HEADER HYDROLASE 13-DEC-16 5U84 TITLE ACID CERAMIDASE (ASAH1, ACDASE) FROM COMMON MINKE WHALE, CYS143ALA, TITLE 2 UNCLEAVED COMPND MOL_ID: 1; COMPND 2 MOLECULE: ACID CERAMIDASE; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: ACID CDASE; COMPND 5 EC: 3.5.1.23; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: BALAENOPTERA ACUTOROSTRATA; SOURCE 3 ORGANISM_COMMON: MINKE WHALE; SOURCE 4 ORGANISM_TAXID: 9767; SOURCE 5 GENE: ASAH1; SOURCE 6 EXPRESSION_SYSTEM: SPODOPTERA FRUGIPERDA; SOURCE 7 EXPRESSION_SYSTEM_COMMON: FALL ARMYWORM; SOURCE 8 EXPRESSION_SYSTEM_TAXID: 7108 KEYWDS CERAMIDASE, CERAMIDE, NTN-HYDROLASE, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR A.GEBAI,A.GORELIK,K.ILLES,B.NAGAR REVDAT 5 29-JUL-20 5U84 1 COMPND REMARK HETNAM LINK REVDAT 5 2 1 SITE ATOM REVDAT 4 29-MAY-19 5U84 1 COMPND SOURCE DBREF SEQADV REVDAT 3 17-APR-19 5U84 1 COMPND REVDAT 2 02-MAY-18 5U84 1 JRNL REVDAT 1 28-MAR-18 5U84 0 JRNL AUTH A.GEBAI,A.GORELIK,Z.LI,K.ILLES,B.NAGAR JRNL TITL STRUCTURAL BASIS FOR THE ACTIVATION OF ACID CERAMIDASE. JRNL REF NAT COMMUN V. 9 1621 2018 JRNL REFN ESSN 2041-1723 JRNL PMID 29692406 JRNL DOI 10.1038/S41467-018-03844-2 REMARK 2 REMARK 2 RESOLUTION. 2.34 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.10.1_2155 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.34 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 44.66 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.350 REMARK 3 COMPLETENESS FOR RANGE (%) : 81.5 REMARK 3 NUMBER OF REFLECTIONS : 67018 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.201 REMARK 3 R VALUE (WORKING SET) : 0.200 REMARK 3 FREE R VALUE : 0.231 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.830 REMARK 3 FREE R VALUE TEST SET COUNT : 3239 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 44.6637 - 6.6477 1.00 3389 184 0.2070 0.2268 REMARK 3 2 6.6477 - 5.2792 1.00 3402 172 0.2093 0.2635 REMARK 3 3 5.2792 - 4.6126 1.00 3420 177 0.1525 0.1748 REMARK 3 4 4.6126 - 4.1912 1.00 3390 171 0.1471 0.2036 REMARK 3 5 4.1912 - 3.8910 1.00 3416 174 0.1574 0.1680 REMARK 3 6 3.8910 - 3.6617 1.00 3372 166 0.1735 0.2081 REMARK 3 7 3.6617 - 3.4784 1.00 3432 178 0.1831 0.2244 REMARK 3 8 3.4784 - 3.3270 0.99 3337 170 0.1886 0.1999 REMARK 3 9 3.3270 - 3.1990 0.99 3396 178 0.2000 0.2419 REMARK 3 10 3.1990 - 3.0886 0.99 3383 162 0.2151 0.2779 REMARK 3 11 3.0886 - 2.9921 0.97 3235 180 0.2263 0.2608 REMARK 3 12 2.9921 - 2.9066 0.95 3274 135 0.2488 0.2815 REMARK 3 13 2.9066 - 2.8301 0.91 3086 169 0.2522 0.2589 REMARK 3 14 2.8301 - 2.7610 0.85 2908 143 0.2588 0.2324 REMARK 3 15 2.7610 - 2.6983 0.79 2653 146 0.2415 0.2791 REMARK 3 16 2.6983 - 2.6408 0.73 2534 121 0.2401 0.2485 REMARK 3 17 2.6408 - 2.5880 0.68 2296 110 0.2474 0.2991 REMARK 3 18 2.5880 - 2.5392 0.62 2112 119 0.2485 0.2693 REMARK 3 19 2.5392 - 2.4938 0.58 1971 87 0.2585 0.3044 REMARK 3 20 2.4938 - 2.4516 0.53 1784 92 0.2699 0.3199 REMARK 3 21 2.4516 - 2.4120 0.47 1619 62 0.3045 0.3613 REMARK 3 22 2.4120 - 2.3749 0.39 1328 84 0.3138 0.2981 REMARK 3 23 2.3749 - 2.3400 0.30 1042 59 0.3174 0.3194 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.240 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 24.870 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.003 6108 REMARK 3 ANGLE : 0.727 8344 REMARK 3 CHIRALITY : 0.046 917 REMARK 3 PLANARITY : 0.003 1042 REMARK 3 DIHEDRAL : 12.510 3533 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5U84 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 16-DEC-16. REMARK 100 THE DEPOSITION ID IS D_1000225476. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 16-SEP-16 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 3.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : CLSI REMARK 200 BEAMLINE : 08B1-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.77122 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : RAYONIX MX-300 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 67018 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.340 REMARK 200 RESOLUTION RANGE LOW (A) : 44.656 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.0 REMARK 200 DATA REDUNDANCY : 6.800 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 14.4000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 57.11 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.87 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: CITRIC ACID SODIUM CHLORIDE LITHIUM 5 REMARK 280 -AMINO-2,4,6-TRIIODOISOPHTHALATE (I3C), VAPOR DIFFUSION, SITTING REMARK 280 DROP, TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 59.40750 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 54.63350 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 59.40750 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 54.63350 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B, E REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ASP A 12 REMARK 465 ARG A 13 REMARK 465 HIS A 14 REMARK 465 HIS A 15 REMARK 465 HIS A 16 REMARK 465 HIS A 17 REMARK 465 HIS A 18 REMARK 465 HIS A 19 REMARK 465 LYS A 20 REMARK 465 LEU A 21 REMARK 465 GLN A 22 REMARK 465 HIS A 23 REMARK 465 VAL A 24 REMARK 465 PRO A 25 REMARK 465 PRO A 26 REMARK 465 TRP A 27 REMARK 465 THR A 28 REMARK 465 GLU A 29 REMARK 465 THR A 229 REMARK 465 ASN A 230 REMARK 465 GLY A 231 REMARK 465 LEU A 241 REMARK 465 GLY A 242 REMARK 465 LYS A 243 REMARK 465 LYS A 244 REMARK 465 ASP A 245 REMARK 465 ALA A 246 REMARK 465 LYS A 247 REMARK 465 TRP A 248 REMARK 465 ILE A 249 REMARK 465 GLY A 250 REMARK 465 PHE A 251 REMARK 465 ASP B 12 REMARK 465 ARG B 13 REMARK 465 HIS B 14 REMARK 465 HIS B 15 REMARK 465 HIS B 16 REMARK 465 HIS B 17 REMARK 465 HIS B 18 REMARK 465 HIS B 19 REMARK 465 LYS B 20 REMARK 465 LEU B 21 REMARK 465 GLN B 22 REMARK 465 HIS B 23 REMARK 465 VAL B 24 REMARK 465 PRO B 25 REMARK 465 PRO B 26 REMARK 465 TRP B 27 REMARK 465 THR B 28 REMARK 465 GLU B 29 REMARK 465 THR B 229 REMARK 465 ASN B 230 REMARK 465 GLY B 231 REMARK 465 LEU B 241 REMARK 465 GLY B 242 REMARK 465 LYS B 243 REMARK 465 LYS B 244 REMARK 465 ASP B 245 REMARK 465 ALA B 246 REMARK 465 LYS B 247 REMARK 465 TRP B 248 REMARK 465 ILE B 249 REMARK 465 GLY B 250 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 HZ1 LYS A 81 OE2 GLU A 129 1.50 REMARK 500 O THR A 344 HG1 THR A 345 1.51 REMARK 500 HG1 THR A 35 OD1 ASP A 356 1.53 REMARK 500 H PHE A 351 O9 I3C A 407 1.56 REMARK 500 HE21 GLN A 380 O11 I3C A 407 1.60 REMARK 500 ND2 ASN A 259 O5 NAG D 1 2.07 REMARK 500 O12 I3C A 412 O HOH A 501 2.07 REMARK 500 O ASN A 194 O HOH A 502 2.11 REMARK 500 O SER A 286 O HOH A 503 2.14 REMARK 500 O8 I3C A 409 O HOH A 504 2.15 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 HH22 ARG A 226 OE1 GLN A 311 2556 1.57 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 TRP A 169 -24.15 -150.16 REMARK 500 ASN A 194 -105.46 49.71 REMARK 500 ASP A 297 -169.22 -111.42 REMARK 500 THR A 319 -125.11 -104.96 REMARK 500 THR A 345 147.71 76.85 REMARK 500 TRP B 169 -24.45 -150.73 REMARK 500 LEU B 218 -70.39 -111.73 REMARK 500 ASP B 297 -164.72 -111.68 REMARK 500 ASP B 308 74.00 -150.71 REMARK 500 THR B 319 -126.56 -104.74 REMARK 500 THR B 345 148.62 76.81 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 5U7Z RELATED DB: PDB REMARK 900 RELATED ID: 5U81 RELATED DB: PDB DBREF1 5U84 A 22 395 UNP ASAH1_BALAS DBREF2 5U84 A A0A383ZFX3 22 395 DBREF1 5U84 B 22 395 UNP ASAH1_BALAS DBREF2 5U84 B A0A383ZFX3 22 395 SEQADV 5U84 ASP A 12 UNP A0A383ZFX EXPRESSION TAG SEQADV 5U84 ARG A 13 UNP A0A383ZFX EXPRESSION TAG SEQADV 5U84 HIS A 14 UNP A0A383ZFX EXPRESSION TAG SEQADV 5U84 HIS A 15 UNP A0A383ZFX EXPRESSION TAG SEQADV 5U84 HIS A 16 UNP A0A383ZFX EXPRESSION TAG SEQADV 5U84 HIS A 17 UNP A0A383ZFX EXPRESSION TAG SEQADV 5U84 HIS A 18 UNP A0A383ZFX EXPRESSION TAG SEQADV 5U84 HIS A 19 UNP A0A383ZFX EXPRESSION TAG SEQADV 5U84 LYS A 20 UNP A0A383ZFX EXPRESSION TAG SEQADV 5U84 LEU A 21 UNP A0A383ZFX EXPRESSION TAG SEQADV 5U84 ALA A 143 UNP A0A383ZFX CYS 143 ENGINEERED MUTATION SEQADV 5U84 ASP B 12 UNP A0A383ZFX EXPRESSION TAG SEQADV 5U84 ARG B 13 UNP A0A383ZFX EXPRESSION TAG SEQADV 5U84 HIS B 14 UNP A0A383ZFX EXPRESSION TAG SEQADV 5U84 HIS B 15 UNP A0A383ZFX EXPRESSION TAG SEQADV 5U84 HIS B 16 UNP A0A383ZFX EXPRESSION TAG SEQADV 5U84 HIS B 17 UNP A0A383ZFX EXPRESSION TAG SEQADV 5U84 HIS B 18 UNP A0A383ZFX EXPRESSION TAG SEQADV 5U84 HIS B 19 UNP A0A383ZFX EXPRESSION TAG SEQADV 5U84 LYS B 20 UNP A0A383ZFX EXPRESSION TAG SEQADV 5U84 LEU B 21 UNP A0A383ZFX EXPRESSION TAG SEQADV 5U84 ALA B 143 UNP A0A383ZFX CYS 143 ENGINEERED MUTATION SEQRES 1 A 384 ASP ARG HIS HIS HIS HIS HIS HIS LYS LEU GLN HIS VAL SEQRES 2 A 384 PRO PRO TRP THR GLU ASP CYS ARG LYS SER THR TYR PRO SEQRES 3 A 384 PRO SER GLY PRO THR TYR ARG GLY PRO VAL PRO TRP TYR SEQRES 4 A 384 THR ILE ASN LEU ASP LEU PRO PRO TYR LYS ARG TRP HIS SEQRES 5 A 384 GLU LEU MET VAL ASP LYS ALA PRO ALA LEU LYS VAL ILE SEQRES 6 A 384 VAL ASN TYR LEU LYS ASN MET ILE ASN ALA PHE GLU PRO SEQRES 7 A 384 SER GLY LYS ILE VAL GLN LEU VAL ASP GLN LYS LEU PRO SEQRES 8 A 384 GLY LEU LEU GLY SER PHE PRO GLY PRO PHE GLU GLU GLU SEQRES 9 A 384 MET LYS GLY ILE ALA ALA VAL THR GLU ILE PRO LEU GLY SEQRES 10 A 384 GLU ILE ILE LEU PHE ASN ILE PHE TYR GLU PHE PHE THR SEQRES 11 A 384 ILE ALA THR SER ILE ILE THR GLU ASP LYS GLU GLY HIS SEQRES 12 A 384 LEU LEU HIS ALA ARG ASN MET ASP PHE GLY VAL PHE LEU SEQRES 13 A 384 GLY TRP ASN VAL ASN ASN ASN THR TRP VAL VAL THR GLU SEQRES 14 A 384 GLU LEU LYS PRO LEU THR VAL ASN LEU ASP PHE GLN ARG SEQRES 15 A 384 ASN SER LYS THR VAL PHE LYS ALA ALA GLY PHE ALA GLY SEQRES 16 A 384 TYR VAL GLY MET LEU THR GLY PHE LYS PRO GLY LEU PHE SEQRES 17 A 384 SER LEU THR LEU ASN GLU ARG PHE SER THR ASN GLY GLY SEQRES 18 A 384 PHE MET GLY VAL ILE GLU TRP ILE LEU GLY LYS LYS ASP SEQRES 19 A 384 ALA LYS TRP ILE GLY PHE ILE ILE ARG SER VAL LEU GLU SEQRES 20 A 384 ASN SER THR SER TYR GLU GLU ALA LYS THR ILE LEU THR SEQRES 21 A 384 LYS SER LYS ILE LEU ALA PRO ALA TYR PHE ILE LEU GLY SEQRES 22 A 384 GLY SER LYS SER GLY GLU GLY CYS VAL ILE THR ARG ASP SEQRES 23 A 384 ARG VAL GLN SER LEU ASP ILE TYR GLU LEU ASP PRO LYS SEQRES 24 A 384 GLN GLY ILE TRP TYR VAL VAL GLN THR ASN TYR ASP ARG SEQRES 25 A 384 TRP LYS ASN PRO PHE PHE LEU ASP ASN ARG ARG THR PRO SEQRES 26 A 384 ALA LYS MET CYS LEU ASN ARG THR THR GLN GLU ASN ILE SEQRES 27 A 384 SER PHE ALA THR MET TYR ASP VAL LEU SER THR LYS PRO SEQRES 28 A 384 VAL LEU ASN LYS LEU THR VAL TYR THR ALA LEU ILE ASP SEQRES 29 A 384 VAL THR LYS GLY GLN PHE GLU THR TYR LEU ARG ASP CYS SEQRES 30 A 384 PRO ASP PRO CYS ILE GLY TRP SEQRES 1 B 384 ASP ARG HIS HIS HIS HIS HIS HIS LYS LEU GLN HIS VAL SEQRES 2 B 384 PRO PRO TRP THR GLU ASP CYS ARG LYS SER THR TYR PRO SEQRES 3 B 384 PRO SER GLY PRO THR TYR ARG GLY PRO VAL PRO TRP TYR SEQRES 4 B 384 THR ILE ASN LEU ASP LEU PRO PRO TYR LYS ARG TRP HIS SEQRES 5 B 384 GLU LEU MET VAL ASP LYS ALA PRO ALA LEU LYS VAL ILE SEQRES 6 B 384 VAL ASN TYR LEU LYS ASN MET ILE ASN ALA PHE GLU PRO SEQRES 7 B 384 SER GLY LYS ILE VAL GLN LEU VAL ASP GLN LYS LEU PRO SEQRES 8 B 384 GLY LEU LEU GLY SER PHE PRO GLY PRO PHE GLU GLU GLU SEQRES 9 B 384 MET LYS GLY ILE ALA ALA VAL THR GLU ILE PRO LEU GLY SEQRES 10 B 384 GLU ILE ILE LEU PHE ASN ILE PHE TYR GLU PHE PHE THR SEQRES 11 B 384 ILE ALA THR SER ILE ILE THR GLU ASP LYS GLU GLY HIS SEQRES 12 B 384 LEU LEU HIS ALA ARG ASN MET ASP PHE GLY VAL PHE LEU SEQRES 13 B 384 GLY TRP ASN VAL ASN ASN ASN THR TRP VAL VAL THR GLU SEQRES 14 B 384 GLU LEU LYS PRO LEU THR VAL ASN LEU ASP PHE GLN ARG SEQRES 15 B 384 ASN SER LYS THR VAL PHE LYS ALA ALA GLY PHE ALA GLY SEQRES 16 B 384 TYR VAL GLY MET LEU THR GLY PHE LYS PRO GLY LEU PHE SEQRES 17 B 384 SER LEU THR LEU ASN GLU ARG PHE SER THR ASN GLY GLY SEQRES 18 B 384 PHE MET GLY VAL ILE GLU TRP ILE LEU GLY LYS LYS ASP SEQRES 19 B 384 ALA LYS TRP ILE GLY PHE ILE ILE ARG SER VAL LEU GLU SEQRES 20 B 384 ASN SER THR SER TYR GLU GLU ALA LYS THR ILE LEU THR SEQRES 21 B 384 LYS SER LYS ILE LEU ALA PRO ALA TYR PHE ILE LEU GLY SEQRES 22 B 384 GLY SER LYS SER GLY GLU GLY CYS VAL ILE THR ARG ASP SEQRES 23 B 384 ARG VAL GLN SER LEU ASP ILE TYR GLU LEU ASP PRO LYS SEQRES 24 B 384 GLN GLY ILE TRP TYR VAL VAL GLN THR ASN TYR ASP ARG SEQRES 25 B 384 TRP LYS ASN PRO PHE PHE LEU ASP ASN ARG ARG THR PRO SEQRES 26 B 384 ALA LYS MET CYS LEU ASN ARG THR THR GLN GLU ASN ILE SEQRES 27 B 384 SER PHE ALA THR MET TYR ASP VAL LEU SER THR LYS PRO SEQRES 28 B 384 VAL LEU ASN LYS LEU THR VAL TYR THR ALA LEU ILE ASP SEQRES 29 B 384 VAL THR LYS GLY GLN PHE GLU THR TYR LEU ARG ASP CYS SEQRES 30 B 384 PRO ASP PRO CYS ILE GLY TRP HET NAG C 1 26 HET NAG C 2 28 HET FUC C 3 21 HET NAG D 1 27 HET NAG D 2 28 HET NAG E 1 26 HET NAG E 2 28 HET FUC E 3 21 HET I3C A 406 18 HET I3C A 407 54 HET I3C A 408 18 HET I3C A 409 18 HET I3C A 410 18 HET I3C A 411 18 HET I3C A 412 18 HET IOD A 413 1 HET IOD A 414 1 HET IOD A 415 1 HET IOD A 416 1 HET IOD A 417 1 HET IOD A 418 1 HET IOD A 419 1 HET IOD A 420 1 HET IOD A 421 1 HET IOD A 422 1 HET IOD A 423 1 HET IOD A 424 1 HET IOD A 425 1 HET IOD A 426 1 HET IOD A 427 1 HET IOD A 428 1 HET IOD A 429 1 HET IOD A 430 1 HET I3C B 404 18 HET I3C B 405 18 HET IOD B 406 1 HET IOD B 407 1 HET IOD B 408 1 HET IOD B 409 1 HET IOD B 410 1 HET IOD B 411 1 HET IOD B 412 1 HET IOD B 413 1 HET IOD B 414 1 HET IOD B 415 1 HET IOD B 416 1 HET IOD B 417 1 HET IOD B 418 1 HET IOD B 419 1 HET IOD B 420 1 HET IOD B 421 1 HETNAM NAG 2-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE HETNAM FUC ALPHA-L-FUCOPYRANOSE HETNAM I3C 5-AMINO-2,4,6-TRIIODOBENZENE-1,3-DICARBOXYLIC ACID HETNAM IOD IODIDE ION HETSYN I3C 5-AMINO-2,4,6-TRIIODOISOPHTHALIC ACID FORMUL 3 NAG 6(C8 H15 N O6) FORMUL 3 FUC 2(C6 H12 O5) FORMUL 6 I3C 9(C8 H4 I3 N O4) FORMUL 13 IOD 34(I 1-) FORMUL 49 HOH *134(H2 O) HELIX 1 AA1 PRO A 57 ARG A 61 5 5 HELIX 2 AA2 TRP A 62 VAL A 67 1 6 HELIX 3 AA3 LYS A 69 GLU A 88 1 20 HELIX 4 AA4 LYS A 92 LYS A 100 1 9 HELIX 5 AA5 LYS A 100 PHE A 108 1 9 HELIX 6 AA6 PRO A 109 GLU A 124 1 16 HELIX 7 AA7 PRO A 126 TYR A 137 1 12 HELIX 8 AA8 ASN A 174 LYS A 183 1 10 HELIX 9 AA9 PHE A 233 ILE A 240 1 8 HELIX 10 AB1 ILE A 253 SER A 260 1 8 HELIX 11 AB2 SER A 262 SER A 273 1 12 HELIX 12 AB3 ASP A 308 GLY A 312 5 5 HELIX 13 AB4 ARG A 333 THR A 345 1 13 HELIX 14 AB5 GLN A 346 ILE A 349 5 4 HELIX 15 AB6 SER A 350 LEU A 358 1 9 HELIX 16 AB7 PRO B 57 ARG B 61 5 5 HELIX 17 AB8 LYS B 69 GLU B 88 1 20 HELIX 18 AB9 LYS B 92 PHE B 108 1 17 HELIX 19 AC1 PRO B 109 GLU B 124 1 16 HELIX 20 AC2 PRO B 126 TYR B 137 1 12 HELIX 21 AC3 ASN B 174 LYS B 183 1 10 HELIX 22 AC4 PHE B 233 ILE B 240 1 8 HELIX 23 AC5 ILE B 252 SER B 260 1 9 HELIX 24 AC6 SER B 262 SER B 273 1 12 HELIX 25 AC7 ASP B 308 GLY B 312 5 5 HELIX 26 AC8 ARG B 333 THR B 345 1 13 HELIX 27 AC9 GLN B 346 ILE B 349 5 4 HELIX 28 AD1 SER B 350 LEU B 358 1 9 SHEET 1 AA1 6 TYR A 43 PRO A 46 0 SHEET 2 AA1 6 GLN A 380 ARG A 386 -1 O LEU A 385 N GLY A 45 SHEET 3 AA1 6 THR A 368 ASP A 375 -1 N LEU A 373 O GLU A 382 SHEET 4 AA1 6 LEU A 155 PHE A 163 -1 N MET A 161 O VAL A 369 SHEET 5 AA1 6 THR A 141 GLU A 149 -1 N ILE A 142 O ASP A 162 SHEET 6 AA1 6 TYR A 315 GLN A 318 -1 O GLN A 318 N SER A 145 SHEET 1 AA2 8 TRP A 49 ASN A 53 0 SHEET 2 AA2 8 THR A 186 ARG A 193 1 O GLN A 192 N ILE A 52 SHEET 3 AA2 8 LYS A 196 PHE A 204 -1 O ALA A 201 N LEU A 189 SHEET 4 AA2 8 THR A 212 LYS A 215 -1 O PHE A 214 N LYS A 200 SHEET 5 AA2 8 PHE A 219 GLU A 225 -1 O LEU A 221 N GLY A 213 SHEET 6 AA2 8 ALA A 279 GLY A 285 -1 O GLY A 284 N SER A 220 SHEET 7 AA2 8 GLY A 291 ARG A 296 -1 O ILE A 294 N PHE A 281 SHEET 8 AA2 8 SER A 301 GLU A 306 -1 O ASP A 303 N THR A 295 SHEET 1 AA3 6 TYR B 43 PRO B 46 0 SHEET 2 AA3 6 GLN B 380 ARG B 386 -1 O LEU B 385 N GLY B 45 SHEET 3 AA3 6 THR B 368 ASP B 375 -1 N LEU B 373 O GLU B 382 SHEET 4 AA3 6 LEU B 155 PHE B 163 -1 N MET B 161 O VAL B 369 SHEET 5 AA3 6 THR B 141 GLU B 149 -1 N ILE B 142 O ASP B 162 SHEET 6 AA3 6 TYR B 315 GLN B 318 -1 O GLN B 318 N SER B 145 SHEET 1 AA4 8 TRP B 49 ASN B 53 0 SHEET 2 AA4 8 THR B 186 ARG B 193 1 O GLN B 192 N ILE B 52 SHEET 3 AA4 8 LYS B 196 PHE B 204 -1 O ALA B 201 N LEU B 189 SHEET 4 AA4 8 THR B 212 LYS B 215 -1 O PHE B 214 N LYS B 200 SHEET 5 AA4 8 PHE B 219 GLU B 225 -1 O LEU B 221 N GLY B 213 SHEET 6 AA4 8 ALA B 279 GLY B 285 -1 O GLY B 284 N SER B 220 SHEET 7 AA4 8 GLY B 291 ARG B 296 -1 O ILE B 294 N PHE B 281 SHEET 8 AA4 8 SER B 301 GLU B 306 -1 O ASP B 303 N THR B 295 SSBOND 1 CYS A 31 CYS A 340 1555 1555 2.02 SSBOND 2 CYS A 388 CYS A 392 1555 1555 2.02 SSBOND 3 CYS B 31 CYS B 340 1555 1555 2.04 SSBOND 4 CYS B 388 CYS B 392 1555 1555 2.03 LINK ND2 ASN A 173 C1 NAG C 1 1555 1555 1.44 LINK ND2 ASN A 259 C1 NAG D 1 1555 1555 1.41 LINK ND2 ASN B 173 C1 NAG E 1 1555 1555 1.44 LINK O4 NAG C 1 C1 NAG C 2 1555 1555 1.45 LINK O6 NAG C 1 C1 FUC C 3 1555 1555 1.44 LINK O4 NAG D 1 C1 NAG D 2 1555 1555 1.46 LINK O4 NAG E 1 C1 NAG E 2 1555 1555 1.44 LINK O6 NAG E 1 C1 FUC E 3 1555 1555 1.44 CISPEP 1 TYR A 36 PRO A 37 0 -2.03 CISPEP 2 LYS A 361 PRO A 362 0 2.85 CISPEP 3 ASP A 390 PRO A 391 0 -1.97 CISPEP 4 TYR B 36 PRO B 37 0 -0.88 CISPEP 5 LYS B 361 PRO B 362 0 3.17 CISPEP 6 ASP B 390 PRO B 391 0 -1.03 CRYST1 118.815 109.267 79.541 90.00 102.97 90.00 C 1 2 1 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.008416 0.000000 0.001939 0.00000 SCALE2 0.000000 0.009152 0.000000 0.00000 SCALE3 0.000000 0.000000 0.012901 0.00000