ALA A 140 VAL A 146 -1 N VAL A 141 O LEU A 157 SHEET 3 AA4 3 HIS A 171 ASN A 175 -1 O THR A 174 N ARG A 142 SHEET 1 AA5 3 LEU B 6 GLY B 9 0 SHEET 2 AA5 3 GLN B 36 PHE B 39 -1 O PHE B 39 N LEU B 6 SHEET 3 AA5 3 ARG B 31 HIS B 32 -1 N ARG B 31 O TYR B 38 SHEET 1 AA6 7 VAL B 72 ALA B 75 0 SHEET 2 AA6 7 SER D 162 ILE D 165 -1 O PHE D 164 N LYS B 73 SHEET 3 AA6 7 ARG D 131 ARG D 138 -1 N GLU D 132 O ILE D 165 SHEET 4 AA6 7 GLU D 183 TYR D 189 -1 O ILE D 187 N ILE D 133 SHEET 5 AA6 7 MET D 108 ASP D 113 -1 N LEU D 110 O ALA D 186 SHEET 6 AA6 7 THR D 94 HIS D 97 -1 N GLU D 96 O ARG D 111 SHEET 7 AA6 7 LYS D 82 ARG D 83 -1 N ARG D 83 O TYR D 95 SHEET 1 AA7 7 LYS B 82 ARG B 87 0 SHEET 2 AA7 7 VAL B 90 HIS B 97 -1 O VAL B 90 N ARG B 87 SHEET 3 AA7 7 MET B 108 LEU B 114 -1 O ARG B 111 N GLU B 96 SHEET 4 AA7 7 GLU B 183 TYR B 189 -1 O ALA B 186 N LEU B 110 SHEET 5 AA7 7 ARG B 131 ARG B 138 -1 N ILE B 133 O ILE B 187 SHEET 6 AA7 7 SER B 162 ILE B 165 -1 O ILE B 165 N GLU B 132 SHEET 7 AA7 7 VAL D 72 ALA D 75 -1 O LYS D 73 N PHE B 164 SHEET 1 AA8 3 LEU B 152 ASN B 158 0 SHEET 2 AA8 3 ALA B 140 VAL B 146 -1 N VAL B 141 O LEU B 157 SHEET 3 AA8 3 HIS B 171 ASN B 175 -1 O THR B 174 N ARG B 142 SHEET 1 AA9 3 LEU C 6 GLY C 9 0 SHEET 2 AA9 3 GLN C 36 PHE C 39 -1 O PHE C 39 N LEU C 6 SHEET 3 AA9 3 ARG C 31 HIS C 32 -1 N ARG C 31 O TYR C 38 SHEET 1 AB1 3 LEU C 152 ASN C 158 0 SHEET 2 AB1 3 ALA C 140 VAL C 146 -1 N VAL C 141 O LEU C 157 SHEET 3 AB1 3 HIS C 171 ASN C 175 -1 O THR C 174 N ARG C 142 SHEET 1 AB2 3 LEU D 6 GLY D 9 0 SHEET 2 AB2 3 GLN D 36 PHE D 39 -1 O PHE D 39 N LEU D 6 SHEET 3 AB2 3 ARG D 31 HIS D 32 -1 N ARG D 31 O TYR D 38 SHEET 1 AB3 3 LEU D 152 ASN D 158 0 SHEET 2 AB3 3 ALA D 140 VAL D 146 -1 N VAL D 141 O LEU D 157 SHEET 3 AB3 3 HIS D 171 ASN D 175 -1 O THR D 174 N ARG D 142 LINK NE2 HIS A 128 FE FE A 301 1555 1555 2.41 LINK OE1 GLU A 132 FE FE A 301 1555 1555 1.98 LINK NE2 HIS A 171 FE FE A 301 1555 1555 2.40 LINK FE FE A 301 O6 S0H A 302 1555 1555 1.98 LINK FE FE A 301 O13 S0H A 302 1555 1555 1.97 LINK OE1 GLU B 132 FE FE B 301 1555 1555 2.43 LINK NE2 HIS B 171 FE FE B 301 1555 1555 2.36 LINK NE2 HIS C 128 FE FE C 301 1555 1555 2.42 LINK OE1 GLU C 132 FE FE C 301 1555 1555 2.07 LINK NE2 HIS C 171 FE FE C 301 1555 1555 2.59 LINK FE FE C 301 O6 S0H C 302 1555 1555 1.93 LINK FE FE C 301 O15 S0H C 302 1555 1555 2.17 LINK FE FE C 301 O HOH C 406 1555 1555 2.66 SITE 1 AC1 4 HIS A 128 GLU A 132 HIS A 171 S0H A 302 SITE 1 AC2 9 ARG A 87 TYR A 95 ASN A 125 HIS A 128 SITE 2 AC2 9 GLU A 132 HIS A 171 PHE A 173 FE A 301 SITE 3 AC2 9 LYS D 21 SITE 1 AC3 5 ASN B 125 HIS B 128 GLU B 132 HIS B 171 SITE 2 AC3 5 HOH C 402 SITE 1 AC4 5 HIS C 128 GLU C 132 HIS C 171 S0H C 302 SITE 2 AC4 5 HOH C 406 SITE 1 AC5 9 LYS B 21 ARG C 87 TYR C 93 TYR C 95 SITE 2 AC5 9 ASN C 125 HIS C 128 GLU C 132 HIS C 171 SITE 3 AC5 9 FE C 301 SITE 1 AC6 3 HIS D 128 GLU D 132 HIS D 171 CRYST1 54.903 111.471 128.762 90.00 90.00 90.00 P 21 21 21 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.018214 0.000000 0.000000 0.00000 SCALE2 0.000000 0.008971 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007766 0.00000