HEADER HYDROLASE 12-DEC-16 5U7F TITLE CO-BOUND DIHYDRONEOPTERIN TRIPHOSPHATE PYROPHOSPHOHYDROLASE FROM E. TITLE 2 COLI COMPND MOL_ID: 1; COMPND 2 MOLECULE: DIHYDRONEOPTERIN TRIPHOSPHATE DIPHOSPHATASE; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: DIHYDRONEOPTERIN TRIPHOSPHATE PYROPHOSPHATASE,DATP COMPND 5 PYROPHOSPHOHYDROLASE; COMPND 6 EC: 3.6.1.67; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ESCHERICHIA COLI O157:H7; SOURCE 3 ORGANISM_TAXID: 83334; SOURCE 4 GENE: NUDB, Z2917, ECS2575; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS NUDIX HYDROLASE, DIHYDRONEOPTERIN TRIPHOSPHATE PYROPHOSPHOHYDROLASE, KEYWDS 2 METAL ION BINDING, TETRANUCLEAR, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR E.NGUYEN,S.E.HILL,R.L.LIEBERMAN REVDAT 5 03-APR-24 5U7F 1 REMARK REVDAT 4 16-MAR-22 5U7F 1 LINK REVDAT 3 22-NOV-17 5U7F 1 REMARK REVDAT 2 09-AUG-17 5U7F 1 JRNL REVDAT 1 21-JUN-17 5U7F 0 JRNL AUTH S.E.HILL,E.NGUYEN,C.U.UKACHUKWU,D.M.FREEMAN,S.QUIRK, JRNL AUTH 2 R.L.LIEBERMAN JRNL TITL METAL ION COORDINATION IN THE E. COLI NUDIX HYDROLASE JRNL TITL 2 DIHYDRONEOPTERIN TRIPHOSPHATE PYROPHOSPHATASE: NEW CLUES JRNL TITL 3 INTO CATALYTIC MECHANISM. JRNL REF PLOS ONE V. 12 80241 2017 JRNL REFN ESSN 1932-6203 JRNL PMID 28742822 JRNL DOI 10.1371/JOURNAL.PONE.0180241 REMARK 2 REMARK 2 RESOLUTION. 1.79 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.9_1692 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.79 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 57.20 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.380 REMARK 3 COMPLETENESS FOR RANGE (%) : 93.6 REMARK 3 NUMBER OF REFLECTIONS : 23041 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.184 REMARK 3 R VALUE (WORKING SET) : 0.177 REMARK 3 FREE R VALUE : 0.240 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 10.100 REMARK 3 FREE R VALUE TEST SET COUNT : 2328 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 57.2287 - 4.5986 0.99 1297 152 0.1571 0.1856 REMARK 3 2 4.5986 - 3.6502 0.99 1295 143 0.1431 0.1850 REMARK 3 3 3.6502 - 3.1888 0.99 1277 141 0.1573 0.2392 REMARK 3 4 3.1888 - 2.8973 0.99 1267 146 0.1710 0.2365 REMARK 3 5 2.8973 - 2.6896 0.98 1267 148 0.1929 0.2975 REMARK 3 6 2.6896 - 2.5311 0.98 1311 133 0.1709 0.2586 REMARK 3 7 2.5311 - 2.4043 0.98 1265 151 0.1959 0.2670 REMARK 3 8 2.4043 - 2.2996 0.97 1246 155 0.1905 0.2644 REMARK 3 9 2.2996 - 2.2111 0.97 1280 146 0.1850 0.2957 REMARK 3 10 2.2111 - 2.1348 0.96 1255 137 0.1889 0.2717 REMARK 3 11 2.1348 - 2.0680 0.97 1227 129 0.2000 0.2306 REMARK 3 12 2.0680 - 2.0089 0.96 1279 141 0.1907 0.2656 REMARK 3 13 2.0089 - 1.9560 0.95 1229 153 0.1938 0.2467 REMARK 3 14 1.9560 - 1.9083 0.95 1266 132 0.2087 0.3085 REMARK 3 15 1.9083 - 1.8649 0.95 1243 126 0.2488 0.3013 REMARK 3 16 1.8649 - 1.8252 0.90 1129 127 0.2784 0.4075 REMARK 3 17 1.8252 - 1.7887 0.44 580 68 0.4256 0.4687 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.250 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 27.650 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.019 1234 REMARK 3 ANGLE : 1.258 1648 REMARK 3 CHIRALITY : 0.055 185 REMARK 3 PLANARITY : 0.007 210 REMARK 3 DIHEDRAL : 13.819 440 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5U7F COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 16-DEC-16. REMARK 100 THE DEPOSITION ID IS D_1000225447. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 25-NOV-15 REMARK 200 TEMPERATURE (KELVIN) : 80 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 22-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.606 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 300 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : NULL REMARK 200 DATA SCALING SOFTWARE : XDS, XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 23041 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.789 REMARK 200 RESOLUTION RANGE LOW (A) : 57.199 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 94.8 REMARK 200 DATA REDUNDANCY : 6.900 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 12.6100 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: MAD REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 201C REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 36.65 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 1.94 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: CRYSTALS WERE GROWN IN 36% PEG 8000, REMARK 280 0.05M AMMONIUM SULFATE. CRYSTALS WERE SOAKED IN 0.5MM REMARK 280 DIHYDRONEOPTERIN AND 5MM COCL2., VAPOR DIFFUSION, SITTING DROP, REMARK 280 TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 27.30000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 21.54500 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 27.30000 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 21.54500 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2780 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 14030 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -179.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 54.60000 REMARK 350 BIOMT2 2 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 329 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 356 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 420 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 LYS A 2 REMARK 465 ASP A 3 REMARK 465 LYS A 4 REMARK 465 ALA A 149 REMARK 465 ALA A 150 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 HE ARG A 90 O HOH A 304 1.52 REMARK 500 O HOH A 320 O HOH A 411 2.16 REMARK 500 O HOH A 359 O HOH A 423 2.16 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 139 NE - CZ - NH2 ANGL. DEV. = -3.5 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 PRO A 9 33.75 -86.21 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 434 DISTANCE = 6.16 ANGSTROMS REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CO A 205 CO REMARK 620 N RES CSSEQI ATOM REMARK 620 1 THR A 40 O REMARK 620 2 GLU A 60 OE2 93.8 REMARK 620 3 GLU A 117 OE1 170.4 77.8 REMARK 620 4 SO4 A 202 O3 90.7 84.3 93.1 REMARK 620 5 HOH A 307 O 90.8 165.7 98.5 82.1 REMARK 620 6 HOH A 336 O 83.7 95.8 92.4 174.4 98.1 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CO A 203 CO REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 56 OE2 REMARK 620 2 SO4 A 202 O4 103.7 REMARK 620 3 HOH A 364 O 87.2 94.1 REMARK 620 4 HOH A 375 O 87.9 166.1 94.2 REMARK 620 5 HOH A 386 O 89.8 91.8 173.9 80.5 REMARK 620 6 HOH A 387 O 174.4 81.5 90.4 87.2 92.2 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CO A 204 CO REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 56 OE1 REMARK 620 2 GLU A 60 OE2 89.3 REMARK 620 3 GLU A 117 OE2 161.3 74.4 REMARK 620 4 SO4 A 202 O3 101.7 81.3 85.2 REMARK 620 5 HOH A 374 O 87.7 104.1 87.4 169.3 REMARK 620 6 HOH A 386 O 95.4 173.3 101.7 93.0 81.0 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CO A 206 CO REMARK 620 N RES CSSEQI ATOM REMARK 620 1 SO4 A 202 O2 REMARK 620 2 HOH A 316 O 96.7 REMARK 620 3 HOH A 386 O 95.4 85.1 REMARK 620 4 HOH A 387 O 102.8 159.9 88.2 REMARK 620 5 HOH A 388 O 81.3 91.2 174.7 96.5 REMARK 620 N 1 2 3 4 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 202 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CO A 203 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CO A 204 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CO A 205 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CO A 206 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 5U7E RELATED DB: PDB REMARK 900 RELATED ID: 5U7H RELATED DB: PDB DBREF 5U7F A 1 150 UNP P0AFC1 NUDB_ECO57 1 150 SEQRES 1 A 150 MET LYS ASP LYS VAL TYR LYS ARG PRO VAL SER ILE LEU SEQRES 2 A 150 VAL VAL ILE TYR ALA GLN ASP THR LYS ARG VAL LEU MET SEQRES 3 A 150 LEU GLN ARG ARG ASP ASP PRO ASP PHE TRP GLN SER VAL SEQRES 4 A 150 THR GLY SER VAL GLU GLU GLY GLU THR ALA PRO GLN ALA SEQRES 5 A 150 ALA MET ARG GLU VAL LYS GLU GLU VAL THR ILE ASP VAL SEQRES 6 A 150 VAL ALA GLU GLN LEU THR LEU ILE ASP CYS GLN ARG THR SEQRES 7 A 150 VAL GLU PHE GLU ILE PHE SER HIS LEU ARG HIS ARG TYR SEQRES 8 A 150 ALA PRO GLY VAL THR ARG ASN THR GLU SER TRP PHE CYS SEQRES 9 A 150 LEU ALA LEU PRO HIS GLU ARG GLN ILE VAL PHE THR GLU SEQRES 10 A 150 HIS LEU ALA TYR LYS TRP LEU ASP ALA PRO ALA ALA ALA SEQRES 11 A 150 ALA LEU THR LYS SER TRP SER ASN ARG GLN ALA ILE GLU SEQRES 12 A 150 GLN PHE VAL ILE ASN ALA ALA HET SO4 A 201 5 HET SO4 A 202 5 HET CO A 203 1 HET CO A 204 1 HET CO A 205 1 HET CO A 206 1 HETNAM SO4 SULFATE ION HETNAM CO COBALT (II) ION FORMUL 2 SO4 2(O4 S 2-) FORMUL 4 CO 4(CO 2+) FORMUL 8 HOH *134(H2 O) HELIX 1 AA1 THR A 48 THR A 62 1 15 HELIX 2 AA2 PHE A 84 TYR A 91 5 8 HELIX 3 AA3 ALA A 126 THR A 133 1 8 HELIX 4 AA4 SER A 135 VAL A 146 1 12 SHEET 1 AA1 4 VAL A 39 SER A 42 0 SHEET 2 AA1 4 VAL A 10 ALA A 18 -1 N VAL A 14 O VAL A 39 SHEET 3 AA1 4 ARG A 97 LEU A 107 1 O THR A 99 N SER A 11 SHEET 4 AA1 4 LEU A 72 GLU A 82 -1 N PHE A 81 O ASN A 98 SHEET 1 AA2 3 TRP A 36 GLN A 37 0 SHEET 2 AA2 3 ARG A 23 ARG A 29 -1 N LEU A 27 O GLN A 37 SHEET 3 AA2 3 HIS A 118 ASP A 125 -1 O LEU A 124 N VAL A 24 SSBOND 1 CYS A 75 CYS A 104 1555 1555 2.06 LINK O THR A 40 CO CO A 205 1555 1555 2.05 LINK OE2 GLU A 56 CO CO A 203 1555 1555 2.12 LINK OE1 GLU A 56 CO CO A 204 1555 1555 2.06 LINK OE2 GLU A 60 CO CO A 204 1555 1555 2.10 LINK OE2 GLU A 60 CO CO A 205 1555 1555 2.08 LINK OE2 GLU A 117 CO CO A 204 1555 1555 2.14 LINK OE1 GLU A 117 CO CO A 205 1555 1555 2.15 LINK O4 SO4 A 202 CO CO A 203 1555 1555 2.19 LINK O3 SO4 A 202 CO CO A 204 1555 1555 2.21 LINK O3 SO4 A 202 CO CO A 205 1555 1555 2.10 LINK O2 SO4 A 202 CO CO A 206 1555 1555 2.18 LINK CO CO A 203 O HOH A 364 1555 1555 2.13 LINK CO CO A 203 O HOH A 375 1555 1555 2.16 LINK CO CO A 203 O HOH A 386 1555 1555 2.01 LINK CO CO A 203 O HOH A 387 1555 1555 2.29 LINK CO CO A 204 O HOH A 374 1555 1555 2.14 LINK CO CO A 204 O HOH A 386 1555 1555 1.92 LINK CO CO A 205 O HOH A 307 1555 1555 2.18 LINK CO CO A 205 O HOH A 336 1555 1555 2.19 LINK CO CO A 206 O HOH A 316 1555 1555 2.05 LINK CO CO A 206 O HOH A 386 1555 1555 2.31 LINK CO CO A 206 O HOH A 387 1555 1555 2.15 LINK CO CO A 206 O HOH A 388 1555 1555 2.32 SITE 1 AC1 6 PHE A 81 GLU A 82 ARG A 97 TRP A 136 SITE 2 AC1 6 HOH A 356 HOH A 361 SITE 1 AC2 18 LYS A 7 THR A 40 GLY A 41 SER A 42 SITE 2 AC2 18 GLU A 56 GLU A 60 GLU A 117 CO A 203 SITE 3 AC2 18 CO A 204 CO A 205 CO A 206 HOH A 305 SITE 4 AC2 18 HOH A 307 HOH A 386 HOH A 387 HOH A 388 SITE 5 AC2 18 HOH A 392 HOH A 397 SITE 1 AC3 8 GLU A 56 SO4 A 202 CO A 204 CO A 206 SITE 2 AC3 8 HOH A 364 HOH A 375 HOH A 386 HOH A 387 SITE 1 AC4 9 GLU A 56 GLU A 60 GLU A 117 SO4 A 202 SITE 2 AC4 9 CO A 203 CO A 205 CO A 206 HOH A 374 SITE 3 AC4 9 HOH A 386 SITE 1 AC5 7 THR A 40 GLU A 60 GLU A 117 SO4 A 202 SITE 2 AC5 7 CO A 204 HOH A 307 HOH A 336 SITE 1 AC6 8 GLU A 117 SO4 A 202 CO A 203 CO A 204 SITE 2 AC6 8 HOH A 316 HOH A 386 HOH A 387 HOH A 388 CRYST1 54.600 43.090 57.230 90.00 91.87 90.00 C 1 2 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.018315 0.000000 0.000598 0.00000 SCALE2 0.000000 0.023207 0.000000 0.00000 SCALE3 0.000000 0.000000 0.017483 0.00000