HEADER OXIDOREDUCTASE 09-DEC-16 5U6W TITLE THE CRYSTAL STRUCTURE OF 4-METHYLAMINOBENZOATE-BOUND CYP199A4 COMPND MOL_ID: 1; COMPND 2 MOLECULE: CYTOCHROME P450; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: UNP RESIDUES 18-410; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: RHODOPSEUDOMONAS PALUSTRIS (STRAIN HAA2); SOURCE 3 ORGANISM_TAXID: 316058; SOURCE 4 STRAIN: HAA2; SOURCE 5 GENE: RPB_3613; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS P450, OXIDOREDUCTASE, SUBSTRATE EXPDTA X-RAY DIFFRACTION AUTHOR T.COLEMAN,J.B.BRUNING,S.G.BELL REVDAT 4 04-OCT-23 5U6W 1 REMARK REVDAT 3 01-JAN-20 5U6W 1 REMARK REVDAT 2 26-DEC-18 5U6W 1 JRNL REVDAT 1 13-JUN-18 5U6W 0 JRNL AUTH T.COLEMAN,S.H.WONG,M.N.PODGORSKI,J.B.BRUNING,J.J.DE VOSS, JRNL AUTH 2 S.G.BELL JRNL TITL CYTOCHROME P450 CYP199A4 FROM RHODOPSEUDOMONAS PALUSTRIS JRNL TITL 2 CATALYZES HETEROATOM DEALKYLATIONS, SULFOXIDATION, AND AMIDE JRNL TITL 3 AND CYCLIC HEMIACETAL FORMATION JRNL REF ACS CATALYSIS V. 8 5915 2018 JRNL REFN ESSN 2155-5435 JRNL DOI 10.1021/ACSCATAL.8B00909 REMARK 2 REMARK 2 RESOLUTION. 2.64 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.9_1692 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.64 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 44.34 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.350 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.3 REMARK 3 NUMBER OF REFLECTIONS : 10466 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.226 REMARK 3 R VALUE (WORKING SET) : 0.224 REMARK 3 FREE R VALUE : 0.261 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.020 REMARK 3 FREE R VALUE TEST SET COUNT : 525 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 44.3446 - 4.1962 1.00 2544 142 0.1861 0.2495 REMARK 3 2 4.1962 - 3.3310 1.00 2527 105 0.2056 0.1990 REMARK 3 3 3.3310 - 2.9100 1.00 2460 146 0.2680 0.2987 REMARK 3 4 2.9100 - 2.6440 0.98 2410 132 0.2963 0.3412 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.430 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 26.630 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 33.63 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.005 3154 REMARK 3 ANGLE : 1.223 4307 REMARK 3 CHIRALITY : 0.045 468 REMARK 3 PLANARITY : 0.006 571 REMARK 3 DIHEDRAL : 14.021 1157 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 9 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 17 THROUGH 79 ) REMARK 3 ORIGIN FOR THE GROUP (A): -4.2561 -5.9284 33.6553 REMARK 3 T TENSOR REMARK 3 T11: 0.7955 T22: 0.1637 REMARK 3 T33: 0.1698 T12: -0.0408 REMARK 3 T13: 0.0356 T23: -0.0062 REMARK 3 L TENSOR REMARK 3 L11: 0.6262 L22: 0.3662 REMARK 3 L33: 0.7906 L12: -0.2364 REMARK 3 L13: -0.0164 L23: 0.4177 REMARK 3 S TENSOR REMARK 3 S11: 0.0280 S12: 0.1140 S13: -0.0199 REMARK 3 S21: 0.2885 S22: -0.1722 S23: 0.0246 REMARK 3 S31: -0.0594 S32: 0.0123 S33: -0.1003 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 80 THROUGH 105 ) REMARK 3 ORIGIN FOR THE GROUP (A): -0.5104 10.3978 23.2043 REMARK 3 T TENSOR REMARK 3 T11: 0.6782 T22: 0.2090 REMARK 3 T33: 0.3079 T12: 0.0156 REMARK 3 T13: -0.0019 T23: -0.0219 REMARK 3 L TENSOR REMARK 3 L11: 1.2267 L22: 0.1523 REMARK 3 L33: 2.5194 L12: -0.2399 REMARK 3 L13: -0.4777 L23: 0.5699 REMARK 3 S TENSOR REMARK 3 S11: 0.0886 S12: -0.1425 S13: 0.4478 REMARK 3 S21: -0.0597 S22: -0.0662 S23: 0.1033 REMARK 3 S31: -0.2793 S32: 0.3185 S33: -0.1841 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 106 THROUGH 142 ) REMARK 3 ORIGIN FOR THE GROUP (A): 10.6416 -7.1135 4.2071 REMARK 3 T TENSOR REMARK 3 T11: 0.8301 T22: 0.2423 REMARK 3 T33: 0.2723 T12: -0.0353 REMARK 3 T13: 0.0388 T23: -0.0664 REMARK 3 L TENSOR REMARK 3 L11: 1.3805 L22: 1.0842 REMARK 3 L33: 0.4756 L12: -0.4151 REMARK 3 L13: 0.1228 L23: 0.4173 REMARK 3 S TENSOR REMARK 3 S11: -0.0243 S12: 0.1645 S13: 0.1746 REMARK 3 S21: -0.2582 S22: 0.0925 S23: -0.2003 REMARK 3 S31: -0.0560 S32: 0.0691 S33: -0.1572 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 143 THROUGH 170 ) REMARK 3 ORIGIN FOR THE GROUP (A): 20.0984 -5.6502 11.3166 REMARK 3 T TENSOR REMARK 3 T11: 0.4569 T22: 0.2773 REMARK 3 T33: 0.3784 T12: 0.0098 REMARK 3 T13: 0.0712 T23: -0.0152 REMARK 3 L TENSOR REMARK 3 L11: 1.3709 L22: 2.4831 REMARK 3 L33: 0.9859 L12: -1.0065 REMARK 3 L13: 0.9756 L23: -0.7189 REMARK 3 S TENSOR REMARK 3 S11: -0.0820 S12: -0.0634 S13: 0.3236 REMARK 3 S21: -0.0282 S22: -0.0311 S23: -0.5221 REMARK 3 S31: -0.1970 S32: 0.1347 S33: 0.1331 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 171 THROUGH 219 ) REMARK 3 ORIGIN FOR THE GROUP (A): 14.9247 7.0912 20.0795 REMARK 3 T TENSOR REMARK 3 T11: 0.3071 T22: 0.2935 REMARK 3 T33: 0.3594 T12: -0.0132 REMARK 3 T13: 0.0069 T23: -0.0325 REMARK 3 L TENSOR REMARK 3 L11: 0.8818 L22: 1.6596 REMARK 3 L33: 3.0243 L12: 0.4543 REMARK 3 L13: -1.3704 L23: -1.7799 REMARK 3 S TENSOR REMARK 3 S11: -0.0054 S12: -0.1048 S13: 0.1296 REMARK 3 S21: 0.1510 S22: -0.0877 S23: -0.1682 REMARK 3 S31: -0.2921 S32: 0.1517 S33: 0.1270 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 220 THROUGH 301 ) REMARK 3 ORIGIN FOR THE GROUP (A): 6.2785 -7.3881 13.7323 REMARK 3 T TENSOR REMARK 3 T11: 0.8780 T22: 0.2237 REMARK 3 T33: -0.0921 T12: 0.0006 REMARK 3 T13: 0.0216 T23: -0.0906 REMARK 3 L TENSOR REMARK 3 L11: 0.4932 L22: 0.5747 REMARK 3 L33: 0.8529 L12: -0.2907 REMARK 3 L13: 0.1788 L23: 0.3021 REMARK 3 S TENSOR REMARK 3 S11: -0.0433 S12: 0.0528 S13: -0.2548 REMARK 3 S21: 0.0572 S22: 0.0249 S23: 0.1705 REMARK 3 S31: -0.1656 S32: 0.1039 S33: -0.0593 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 302 THROUGH 336 ) REMARK 3 ORIGIN FOR THE GROUP (A): -9.3472 -6.7893 29.4948 REMARK 3 T TENSOR REMARK 3 T11: 0.1546 T22: 0.2891 REMARK 3 T33: 0.2200 T12: -0.0944 REMARK 3 T13: 0.0641 T23: -0.0237 REMARK 3 L TENSOR REMARK 3 L11: 1.1826 L22: 1.3486 REMARK 3 L33: 1.2788 L12: 0.7422 REMARK 3 L13: 0.6278 L23: -0.4811 REMARK 3 S TENSOR REMARK 3 S11: -0.1496 S12: -0.0329 S13: 0.2229 REMARK 3 S21: 0.2014 S22: -0.0720 S23: 0.2452 REMARK 3 S31: -0.2631 S32: -0.2394 S33: -0.3295 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 337 THROUGH 360 ) REMARK 3 ORIGIN FOR THE GROUP (A): -1.8217 -13.7426 16.6437 REMARK 3 T TENSOR REMARK 3 T11: 0.5974 T22: 0.3116 REMARK 3 T33: 0.1620 T12: 0.0165 REMARK 3 T13: -0.0310 T23: -0.0261 REMARK 3 L TENSOR REMARK 3 L11: 1.5488 L22: 2.9004 REMARK 3 L33: 0.3288 L12: 0.2031 REMARK 3 L13: -0.0461 L23: -0.8027 REMARK 3 S TENSOR REMARK 3 S11: 0.0544 S12: -0.2274 S13: 0.0517 REMARK 3 S21: -0.3810 S22: -0.2115 S23: 0.2513 REMARK 3 S31: 0.5039 S32: -0.1806 S33: 0.0333 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 361 THROUGH 409 ) REMARK 3 ORIGIN FOR THE GROUP (A): 15.3627 -16.2225 17.2091 REMARK 3 T TENSOR REMARK 3 T11: 0.7352 T22: 0.2377 REMARK 3 T33: 0.1993 T12: 0.0347 REMARK 3 T13: 0.0107 T23: -0.0250 REMARK 3 L TENSOR REMARK 3 L11: 0.9542 L22: 0.4431 REMARK 3 L33: 1.0764 L12: 0.0064 REMARK 3 L13: -0.4825 L23: -0.6016 REMARK 3 S TENSOR REMARK 3 S11: 0.0269 S12: -0.2189 S13: -0.0037 REMARK 3 S21: -0.4501 S22: -0.0082 S23: -0.2689 REMARK 3 S31: -0.0180 S32: 0.2169 S33: 0.2838 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5U6W COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 14-DEC-16. REMARK 100 THE DEPOSITION ID IS D_1000225417. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 11-OCT-16 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 5-5.75 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : AUSTRALIAN SYNCHROTRON REMARK 200 BEAMLINE : MX1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9537 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 210R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : AIMLESS 0.5.25 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 10517 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.630 REMARK 200 RESOLUTION RANGE LOW (A) : 44.340 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.6 REMARK 200 DATA REDUNDANCY : 7.400 REMARK 200 R MERGE (I) : 0.25000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 6.9000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.63 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.76 REMARK 200 COMPLETENESS FOR SHELL (%) : 89.4 REMARK 200 DATA REDUNDANCY IN SHELL : 7.00 REMARK 200 R MERGE FOR SHELL (I) : 0.88600 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER 2.5.7 REMARK 200 STARTING MODEL: 5KDB REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 41.04 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.09 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2M MGAC BIS-TRIS 0.1M, PH 5.5 PEG REMARK 280 3350, 23 % W/V. 1MM 4-METHYLAMINOBENZOIC ACID IN PROTEIN SAMPLE., REMARK 280 VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 289.15K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 25.57600 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OE2 GLU A 88 O HOH A 601 1.85 REMARK 500 O ALA A 281 O HOH A 602 1.86 REMARK 500 O PRO A 118 O HOH A 603 1.87 REMARK 500 OD2 ASP A 51 O HOH A 604 1.90 REMARK 500 O HOH A 638 O HOH A 676 2.02 REMARK 500 OE2 GLU A 317 O HOH A 605 2.06 REMARK 500 N LEU A 250 O HOH A 606 2.06 REMARK 500 N VAL A 80 O HOH A 607 2.06 REMARK 500 O HOH A 637 O HOH A 644 2.07 REMARK 500 O VAL A 67 O HOH A 608 2.10 REMARK 500 N ALA A 284 O HOH A 602 2.11 REMARK 500 OE2 GLU A 315 O HOH A 609 2.14 REMARK 500 O LEU A 246 O HOH A 610 2.15 REMARK 500 N PHE A 285 O HOH A 602 2.16 REMARK 500 O HOH A 681 O HOH A 682 2.18 REMARK 500 OD1 ASP A 133 O HOH A 611 2.19 REMARK 500 N LYS A 122 O HOH A 603 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 683 O HOH A 685 1545 2.16 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 33 88.15 -163.41 REMARK 500 ILE A 97 -55.60 -120.88 REMARK 500 LEU A 116 42.41 -109.14 REMARK 500 ILE A 148 -76.91 -88.22 REMARK 500 LEU A 151 -66.46 -139.07 REMARK 500 SER A 293 74.40 47.23 REMARK 500 CYS A 358 112.33 -36.95 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 HEM A 501 FE REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 358 SG REMARK 620 2 HEM A 501 NA 94.1 REMARK 620 3 HEM A 501 NB 85.0 89.6 REMARK 620 4 HEM A 501 NC 85.1 178.9 89.6 REMARK 620 5 HEM A 501 ND 90.7 90.3 175.7 90.4 REMARK 620 N 1 2 3 4 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue HEM A 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue 81P A 502 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CL A 503 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 5U5J RELATED DB: PDB REMARK 900 RELATED ID: 5U6T RELATED DB: PDB REMARK 900 RELATED ID: 5U6U RELATED DB: PDB DBREF 5U6W A 17 409 UNP Q2IU02 Q2IU02_RHOP2 18 410 SEQRES 1 A 393 THR ILE PRO HIS LEU ALA ILE ASP PRO PHE SER LEU ASP SEQRES 2 A 393 PHE PHE ASP ASP PRO TYR PRO ASP GLN GLN THR LEU ARG SEQRES 3 A 393 ASP ALA GLY PRO VAL VAL TYR LEU ASP LYS TRP ASN VAL SEQRES 4 A 393 TYR GLY VAL ALA ARG TYR ALA GLU VAL HIS ALA VAL LEU SEQRES 5 A 393 ASN ASP PRO THR THR PHE CYS SER SER ARG GLY VAL GLY SEQRES 6 A 393 LEU SER ASP PHE LYS LYS GLU LYS PRO TRP ARG PRO PRO SEQRES 7 A 393 SER LEU ILE LEU GLU ALA ASP PRO PRO ALA HIS THR ARG SEQRES 8 A 393 PRO ARG ALA VAL LEU SER LYS VAL LEU SER PRO ALA THR SEQRES 9 A 393 MET LYS THR ILE ARG ASP GLY PHE ALA ALA ALA ALA ASP SEQRES 10 A 393 ALA LYS VAL ASP GLU LEU LEU GLN ARG GLY CYS ILE ASP SEQRES 11 A 393 ALA ILE ALA ASP LEU ALA GLU ALA TYR PRO LEU SER VAL SEQRES 12 A 393 PHE PRO ASP ALA MET GLY LEU LYS GLN GLU GLY ARG GLU SEQRES 13 A 393 HIS LEU LEU PRO TYR ALA GLY LEU VAL PHE ASN ALA PHE SEQRES 14 A 393 GLY PRO PRO ASN GLU LEU ARG GLN THR ALA ILE GLU ARG SEQRES 15 A 393 SER ALA PRO HIS GLN ALA TYR VAL ASN GLU GLN CYS GLN SEQRES 16 A 393 ARG PRO ASN LEU ALA PRO GLY GLY PHE GLY ALA CYS ILE SEQRES 17 A 393 HIS ALA PHE THR ASP THR GLY GLU ILE THR PRO ASP GLU SEQRES 18 A 393 ALA PRO LEU LEU VAL ARG SER LEU LEU SER ALA GLY LEU SEQRES 19 A 393 ASP THR THR VAL ASN GLY ILE GLY ALA ALA VAL TYR CYS SEQRES 20 A 393 LEU ALA ARG PHE PRO GLY GLU LEU GLN ARG LEU ARG SER SEQRES 21 A 393 ASP PRO THR LEU ALA ARG ASN ALA PHE GLU GLU ALA VAL SEQRES 22 A 393 ARG PHE GLU SER PRO VAL GLN THR PHE PHE ARG THR THR SEQRES 23 A 393 THR ARG GLU VAL GLU LEU GLY GLY ALA VAL ILE GLY GLU SEQRES 24 A 393 GLY GLU LYS VAL LEU MET PHE LEU GLY SER ALA ASN ARG SEQRES 25 A 393 ASP PRO ARG ARG TRP SER ASP PRO ASP LEU TYR ASP ILE SEQRES 26 A 393 THR ARG LYS THR SER GLY HIS VAL GLY PHE GLY SER GLY SEQRES 27 A 393 VAL HIS MET CYS VAL GLY GLN LEU VAL ALA ARG LEU GLU SEQRES 28 A 393 GLY GLU VAL MET LEU SER ALA LEU ALA ARG LYS VAL ALA SEQRES 29 A 393 ALA ILE ASP ILE ASP GLY PRO VAL LYS ARG ARG PHE ASN SEQRES 30 A 393 ASN THR LEU ARG GLY LEU GLU SER LEU PRO VAL LYS LEU SEQRES 31 A 393 THR PRO ALA HET HEM A 501 43 HET 81P A 502 11 HET CL A 503 1 HETNAM HEM PROTOPORPHYRIN IX CONTAINING FE HETNAM 81P 4-(METHYLAMINO)BENZOIC ACID HETNAM CL CHLORIDE ION HETSYN HEM HEME FORMUL 2 HEM C34 H32 FE N4 O4 FORMUL 3 81P C8 H9 N O2 FORMUL 4 CL CL 1- FORMUL 5 HOH *85(H2 O) HELIX 1 AA1 SER A 27 ASP A 33 1 7 HELIX 2 AA2 PRO A 34 GLY A 45 1 12 HELIX 3 AA3 ARG A 60 ASN A 69 1 10 HELIX 4 AA4 HIS A 105 LEU A 116 1 12 HELIX 5 AA5 SER A 117 GLY A 143 1 27 HELIX 6 AA6 GLU A 153 GLY A 165 1 13 HELIX 7 AA7 GLY A 170 GLU A 172 5 3 HELIX 8 AA8 HIS A 173 PHE A 185 1 13 HELIX 9 AA9 ASN A 189 GLU A 197 1 9 HELIX 10 AB1 SER A 199 CYS A 210 1 12 HELIX 11 AB2 GLN A 211 LEU A 215 5 5 HELIX 12 AB3 GLY A 219 PHE A 227 1 9 HELIX 13 AB4 THR A 228 GLY A 231 5 4 HELIX 14 AB5 GLU A 237 GLY A 249 1 13 HELIX 15 AB6 LEU A 250 PHE A 267 1 18 HELIX 16 AB7 PHE A 267 ASP A 277 1 11 HELIX 17 AB8 LEU A 280 SER A 293 1 14 HELIX 18 AB9 LEU A 323 ASN A 327 1 5 HELIX 19 AC1 GLY A 360 LYS A 378 1 19 SHEET 1 AA1 6 HIS A 20 LEU A 21 0 SHEET 2 AA1 6 VAL A 48 LEU A 50 1 O TYR A 49 N LEU A 21 SHEET 3 AA1 6 VAL A 55 VAL A 58 -1 O VAL A 55 N LEU A 50 SHEET 4 AA1 6 LYS A 318 PHE A 322 1 O LEU A 320 N TYR A 56 SHEET 5 AA1 6 THR A 297 THR A 302 -1 N PHE A 298 O MET A 321 SHEET 6 AA1 6 PHE A 74 CYS A 75 -1 N CYS A 75 O THR A 301 SHEET 1 AA2 3 CYS A 144 ASP A 146 0 SHEET 2 AA2 3 PRO A 403 PRO A 408 -1 O VAL A 404 N ILE A 145 SHEET 3 AA2 3 VAL A 379 ILE A 384 -1 N ALA A 380 O THR A 407 SHEET 1 AA3 2 VAL A 306 LEU A 308 0 SHEET 2 AA3 2 ALA A 311 ILE A 313 -1 O ILE A 313 N VAL A 306 SHEET 1 AA4 2 LYS A 389 ARG A 391 0 SHEET 2 AA4 2 GLY A 398 SER A 401 -1 O SER A 401 N LYS A 389 LINK SG CYS A 358 FE HEM A 501 1555 1555 2.65 CISPEP 1 PRO A 102 PRO A 103 0 7.15 SITE 1 AC1 23 ILE A 97 LEU A 98 HIS A 105 ARG A 109 SITE 2 AC1 23 PHE A 160 ALA A 248 GLY A 249 THR A 252 SITE 3 AC1 23 THR A 253 VAL A 295 PHE A 298 ARG A 300 SITE 4 AC1 23 GLY A 350 PHE A 351 GLY A 352 VAL A 355 SITE 5 AC1 23 HIS A 356 CYS A 358 VAL A 359 GLY A 360 SITE 6 AC1 23 ALA A 364 81P A 502 HOH A 627 SITE 1 AC2 10 ARG A 92 SER A 95 LEU A 98 PHE A 182 SITE 2 AC2 10 SER A 244 SER A 247 ALA A 248 PHE A 298 SITE 3 AC2 10 HEM A 501 HOH A 618 SITE 1 AC3 3 TYR A 177 GLN A 203 ASN A 207 CRYST1 44.365 51.152 78.920 90.00 91.98 90.00 P 1 21 1 2 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.022540 0.000000 0.000780 0.00000 SCALE2 0.000000 0.019550 0.000000 0.00000 SCALE3 0.000000 0.000000 0.012679 0.00000