HEADER TRANSCRIPTION/INHIBITOR 06-DEC-16 5U5L TITLE X-RAY CRYSTAL STRUCTURE OF THE PPARGAMMA LIGAND BINDING DOMAIN IN TITLE 2 COMPLEX WITH RIVOGLITAZONE CAVEAT 5U5L 7VA A 501 HAS WRONG CHIRALITY AT ATOM C03 COMPND MOL_ID: 1; COMPND 2 MOLECULE: PEROXISOME PROLIFERATOR-ACTIVATED RECEPTOR GAMMA; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: RESIDUES 233-505; COMPND 5 SYNONYM: PPAR-GAMMA,NUCLEAR RECEPTOR SUBFAMILY 1 GROUP C MEMBER 3; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: PPARG, NR1C3; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET11 KEYWDS NUCLEAR RECEPTOR, PEROXISOME PROLIFERATOR ACTIVATED RECEPTOR, KEYWDS 2 RIVOGLITAZONE, TZD, TRANSCRIPTION-INHIBITOR COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR J.B.BRUNING,H.RAJAPAKSHA,K.WEGENER,H.BHATIA REVDAT 2 04-OCT-23 5U5L 1 REMARK REVDAT 1 23-AUG-17 5U5L 0 JRNL AUTH H.RAJAPAKSHA,H.BHATIA,K.WEGENER,N.PETROVSKY,J.B.BRUNING JRNL TITL X-RAY CRYSTAL STRUCTURE OF RIVOGLITAZONE BOUND TO PPAR GAMMA JRNL TITL 2 AND PPAR SUBTYPE SELECTIVITY OF TZDS. JRNL REF BIOCHIM. BIOPHYS. ACTA V.1861 1981 2017 JRNL REFN ISSN 0006-3002 JRNL PMID 28499821 JRNL DOI 10.1016/J.BBAGEN.2017.05.008 REMARK 2 REMARK 2 RESOLUTION. 2.55 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.10.1_2155 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.55 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 45.64 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.360 REMARK 3 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 3 NUMBER OF REFLECTIONS : 21961 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.191 REMARK 3 R VALUE (WORKING SET) : 0.188 REMARK 3 FREE R VALUE : 0.238 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.970 REMARK 3 FREE R VALUE TEST SET COUNT : 1092 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 45.6459 - 5.0880 1.00 2669 147 0.1824 0.2211 REMARK 3 2 5.0880 - 4.0393 1.00 2636 136 0.1527 0.1979 REMARK 3 3 4.0393 - 3.5289 1.00 2610 131 0.1629 0.2165 REMARK 3 4 3.5289 - 3.2063 1.00 2613 137 0.1959 0.2895 REMARK 3 5 3.2063 - 2.9766 1.00 2591 125 0.2279 0.2709 REMARK 3 6 2.9766 - 2.8011 1.00 2586 134 0.2242 0.2527 REMARK 3 7 2.8011 - 2.6608 1.00 2588 147 0.2423 0.2794 REMARK 3 8 2.6608 - 2.5450 1.00 2576 135 0.2740 0.3317 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.370 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 26.070 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 48.15 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 62.60 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.002 4165 REMARK 3 ANGLE : 0.477 5629 REMARK 3 CHIRALITY : 0.036 656 REMARK 3 PLANARITY : 0.003 715 REMARK 3 DIHEDRAL : 14.741 2552 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 18 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 205 THROUGH 225 ) REMARK 3 ORIGIN FOR THE GROUP (A): -29.2121 13.2089 135.8629 REMARK 3 T TENSOR REMARK 3 T11: 0.2509 T22: 0.6383 REMARK 3 T33: 0.4846 T12: 0.0590 REMARK 3 T13: 0.0228 T23: 0.0685 REMARK 3 L TENSOR REMARK 3 L11: 3.7045 L22: 7.1696 REMARK 3 L33: 1.3088 L12: 2.5984 REMARK 3 L13: 1.9659 L23: 2.4601 REMARK 3 S TENSOR REMARK 3 S11: 0.4350 S12: -0.5571 S13: -0.2609 REMARK 3 S21: 0.2972 S22: -0.7777 S23: 0.4565 REMARK 3 S31: -0.1443 S32: -0.2496 S33: 0.1861 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 226 THROUGH 237 ) REMARK 3 ORIGIN FOR THE GROUP (A): -18.4129 22.0108 121.5494 REMARK 3 T TENSOR REMARK 3 T11: 0.3149 T22: 0.4127 REMARK 3 T33: 0.3852 T12: 0.0473 REMARK 3 T13: 0.0180 T23: 0.0440 REMARK 3 L TENSOR REMARK 3 L11: 3.1803 L22: 3.4343 REMARK 3 L33: 5.3785 L12: 0.2186 REMARK 3 L13: 0.2297 L23: -2.0960 REMARK 3 S TENSOR REMARK 3 S11: 0.1300 S12: 0.8783 S13: 0.0488 REMARK 3 S21: -0.0866 S22: 0.4213 S23: 0.4342 REMARK 3 S31: -0.1961 S32: -0.2057 S33: -0.5712 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 238 THROUGH 251 ) REMARK 3 ORIGIN FOR THE GROUP (A): -12.9961 28.3462 111.6529 REMARK 3 T TENSOR REMARK 3 T11: 0.4649 T22: 0.7115 REMARK 3 T33: 0.3990 T12: -0.0473 REMARK 3 T13: 0.0439 T23: -0.1296 REMARK 3 L TENSOR REMARK 3 L11: 3.2454 L22: 4.3065 REMARK 3 L33: 7.2024 L12: -3.1346 REMARK 3 L13: 0.1248 L23: -2.3259 REMARK 3 S TENSOR REMARK 3 S11: -0.5439 S12: 0.9488 S13: -0.5229 REMARK 3 S21: -0.7823 S22: 0.1960 S23: 0.6441 REMARK 3 S31: -0.7476 S32: -0.2282 S33: -0.2949 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 252 THROUGH 276 ) REMARK 3 ORIGIN FOR THE GROUP (A): -5.3078 40.2171 115.5357 REMARK 3 T TENSOR REMARK 3 T11: 0.9606 T22: 0.8082 REMARK 3 T33: 0.8582 T12: -0.3787 REMARK 3 T13: 0.0011 T23: 0.1278 REMARK 3 L TENSOR REMARK 3 L11: 7.2664 L22: 8.2771 REMARK 3 L33: 3.7101 L12: -1.1019 REMARK 3 L13: 3.8760 L23: 3.0603 REMARK 3 S TENSOR REMARK 3 S11: -0.0389 S12: 0.7393 S13: 0.8264 REMARK 3 S21: -1.1530 S22: -0.1647 S23: 0.5558 REMARK 3 S31: -1.5113 S32: 1.0653 S33: 0.3486 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 277 THROUGH 302 ) REMARK 3 ORIGIN FOR THE GROUP (A): -12.9489 32.5736 133.1306 REMARK 3 T TENSOR REMARK 3 T11: 0.6669 T22: 0.5234 REMARK 3 T33: 0.4146 T12: 0.0054 REMARK 3 T13: -0.0327 T23: 0.0361 REMARK 3 L TENSOR REMARK 3 L11: 4.7800 L22: 7.4136 REMARK 3 L33: 7.0809 L12: 5.3640 REMARK 3 L13: -5.7279 L23: -5.7591 REMARK 3 S TENSOR REMARK 3 S11: 0.0827 S12: 0.6275 S13: 0.4055 REMARK 3 S21: 0.0440 S22: 0.3082 S23: 0.1868 REMARK 3 S31: -1.0383 S32: -0.2625 S33: -0.4596 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 303 THROUGH 377 ) REMARK 3 ORIGIN FOR THE GROUP (A): -8.3100 24.2346 131.2478 REMARK 3 T TENSOR REMARK 3 T11: 0.3773 T22: 0.6250 REMARK 3 T33: 0.4312 T12: 0.0065 REMARK 3 T13: -0.0373 T23: 0.0064 REMARK 3 L TENSOR REMARK 3 L11: 1.8369 L22: 1.4711 REMARK 3 L33: 4.8020 L12: 0.8958 REMARK 3 L13: -2.3849 L23: -1.1763 REMARK 3 S TENSOR REMARK 3 S11: -0.1105 S12: -0.3502 S13: -0.2751 REMARK 3 S21: 0.0584 S22: -0.0978 S23: -0.3445 REMARK 3 S31: -0.3203 S32: 1.0117 S33: 0.1635 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 378 THROUGH 430 ) REMARK 3 ORIGIN FOR THE GROUP (A): -18.3301 10.9729 139.8405 REMARK 3 T TENSOR REMARK 3 T11: 0.3461 T22: 0.4216 REMARK 3 T33: 0.4336 T12: 0.1370 REMARK 3 T13: 0.0818 T23: 0.1068 REMARK 3 L TENSOR REMARK 3 L11: 2.6563 L22: 3.2228 REMARK 3 L33: 6.1440 L12: -0.1391 REMARK 3 L13: 1.2746 L23: 1.1652 REMARK 3 S TENSOR REMARK 3 S11: -0.0863 S12: -0.3058 S13: -0.4513 REMARK 3 S21: 0.2490 S22: 0.2970 S23: -0.3041 REMARK 3 S31: 0.4370 S32: 0.3535 S33: -0.1441 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 431 THROUGH 459 ) REMARK 3 ORIGIN FOR THE GROUP (A): -2.2587 19.8279 137.3556 REMARK 3 T TENSOR REMARK 3 T11: 0.5243 T22: 0.7231 REMARK 3 T33: 0.5872 T12: 0.0893 REMARK 3 T13: -0.1098 T23: 0.0401 REMARK 3 L TENSOR REMARK 3 L11: 6.7670 L22: 4.6253 REMARK 3 L33: 1.6101 L12: 5.2765 REMARK 3 L13: 0.8592 L23: 0.1418 REMARK 3 S TENSOR REMARK 3 S11: 0.0646 S12: -0.5114 S13: -0.1955 REMARK 3 S21: 0.5704 S22: -0.3425 S23: -0.9389 REMARK 3 S31: -0.0795 S32: 0.8210 S33: -0.0524 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 460 THROUGH 476 ) REMARK 3 ORIGIN FOR THE GROUP (A): -4.1203 36.0674 141.4585 REMARK 3 T TENSOR REMARK 3 T11: 0.7212 T22: 0.8980 REMARK 3 T33: 0.5829 T12: -0.0744 REMARK 3 T13: 0.0131 T23: -0.1416 REMARK 3 L TENSOR REMARK 3 L11: 2.5012 L22: 0.3481 REMARK 3 L33: 0.0425 L12: 0.9153 REMARK 3 L13: -0.0960 L23: -0.0463 REMARK 3 S TENSOR REMARK 3 S11: 0.9678 S12: -0.8294 S13: 0.7340 REMARK 3 S21: 1.3084 S22: -0.6575 S23: -0.3776 REMARK 3 S31: -0.4671 S32: 0.3950 S33: -0.4045 REMARK 3 TLS GROUP : 10 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 207 THROUGH 225 ) REMARK 3 ORIGIN FOR THE GROUP (A): -4.4448 -14.3430 143.0566 REMARK 3 T TENSOR REMARK 3 T11: 0.5780 T22: 0.2805 REMARK 3 T33: 0.4994 T12: 0.0620 REMARK 3 T13: 0.0602 T23: 0.0422 REMARK 3 L TENSOR REMARK 3 L11: 6.7507 L22: 3.7926 REMARK 3 L33: 6.8323 L12: 2.3129 REMARK 3 L13: 2.9424 L23: 1.7644 REMARK 3 S TENSOR REMARK 3 S11: 0.3806 S12: 0.2616 S13: -1.1646 REMARK 3 S21: 0.3705 S22: -0.0326 S23: -0.4098 REMARK 3 S31: 0.9583 S32: 0.0236 S33: -0.2671 REMARK 3 TLS GROUP : 11 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 226 THROUGH 251 ) REMARK 3 ORIGIN FOR THE GROUP (A): 5.3956 -4.1715 164.2995 REMARK 3 T TENSOR REMARK 3 T11: 0.8778 T22: 0.7249 REMARK 3 T33: 0.4565 T12: 0.0014 REMARK 3 T13: -0.0104 T23: 0.1568 REMARK 3 L TENSOR REMARK 3 L11: 5.3864 L22: 2.3049 REMARK 3 L33: 5.2356 L12: 1.8470 REMARK 3 L13: 4.4675 L23: 3.1281 REMARK 3 S TENSOR REMARK 3 S11: 0.5889 S12: -1.5277 S13: -0.8646 REMARK 3 S21: 0.5911 S22: -0.4155 S23: 0.1644 REMARK 3 S31: -0.1822 S32: -0.3266 S33: -0.0454 REMARK 3 TLS GROUP : 12 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 252 THROUGH 302 ) REMARK 3 ORIGIN FOR THE GROUP (A): 17.1882 -0.3608 156.3968 REMARK 3 T TENSOR REMARK 3 T11: 0.6105 T22: 0.7631 REMARK 3 T33: 0.4354 T12: 0.0638 REMARK 3 T13: 0.0592 T23: 0.0062 REMARK 3 L TENSOR REMARK 3 L11: 2.8440 L22: 1.2848 REMARK 3 L33: 6.3314 L12: 0.2226 REMARK 3 L13: 0.6345 L23: 1.0004 REMARK 3 S TENSOR REMARK 3 S11: 0.1634 S12: -0.8210 S13: -0.0548 REMARK 3 S21: 0.3867 S22: -0.0089 S23: -0.0268 REMARK 3 S31: -0.1714 S32: 1.0275 S33: -0.2363 REMARK 3 TLS GROUP : 13 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 303 THROUGH 333 ) REMARK 3 ORIGIN FOR THE GROUP (A): 7.0640 -1.8599 139.1681 REMARK 3 T TENSOR REMARK 3 T11: 0.4109 T22: 0.2729 REMARK 3 T33: 0.3995 T12: 0.1323 REMARK 3 T13: 0.0252 T23: -0.0014 REMARK 3 L TENSOR REMARK 3 L11: 2.5733 L22: 0.6603 REMARK 3 L33: 5.0320 L12: 0.6277 REMARK 3 L13: -0.9867 L23: -0.4081 REMARK 3 S TENSOR REMARK 3 S11: -0.0051 S12: 0.0184 S13: -0.2908 REMARK 3 S21: 0.1320 S22: 0.0896 S23: -0.1999 REMARK 3 S31: -0.1411 S32: 0.0567 S33: -0.1047 REMARK 3 TLS GROUP : 14 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 334 THROUGH 364 ) REMARK 3 ORIGIN FOR THE GROUP (A): 9.8363 7.5263 162.3474 REMARK 3 T TENSOR REMARK 3 T11: 0.9559 T22: 0.6377 REMARK 3 T33: 0.3888 T12: 0.0380 REMARK 3 T13: 0.1126 T23: -0.0317 REMARK 3 L TENSOR REMARK 3 L11: 5.1001 L22: 1.8321 REMARK 3 L33: 4.9058 L12: 2.5540 REMARK 3 L13: 0.2183 L23: -0.0715 REMARK 3 S TENSOR REMARK 3 S11: 0.2991 S12: -1.0504 S13: 0.4703 REMARK 3 S21: -0.0467 S22: -0.2780 S23: 0.4239 REMARK 3 S31: -1.0748 S32: 0.3926 S33: -0.0378 REMARK 3 TLS GROUP : 15 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 365 THROUGH 377 ) REMARK 3 ORIGIN FOR THE GROUP (A): -1.2152 7.9916 155.3873 REMARK 3 T TENSOR REMARK 3 T11: 0.7003 T22: 0.4256 REMARK 3 T33: 0.5322 T12: 0.1538 REMARK 3 T13: 0.1756 T23: 0.0496 REMARK 3 L TENSOR REMARK 3 L11: 8.8252 L22: 6.6943 REMARK 3 L33: 8.0625 L12: 3.5528 REMARK 3 L13: 3.7872 L23: 1.7961 REMARK 3 S TENSOR REMARK 3 S11: 0.3035 S12: 0.0092 S13: 0.8310 REMARK 3 S21: 0.3465 S22: -0.3214 S23: 0.6486 REMARK 3 S31: -1.3489 S32: -0.1427 S33: 0.1790 REMARK 3 TLS GROUP : 16 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 378 THROUGH 430 ) REMARK 3 ORIGIN FOR THE GROUP (A): -5.8891 -3.1624 139.6734 REMARK 3 T TENSOR REMARK 3 T11: 0.4431 T22: 0.3889 REMARK 3 T33: 0.5328 T12: 0.1728 REMARK 3 T13: -0.0036 T23: 0.0258 REMARK 3 L TENSOR REMARK 3 L11: 2.0054 L22: 1.8041 REMARK 3 L33: 3.5542 L12: -0.0892 REMARK 3 L13: 0.7939 L23: -2.0031 REMARK 3 S TENSOR REMARK 3 S11: 0.1497 S12: -0.0437 S13: -0.2120 REMARK 3 S21: 0.1317 S22: 0.1297 S23: 0.4367 REMARK 3 S31: -0.2507 S32: -0.5125 S33: -0.2747 REMARK 3 TLS GROUP : 17 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 431 THROUGH 458 ) REMARK 3 ORIGIN FOR THE GROUP (A): 2.6211 10.6106 145.5541 REMARK 3 T TENSOR REMARK 3 T11: 0.6407 T22: 0.5152 REMARK 3 T33: 0.5590 T12: 0.0775 REMARK 3 T13: 0.0512 T23: 0.0857 REMARK 3 L TENSOR REMARK 3 L11: 9.3865 L22: 4.7690 REMARK 3 L33: 3.5147 L12: 4.2343 REMARK 3 L13: 1.3183 L23: -0.0110 REMARK 3 S TENSOR REMARK 3 S11: 0.1297 S12: 0.3153 S13: 1.0787 REMARK 3 S21: 0.4480 S22: 0.0234 S23: 0.3002 REMARK 3 S31: -1.1505 S32: 0.2427 S33: -0.1229 REMARK 3 TLS GROUP : 18 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 459 THROUGH 476 ) REMARK 3 ORIGIN FOR THE GROUP (A): 24.9195 6.2564 146.7849 REMARK 3 T TENSOR REMARK 3 T11: 0.9809 T22: 0.6899 REMARK 3 T33: 0.6869 T12: 0.0704 REMARK 3 T13: 0.0446 T23: -0.1026 REMARK 3 L TENSOR REMARK 3 L11: 8.2583 L22: 1.9212 REMARK 3 L33: 2.0316 L12: -2.0256 REMARK 3 L13: -0.6478 L23: -1.3969 REMARK 3 S TENSOR REMARK 3 S11: -0.8814 S12: -0.0769 S13: 0.8388 REMARK 3 S21: -1.0920 S22: -0.0603 S23: -0.4753 REMARK 3 S31: -0.5405 S32: 0.0268 S33: 0.2316 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5U5L COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 07-DEC-16. REMARK 100 THE DEPOSITION ID IS D_1000225366. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 07-AUG-15 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : AUSTRALIAN SYNCHROTRON REMARK 200 BEAMLINE : MX1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9537 REMARK 200 MONOCHROMATOR : DOUBLE SI WITH SAGITTALY BENT REMARK 200 SECOND CRYSTAL REMARK 200 OPTICS : MIRRORS - SI ANS RH COATINGS REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 210R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS 0.3.11 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 21961 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.550 REMARK 200 RESOLUTION RANGE LOW (A) : 45.900 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 200 DATA REDUNDANCY : 5.000 REMARK 200 R MERGE (I) : 0.08700 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 11.8000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.55 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.66 REMARK 200 COMPLETENESS FOR SHELL (%) : 98.4 REMARK 200 DATA REDUNDANCY IN SHELL : 5.00 REMARK 200 R MERGE FOR SHELL (I) : 0.85700 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER 2.6.1 REMARK 200 STARTING MODEL: 4R06 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 54.27 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.69 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 1M NA CITRATE, PH 8, VAPOR DIFFUSION, REMARK 280 HANGING DROP, TEMPERATURE 289K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 46.69700 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 31.04850 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 46.69700 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 31.04850 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2070 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 23980 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -10.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 2 1.000000 0.000000 0.000000 -46.69700 REMARK 350 BIOMT2 2 0.000000 1.000000 0.000000 31.04850 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 LYS A 263 REMARK 465 PHE A 264 REMARK 465 LYS A 265 REMARK 465 HIS A 266 REMARK 465 ILE A 267 REMARK 465 THR A 268 REMARK 465 PRO A 269 REMARK 465 LEU A 270 REMARK 465 GLN A 271 REMARK 465 GLU A 272 REMARK 465 GLN A 273 REMARK 465 SER A 274 REMARK 465 LYS A 275 REMARK 465 TYR A 477 REMARK 465 ASN B 205 REMARK 465 PRO B 206 REMARK 465 THR B 241 REMARK 465 THR B 242 REMARK 465 ASP B 243 REMARK 465 LYS B 244 REMARK 465 PRO B 269 REMARK 465 LEU B 270 REMARK 465 GLN B 271 REMARK 465 GLU B 272 REMARK 465 GLN B 273 REMARK 465 SER B 274 REMARK 465 LYS B 275 REMARK 465 ASP B 462 REMARK 465 MET B 463 REMARK 465 SER B 464 REMARK 465 LEU B 465 REMARK 465 HIS B 466 REMARK 465 TYR B 477 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ASN A 205 CG OD1 ND2 REMARK 470 LYS A 240 CG CD CE NZ REMARK 470 LYS A 261 CD CE NZ REMARK 470 ILE A 262 CG1 CG2 CD1 REMARK 470 LYS A 457 CG CD CE NZ REMARK 470 THR A 461 OG1 CG2 REMARK 470 LYS B 240 CG CD CE NZ REMARK 470 ASP B 260 CG OD1 OD2 REMARK 470 LYS B 261 CG CD CE NZ REMARK 470 LYS B 263 CG CD CE NZ REMARK 470 GLU B 276 CG CD OE1 OE2 REMARK 470 LYS B 358 CG CD CE NZ REMARK 470 PHE B 363 CG CD1 CD2 CE1 CE2 CZ REMARK 470 ILE B 456 CG1 CG2 CD1 REMARK 470 LYS B 457 CG CD CE NZ REMARK 470 LYS B 458 CG CD CE NZ REMARK 470 THR B 461 OG1 CG2 REMARK 470 LEU B 476 CG CD1 CD2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 PRO A 206 -104.79 -69.41 REMARK 500 THR A 238 -114.04 -72.87 REMARK 500 LYS A 240 9.55 -66.65 REMARK 500 TYR A 250 -7.17 -142.84 REMARK 500 LYS A 261 44.46 -93.60 REMARK 500 ASN A 335 -166.81 -123.44 REMARK 500 LEU A 393 59.57 -90.40 REMARK 500 LEU B 393 47.61 -83.42 REMARK 500 TYR B 473 61.58 -109.07 REMARK 500 ASP B 475 -118.63 -153.05 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue 7VA A 501 DBREF 5U5L A 205 477 UNP P37231 PPARG_HUMAN 233 505 DBREF 5U5L B 205 477 UNP P37231 PPARG_HUMAN 233 505 SEQRES 1 A 273 ASN PRO GLU SER ALA ASP LEU ARG ALA LEU ALA LYS HIS SEQRES 2 A 273 LEU TYR ASP SER TYR ILE LYS SER PHE PRO LEU THR LYS SEQRES 3 A 273 ALA LYS ALA ARG ALA ILE LEU THR GLY LYS THR THR ASP SEQRES 4 A 273 LYS SER PRO PHE VAL ILE TYR ASP MET ASN SER LEU MET SEQRES 5 A 273 MET GLY GLU ASP LYS ILE LYS PHE LYS HIS ILE THR PRO SEQRES 6 A 273 LEU GLN GLU GLN SER LYS GLU VAL ALA ILE ARG ILE PHE SEQRES 7 A 273 GLN GLY CYS GLN PHE ARG SER VAL GLU ALA VAL GLN GLU SEQRES 8 A 273 ILE THR GLU TYR ALA LYS SER ILE PRO GLY PHE VAL ASN SEQRES 9 A 273 LEU ASP LEU ASN ASP GLN VAL THR LEU LEU LYS TYR GLY SEQRES 10 A 273 VAL HIS GLU ILE ILE TYR THR MET LEU ALA SER LEU MET SEQRES 11 A 273 ASN LYS ASP GLY VAL LEU ILE SER GLU GLY GLN GLY PHE SEQRES 12 A 273 MET THR ARG GLU PHE LEU LYS SER LEU ARG LYS PRO PHE SEQRES 13 A 273 GLY ASP PHE MET GLU PRO LYS PHE GLU PHE ALA VAL LYS SEQRES 14 A 273 PHE ASN ALA LEU GLU LEU ASP ASP SER ASP LEU ALA ILE SEQRES 15 A 273 PHE ILE ALA VAL ILE ILE LEU SER GLY ASP ARG PRO GLY SEQRES 16 A 273 LEU LEU ASN VAL LYS PRO ILE GLU ASP ILE GLN ASP ASN SEQRES 17 A 273 LEU LEU GLN ALA LEU GLU LEU GLN LEU LYS LEU ASN HIS SEQRES 18 A 273 PRO GLU SER SER GLN LEU PHE ALA LYS LEU LEU GLN LYS SEQRES 19 A 273 MET THR ASP LEU ARG GLN ILE VAL THR GLU HIS VAL GLN SEQRES 20 A 273 LEU LEU GLN VAL ILE LYS LYS THR GLU THR ASP MET SER SEQRES 21 A 273 LEU HIS PRO LEU LEU GLN GLU ILE TYR LYS ASP LEU TYR SEQRES 1 B 273 ASN PRO GLU SER ALA ASP LEU ARG ALA LEU ALA LYS HIS SEQRES 2 B 273 LEU TYR ASP SER TYR ILE LYS SER PHE PRO LEU THR LYS SEQRES 3 B 273 ALA LYS ALA ARG ALA ILE LEU THR GLY LYS THR THR ASP SEQRES 4 B 273 LYS SER PRO PHE VAL ILE TYR ASP MET ASN SER LEU MET SEQRES 5 B 273 MET GLY GLU ASP LYS ILE LYS PHE LYS HIS ILE THR PRO SEQRES 6 B 273 LEU GLN GLU GLN SER LYS GLU VAL ALA ILE ARG ILE PHE SEQRES 7 B 273 GLN GLY CYS GLN PHE ARG SER VAL GLU ALA VAL GLN GLU SEQRES 8 B 273 ILE THR GLU TYR ALA LYS SER ILE PRO GLY PHE VAL ASN SEQRES 9 B 273 LEU ASP LEU ASN ASP GLN VAL THR LEU LEU LYS TYR GLY SEQRES 10 B 273 VAL HIS GLU ILE ILE TYR THR MET LEU ALA SER LEU MET SEQRES 11 B 273 ASN LYS ASP GLY VAL LEU ILE SER GLU GLY GLN GLY PHE SEQRES 12 B 273 MET THR ARG GLU PHE LEU LYS SER LEU ARG LYS PRO PHE SEQRES 13 B 273 GLY ASP PHE MET GLU PRO LYS PHE GLU PHE ALA VAL LYS SEQRES 14 B 273 PHE ASN ALA LEU GLU LEU ASP ASP SER ASP LEU ALA ILE SEQRES 15 B 273 PHE ILE ALA VAL ILE ILE LEU SER GLY ASP ARG PRO GLY SEQRES 16 B 273 LEU LEU ASN VAL LYS PRO ILE GLU ASP ILE GLN ASP ASN SEQRES 17 B 273 LEU LEU GLN ALA LEU GLU LEU GLN LEU LYS LEU ASN HIS SEQRES 18 B 273 PRO GLU SER SER GLN LEU PHE ALA LYS LEU LEU GLN LYS SEQRES 19 B 273 MET THR ASP LEU ARG GLN ILE VAL THR GLU HIS VAL GLN SEQRES 20 B 273 LEU LEU GLN VAL ILE LYS LYS THR GLU THR ASP MET SER SEQRES 21 B 273 LEU HIS PRO LEU LEU GLN GLU ILE TYR LYS ASP LEU TYR HET 7VA A 501 28 HETNAM 7VA (5S)-5-({4-[(6-METHOXY-1-METHYL-1H-BENZIMIDAZOL-2-YL) HETNAM 2 7VA METHOXY]PHENYL}METHYL)-1,3-THIAZOLIDINE-2,4-DIONE FORMUL 3 7VA C20 H19 N3 O4 S FORMUL 4 HOH *113(H2 O) HELIX 1 AA1 GLU A 207 PHE A 226 1 20 HELIX 2 AA2 THR A 229 THR A 238 1 10 HELIX 3 AA3 ASP A 251 GLU A 259 1 9 HELIX 4 AA4 VAL A 277 SER A 302 1 26 HELIX 5 AA5 ASP A 310 LEU A 333 1 24 HELIX 6 AA6 ARG A 350 SER A 355 1 6 HELIX 7 AA7 PRO A 359 PHE A 363 5 5 HELIX 8 AA8 MET A 364 ALA A 376 1 13 HELIX 9 AA9 ASP A 380 LEU A 393 1 14 HELIX 10 AB1 ASN A 402 HIS A 425 1 24 HELIX 11 AB2 GLN A 430 GLU A 460 1 31 HELIX 12 AB3 HIS A 466 LYS A 474 1 9 HELIX 13 AB4 SER B 208 PHE B 226 1 19 HELIX 14 AB5 THR B 229 LEU B 237 1 9 HELIX 15 AB6 ASP B 251 ILE B 262 1 12 HELIX 16 AB7 VAL B 277 SER B 302 1 26 HELIX 17 AB8 ASP B 310 LEU B 333 1 24 HELIX 18 AB9 ARG B 350 SER B 355 1 6 HELIX 19 AC1 PRO B 359 PHE B 363 5 5 HELIX 20 AC2 MET B 364 ALA B 376 1 13 HELIX 21 AC3 ASP B 380 LEU B 393 1 14 HELIX 22 AC4 ASN B 402 HIS B 425 1 24 HELIX 23 AC5 GLN B 430 LYS B 458 1 29 HELIX 24 AC6 LEU B 468 TYR B 473 1 6 SHEET 1 AA1 3 PHE A 247 ILE A 249 0 SHEET 2 AA1 3 GLY A 346 THR A 349 1 O THR A 349 N ILE A 249 SHEET 3 AA1 3 GLY A 338 ILE A 341 -1 N ILE A 341 O GLY A 346 SHEET 1 AA2 3 PHE B 247 ILE B 249 0 SHEET 2 AA2 3 GLY B 346 THR B 349 1 O THR B 349 N ILE B 249 SHEET 3 AA2 3 GLY B 338 ILE B 341 -1 N ILE B 341 O GLY B 346 CISPEP 1 LYS A 358 PRO A 359 0 -5.87 CISPEP 2 LYS B 358 PRO B 359 0 -1.14 SITE 1 AC1 9 PHE A 282 CYS A 285 GLN A 286 SER A 289 SITE 2 AC1 9 HIS A 323 TYR A 327 ILE A 341 MET A 348 SITE 3 AC1 9 TYR A 473 CRYST1 93.394 62.097 118.470 90.00 102.22 90.00 C 1 2 1 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.010707 0.000000 0.002319 0.00000 SCALE2 0.000000 0.016104 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008637 0.00000