HEADER PLANT PROTEIN 14-DEC-16 5U87 TITLE NMR STRUCTURE OF THE PRECURSOR PROTEIN PAWS1 COMPRISING SFTI-1 AND A TITLE 2 SEED STORAGE ALBUMIN COMPND MOL_ID: 1; COMPND 2 MOLECULE: PREPROALBUMIN PAWS1; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: UNP RESIDUES 36-151; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HELIANTHUS ANNUUS; SOURCE 3 ORGANISM_COMMON: COMMON SUNFLOWER; SOURCE 4 ORGANISM_TAXID: 4232; SOURCE 5 GENE: PAWS1; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS TRYPSIN INHIBITOR, SFTI-1, SEED STORAGE ALBUMIN, STRUCTURE FROM KEYWDS 2 MOLMOL, PLANT PROTEIN EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR B.FRANKE,A.M.JAMES,M.MOBLI,M.L.COLGRAVE,J.S.MYLNE,K.J.ROSENGREN REVDAT 4 14-JUN-23 5U87 1 SSBOND REVDAT 3 01-JAN-20 5U87 1 REMARK REVDAT 2 27-SEP-17 5U87 1 COMPND REVDAT 1 01-MAR-17 5U87 0 JRNL AUTH B.FRANKE,A.M.JAMES,M.MOBLI,M.L.COLGRAVE,J.S.MYLNE, JRNL AUTH 2 K.J.ROSENGREN JRNL TITL NMR STRUCTURE OF THE PRECURSOR PROTEIN PAWS1 COMPRISING JRNL TITL 2 SFTI-1 AND A SEED STORAGE ALBUMIN JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS 1.2 REMARK 3 AUTHORS : BRUNGER, ADAMS, CLORE, GROS, NILGES AND READ REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: FINAL STRUCTURES WERE CALCULATED AND REMARK 3 WATERMINIMISED USING CARTESIAN DYNAMICS IN CNS. REMARK 4 REMARK 4 5U87 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 22-DEC-16. REMARK 100 THE DEPOSITION ID IS D_1000224959. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298 REMARK 210 PH : 4.62 REMARK 210 IONIC STRENGTH : 0 REMARK 210 PRESSURE : AMBIENT BAR REMARK 210 SAMPLE CONTENTS : 3.9 MG/ML [U-13C; U-15N] REMARK 210 PROALBUMIN PAWS1, 90% H2O/10% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 2D 1H-15N HSQC; 2D 1H-13C HSQC; REMARK 210 3D HNCACB; 3D CBCA(CO)NH; 3D REMARK 210 HNCO; 3D HBHA(CO)NH; 3D H(CC)(CO) REMARK 210 NH-TOCSY; 3D (H)CC(CO)NH-TOCSY; REMARK 210 3D 1H-15N NOESY; 3D 1H-13C NOESY REMARK 210 ALIPHATIC; 3D 1H-13C NOESY REMARK 210 AROMATIC REMARK 210 SPECTROMETER FIELD STRENGTH : 600 MHZ REMARK 210 SPECTROMETER MODEL : AVANCE REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : CYANA 3.0, CCPNMR, TOPSPIN 2.1 REMARK 210 METHOD USED : SIMULATED ANNEALING REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 50 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LOWEST REMARK 210 ENERGY REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 VAL A 47 -70.76 -123.41 REMARK 500 1 GLN A 90 -26.20 -158.43 REMARK 500 1 GLN A 113 44.68 -72.92 REMARK 500 2 LEU A 16 -56.72 -156.30 REMARK 500 2 ARG A 20 -53.97 -144.16 REMARK 500 2 MET A 45 29.88 -161.67 REMARK 500 2 VAL A 47 -61.96 -122.39 REMARK 500 2 GLN A 113 37.53 -71.70 REMARK 500 3 ASP A 14 -148.16 -161.79 REMARK 500 3 LEU A 16 -58.76 -141.96 REMARK 500 3 ASP A 17 92.59 -165.59 REMARK 500 3 MET A 45 26.34 -155.29 REMARK 500 3 GLN A 113 31.44 -74.74 REMARK 500 4 MET A 45 69.48 -116.91 REMARK 500 4 GLU A 48 29.42 -154.25 REMARK 500 4 GLN A 90 -58.11 -145.96 REMARK 500 4 GLN A 113 35.26 -72.70 REMARK 500 5 ASP A 14 -71.11 -139.00 REMARK 500 5 ARG A 20 -63.87 -133.34 REMARK 500 5 LEU A 43 90.63 -66.22 REMARK 500 5 GLN A 113 30.66 -67.20 REMARK 500 6 PRO A 13 45.96 -77.79 REMARK 500 6 ASP A 17 19.25 -140.71 REMARK 500 6 ARG A 20 -63.43 -132.26 REMARK 500 6 GLN A 113 35.03 -70.43 REMARK 500 7 ASP A 14 -64.15 -152.55 REMARK 500 7 LEU A 43 37.84 -80.10 REMARK 500 7 VAL A 47 -68.37 -93.67 REMARK 500 7 GLN A 113 35.79 -75.88 REMARK 500 8 LEU A 16 -50.49 -170.27 REMARK 500 8 ASP A 17 100.65 -170.08 REMARK 500 8 ARG A 20 -47.22 -140.91 REMARK 500 8 LEU A 43 96.25 -65.36 REMARK 500 8 GLN A 113 45.53 -82.83 REMARK 500 9 ASP A 14 -169.67 -167.21 REMARK 500 9 ARG A 44 -79.30 -105.15 REMARK 500 9 ASN A 111 60.67 60.31 REMARK 500 9 GLN A 113 26.96 -70.00 REMARK 500 10 PRO A 13 76.09 -67.16 REMARK 500 10 ARG A 20 -63.20 -127.84 REMARK 500 10 MET A 45 82.09 -151.70 REMARK 500 10 GLN A 113 43.79 -80.30 REMARK 500 11 VAL A 47 -58.56 -124.82 REMARK 500 11 ASN A 111 61.45 60.56 REMARK 500 11 GLN A 113 49.79 -78.87 REMARK 500 12 ASP A 14 -78.85 -120.20 REMARK 500 12 LEU A 16 -44.26 -130.24 REMARK 500 12 ASN A 111 61.47 60.69 REMARK 500 12 GLN A 113 43.74 -81.37 REMARK 500 13 PRO A 13 42.58 -77.00 REMARK 500 REMARK 500 THIS ENTRY HAS 81 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 7 ARG A 20 0.08 SIDE CHAIN REMARK 500 20 ARG A 2 0.08 SIDE CHAIN REMARK 500 20 ARG A 20 0.14 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 30209 RELATED DB: BMRB REMARK 900 NMR STRUCTURE OF THE PRECURSOR PROTEIN PAWS1 COMPRISING SFTI-1 AND REMARK 900 A SEED STORAGE ALBUMIN DBREF 5U87 A 1 116 UNP H2L0T2 H2L0T2_HELAN 36 151 SEQRES 1 A 116 GLY ARG CYS THR LYS SER ILE PRO PRO ILE CYS PHE PRO SEQRES 2 A 116 ASP GLY LEU ASP ASN PRO ARG GLY CYS GLN ILE ARG ILE SEQRES 3 A 116 GLN GLN LEU ASN HIS CYS GLN MET HIS LEU THR SER PHE SEQRES 4 A 116 ASP TYR LYS LEU ARG MET ALA VAL GLU ASN PRO LYS GLN SEQRES 5 A 116 GLN GLN HIS LEU SER LEU CYS CYS ASN GLN LEU GLN GLU SEQRES 6 A 116 VAL GLU LYS GLN CYS GLN CYS GLU ALA ILE LYS GLN VAL SEQRES 7 A 116 VAL GLU GLN ALA GLN LYS GLN LEU GLN GLN GLY GLN GLY SEQRES 8 A 116 GLY GLN GLN GLN VAL GLN GLN MET VAL LYS LYS ALA GLN SEQRES 9 A 116 MET LEU PRO ASN GLN CYS ASN LEU GLN CYS SER ILE HELIX 1 AA1 LEU A 29 SER A 38 1 10 HELIX 2 AA2 ASN A 49 GLN A 52 5 4 HELIX 3 AA3 GLN A 53 GLN A 64 1 12 HELIX 4 AA4 GLU A 67 GLN A 88 1 22 HELIX 5 AA5 GLY A 92 LYS A 101 1 10 HELIX 6 AA6 LYS A 102 GLN A 104 5 3 HELIX 7 AA7 MET A 105 CYS A 110 1 6 SHEET 1 AA1 2 ARG A 2 CYS A 3 0 SHEET 2 AA1 2 CYS A 11 PHE A 12 -1 O PHE A 12 N ARG A 2 SSBOND 1 CYS A 3 CYS A 11 1555 1555 2.04 SSBOND 2 CYS A 22 CYS A 70 1555 1555 2.03 SSBOND 3 CYS A 32 CYS A 59 1555 1555 2.02 SSBOND 4 CYS A 60 CYS A 110 1555 1555 2.04 SSBOND 5 CYS A 72 CYS A 114 1555 1555 2.03 CISPEP 1 ILE A 7 PRO A 8 1 0.99 CISPEP 2 ILE A 7 PRO A 8 2 -1.27 CISPEP 3 ILE A 7 PRO A 8 3 -0.95 CISPEP 4 ILE A 7 PRO A 8 4 -2.47 CISPEP 5 ILE A 7 PRO A 8 5 -1.21 CISPEP 6 ILE A 7 PRO A 8 6 -0.19 CISPEP 7 ILE A 7 PRO A 8 7 0.01 CISPEP 8 ILE A 7 PRO A 8 8 -1.16 CISPEP 9 ILE A 7 PRO A 8 9 -3.37 CISPEP 10 ILE A 7 PRO A 8 10 -0.76 CISPEP 11 ILE A 7 PRO A 8 11 -1.96 CISPEP 12 ILE A 7 PRO A 8 12 0.72 CISPEP 13 ILE A 7 PRO A 8 13 -1.24 CISPEP 14 ILE A 7 PRO A 8 14 1.09 CISPEP 15 ILE A 7 PRO A 8 15 0.65 CISPEP 16 ILE A 7 PRO A 8 16 -1.29 CISPEP 17 ILE A 7 PRO A 8 17 0.08 CISPEP 18 ILE A 7 PRO A 8 18 -1.27 CISPEP 19 ILE A 7 PRO A 8 19 -0.72 CISPEP 20 ILE A 7 PRO A 8 20 0.09 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1