HEADER OXIDOREDUCTASE 14-DEC-16 5U8P TITLE CRYSTAL STRUCTURE OF A SHORT CHAIN DEHYDROGENASE FROM BURKHOLDERIA TITLE 2 CENOCEPACIA J2315 IN COMPLEX WITH NAD COMPND MOL_ID: 1; COMPND 2 MOLECULE: SHORT CHAIN DEHYDROGENASE; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: RESIDUES 28-328; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: BURKHOLDERIA CENOCEPACIA (STRAIN ATCC BAA-245 / SOURCE 3 DSM 16553 / LMG 16656 / NCTC 13227 / J2315 / CF5610); SOURCE 4 ORGANISM_TAXID: 216591; SOURCE 5 STRAIN: ATCC BAA-245 / DSM 16553 / LMG 16656 / NCTC 13227 / J2315 / SOURCE 6 CF5610; SOURCE 7 ATCC: BAA-245; SOURCE 8 GENE: BCAL1205; SOURCE 9 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 10 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 11 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 12 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 13 EXPRESSION_SYSTEM_PLASMID: BUCEA.00010.V.B2 KEYWDS SSGCID, STRUCTURAL GENOMICS, SEATTLE STRUCTURAL GENOMICS CENTER FOR KEYWDS 2 INFECTIOUS DISEASE, OXIDOREDUCTASE EXPDTA X-RAY DIFFRACTION AUTHOR SEATTLE STRUCTURAL GENOMICS CENTER FOR INFECTIOUS DISEASE (SSGCID) REVDAT 2 04-OCT-23 5U8P 1 LINK REVDAT 1 15-FEB-17 5U8P 0 JRNL AUTH J.ABENDROTH,S.L.DELKER,D.D.LORIMER,T.E.EDWARDS JRNL TITL CRYSTAL STRUCTURE OF A SHORT CHAIN DEHYDROGENASE FROM JRNL TITL 2 BURKHOLDERIA CENOCEPACIA J2315 IN COMPLEX WITH NAD JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.40 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (DEV_2650) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.40 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 31.42 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.360 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.1 REMARK 3 NUMBER OF REFLECTIONS : 135742 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.117 REMARK 3 R VALUE (WORKING SET) : 0.117 REMARK 3 FREE R VALUE : 0.137 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 1.500 REMARK 3 FREE R VALUE TEST SET COUNT : 2031 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 31.4236 - 3.4513 1.00 9088 149 0.1245 0.1317 REMARK 3 2 3.4513 - 2.7399 1.00 9040 132 0.1315 0.1479 REMARK 3 3 2.7399 - 2.3937 1.00 9000 150 0.1260 0.1358 REMARK 3 4 2.3937 - 2.1749 1.00 8996 104 0.1160 0.1228 REMARK 3 5 2.1749 - 2.0190 1.00 8958 148 0.1124 0.1215 REMARK 3 6 2.0190 - 1.9000 1.00 8989 142 0.1086 0.1398 REMARK 3 7 1.9000 - 1.8049 0.99 8900 149 0.1037 0.1185 REMARK 3 8 1.8049 - 1.7263 0.99 8895 134 0.1006 0.1312 REMARK 3 9 1.7263 - 1.6599 0.99 8907 124 0.0966 0.1312 REMARK 3 10 1.6599 - 1.6026 0.99 8871 135 0.0939 0.1359 REMARK 3 11 1.6026 - 1.5525 0.99 8879 134 0.0975 0.1236 REMARK 3 12 1.5525 - 1.5081 0.98 8789 130 0.1053 0.1581 REMARK 3 13 1.5081 - 1.4684 0.98 8821 123 0.1146 0.1512 REMARK 3 14 1.4684 - 1.4326 0.98 8801 136 0.1291 0.1883 REMARK 3 15 1.4326 - 1.4000 0.98 8777 141 0.1514 0.2099 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.090 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 12.120 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 8.32 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 12.99 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.008 4745 REMARK 3 ANGLE : 1.010 6557 REMARK 3 CHIRALITY : 0.082 735 REMARK 3 PLANARITY : 0.007 918 REMARK 3 DIHEDRAL : 16.295 1842 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5U8P COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 16-DEC-16. REMARK 100 THE DEPOSITION ID IS D_1000225502. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 29-NOV-16 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 21-ID-G REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97856 REMARK 200 MONOCHROMATOR : DIAMOND [111] REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : RAYONIX MX-300 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 135756 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.400 REMARK 200 RESOLUTION RANGE LOW (A) : 31.416 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.9 REMARK 200 DATA REDUNDANCY : 4.179 REMARK 200 R MERGE (I) : 0.06200 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 15.7300 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.40 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.44 REMARK 200 COMPLETENESS FOR SHELL (%) : 97.6 REMARK 200 DATA REDUNDANCY IN SHELL : 3.68 REMARK 200 R MERGE FOR SHELL (I) : 0.29600 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 4.520 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 5JYD, NATIVE STRUCTURE OF SAME TARAGET REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 54.90 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.73 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: MORPHEUS SCREEN, D9: 10% W/V PEG 20 REMARK 280 000, 20% V/V PEG MME 550: 20MM OF EACH 1,6-HEXANEDIOL, 1-BUTANOL, REMARK 280 (RS)-1,2- PROPANEDIOL, 2-PROPANOL, 1,4-BUTANEDIOL, 1,3- REMARK 280 PROPANEDIOL: 100MM BICINE/TRIZMA BASE PH 8.5: REMARK 280 BUCEA.00010.V.B2.PS01749 AT 21.12 MG/ML + 4MM NAD: CRYO: DIRECT: REMARK 280 TRAY 2486004D9, PUCK PLT0-10, VAPOR DIFFUSION, SITTING DROP, REMARK 280 TEMPERATURE 290K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 46.08000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 51.54000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 46.08000 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 51.54000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 20440 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 32100 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -146.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 887 LIES ON A SPECIAL POSITION. REMARK 375 HOH B 755 LIES ON A SPECIAL POSITION. REMARK 375 HOH B 809 LIES ON A SPECIAL POSITION. REMARK 375 HOH B 875 LIES ON A SPECIAL POSITION. REMARK 375 HOH B 884 LIES ON A SPECIAL POSITION. REMARK 375 HOH B 886 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 19 REMARK 465 ALA A 20 REMARK 465 HIS A 21 REMARK 465 HIS A 22 REMARK 465 HIS A 23 REMARK 465 HIS A 24 REMARK 465 HIS A 25 REMARK 465 HIS A 26 REMARK 465 MET A 27 REMARK 465 ALA A 28 REMARK 465 VAL A 29 REMARK 465 ASP A 30 REMARK 465 ALA A 31 REMARK 465 PRO A 32 REMARK 465 PRO A 33 REMARK 465 ALA A 34 REMARK 465 ALA A 35 REMARK 465 GLN A 36 REMARK 465 MET B 19 REMARK 465 ALA B 20 REMARK 465 HIS B 21 REMARK 465 HIS B 22 REMARK 465 HIS B 23 REMARK 465 HIS B 24 REMARK 465 HIS B 25 REMARK 465 HIS B 26 REMARK 465 MET B 27 REMARK 465 ALA B 28 REMARK 465 VAL B 29 REMARK 465 ASP B 30 REMARK 465 ALA B 31 REMARK 465 PRO B 32 REMARK 465 PRO B 33 REMARK 465 ALA B 34 REMARK 465 ALA B 35 REMARK 465 GLN B 36 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ARG A 76 CG CD NE CZ NH1 NH2 REMARK 470 ARG B 76 CG CD NE CZ NH1 NH2 REMARK 470 GLU B 279 CG CD OE1 OE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 507 O HOH A 520 2.04 REMARK 500 O HOH B 523 O HOH B 745 2.11 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 245 NE - CZ - NH1 ANGL. DEV. = 3.2 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ARG A 78 28.38 -140.10 REMARK 500 LEU A 81 38.57 -140.56 REMARK 500 THR A 219 -145.53 -103.09 REMARK 500 ARG B 78 31.75 -141.50 REMARK 500 LEU B 81 39.55 -141.12 REMARK 500 THR B 219 -145.75 -104.92 REMARK 500 THR B 311 55.32 -90.14 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 896 DISTANCE = 6.01 ANGSTROMS REMARK 525 HOH A 897 DISTANCE = 6.33 ANGSTROMS REMARK 525 HOH A 898 DISTANCE = 6.34 ANGSTROMS REMARK 525 HOH B 883 DISTANCE = 5.90 ANGSTROMS REMARK 525 HOH B 884 DISTANCE = 5.96 ANGSTROMS REMARK 525 HOH B 885 DISTANCE = 6.01 ANGSTROMS REMARK 525 HOH B 886 DISTANCE = 6.74 ANGSTROMS REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 401 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 92 OD2 REMARK 620 2 SER A 93 OG 88.5 REMARK 620 3 GLU A 118 OE2 93.2 171.7 REMARK 620 4 NAD A 400 O3B 94.2 84.0 87.8 REMARK 620 5 HOH A 533 O 174.7 92.1 86.9 91.1 REMARK 620 6 HOH A 550 O 86.4 94.0 94.2 177.9 88.3 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG B 401 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP B 92 OD2 REMARK 620 2 SER B 93 OG 88.8 REMARK 620 3 GLU B 118 OE2 93.0 171.6 REMARK 620 4 NAD B 400 O3B 94.9 83.8 87.8 REMARK 620 5 HOH B 525 O 174.0 91.9 87.3 91.0 REMARK 620 6 HOH B 539 O 86.0 93.2 95.1 176.9 88.0 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue NAD A 400 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MG A 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue NAD B 400 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MG B 401 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: SSGCID-BUCEA.00010.V RELATED DB: TARGETTRACK REMARK 900 RELATED ID: 5JYD RELATED DB: PDB DBREF 5U8P A 28 328 UNP B4EEE3 B4EEE3_BURCJ 28 328 DBREF 5U8P B 28 328 UNP B4EEE3 B4EEE3_BURCJ 28 328 SEQADV 5U8P MET A 19 UNP B4EEE3 INITIATING METHIONINE SEQADV 5U8P ALA A 20 UNP B4EEE3 EXPRESSION TAG SEQADV 5U8P HIS A 21 UNP B4EEE3 EXPRESSION TAG SEQADV 5U8P HIS A 22 UNP B4EEE3 EXPRESSION TAG SEQADV 5U8P HIS A 23 UNP B4EEE3 EXPRESSION TAG SEQADV 5U8P HIS A 24 UNP B4EEE3 EXPRESSION TAG SEQADV 5U8P HIS A 25 UNP B4EEE3 EXPRESSION TAG SEQADV 5U8P HIS A 26 UNP B4EEE3 EXPRESSION TAG SEQADV 5U8P MET A 27 UNP B4EEE3 EXPRESSION TAG SEQADV 5U8P MET B 19 UNP B4EEE3 INITIATING METHIONINE SEQADV 5U8P ALA B 20 UNP B4EEE3 EXPRESSION TAG SEQADV 5U8P HIS B 21 UNP B4EEE3 EXPRESSION TAG SEQADV 5U8P HIS B 22 UNP B4EEE3 EXPRESSION TAG SEQADV 5U8P HIS B 23 UNP B4EEE3 EXPRESSION TAG SEQADV 5U8P HIS B 24 UNP B4EEE3 EXPRESSION TAG SEQADV 5U8P HIS B 25 UNP B4EEE3 EXPRESSION TAG SEQADV 5U8P HIS B 26 UNP B4EEE3 EXPRESSION TAG SEQADV 5U8P MET B 27 UNP B4EEE3 EXPRESSION TAG SEQRES 1 A 310 MET ALA HIS HIS HIS HIS HIS HIS MET ALA VAL ASP ALA SEQRES 2 A 310 PRO PRO ALA ALA GLN GLY LEU THR ASN PRO VAL ASP LEU SEQRES 3 A 310 TYR PRO LYS PRO PRO PHE PRO HIS GLN VAL GLN ALA PRO SEQRES 4 A 310 PRO GLY LEU ALA SER ARG MET GLN PRO ARG PRO ASP HIS SEQRES 5 A 310 GLY GLU GLN SER TYR ARG GLY ARG GLY ARG LEU VAL GLY SEQRES 6 A 310 ARG LYS THR LEU VAL THR GLY GLY ASP SER GLY ILE GLY SEQRES 7 A 310 ARG ALA ALA ALA ILE ALA PHE ALA ARG GLU GLY ALA ASP SEQRES 8 A 310 VAL ALA ILE GLY TYR LEU PRO VAL GLU GLU SER ASP ALA SEQRES 9 A 310 ARG GLU VAL VAL ALA LEU ILE ARG ALA ALA GLY ARG GLN SEQRES 10 A 310 ALA VAL ALA LEU PRO GLY ASP ILE ARG ASP GLU THR PHE SEQRES 11 A 310 CYS GLN ARG LEU VAL ALA ARG ALA ALA GLU ALA LEU GLY SEQRES 12 A 310 GLY LEU ASP ILE LEU VAL ASN ASN ALA ALA ARG GLN GLN SEQRES 13 A 310 ALA LEU ASP SER ILE GLY GLU MET THR THR GLU HIS PHE SEQRES 14 A 310 ASP ALA THR VAL LYS THR ASN LEU TYR GLY MET PHE TRP SEQRES 15 A 310 ILE THR LYS ALA ALA ILE PRO HIS LEU PRO PRO GLY ALA SEQRES 16 A 310 SER ILE ILE ASN THR THR SER VAL GLN ALA VAL ARG ALA SEQRES 17 A 310 SER ALA ASN LEU LEU ASP TYR ALA THR THR LYS ALA GLY SEQRES 18 A 310 ILE ILE ALA PHE THR ARG SER LEU ALA LYS GLN LEU GLY SEQRES 19 A 310 PRO ARG GLY ILE ARG VAL ASN ALA VAL ALA PRO GLY PRO SEQRES 20 A 310 TYR TRP THR PRO LEU GLN SER SER GLY GLY GLN PRO PRO SEQRES 21 A 310 GLU THR VAL VAL ASN TYR ALA ALA GLY SER PRO TYR GLY SEQRES 22 A 310 ARG PRO GLY GLN PRO ALA GLU ILE ALA PRO LEU TYR VAL SEQRES 23 A 310 ALA LEU ALA ALA SER GLU THR SER TYR ALA ASN GLY GLN SEQRES 24 A 310 VAL TRP GLY ALA ASP GLY GLY LEU GLY ILE PHE SEQRES 1 B 310 MET ALA HIS HIS HIS HIS HIS HIS MET ALA VAL ASP ALA SEQRES 2 B 310 PRO PRO ALA ALA GLN GLY LEU THR ASN PRO VAL ASP LEU SEQRES 3 B 310 TYR PRO LYS PRO PRO PHE PRO HIS GLN VAL GLN ALA PRO SEQRES 4 B 310 PRO GLY LEU ALA SER ARG MET GLN PRO ARG PRO ASP HIS SEQRES 5 B 310 GLY GLU GLN SER TYR ARG GLY ARG GLY ARG LEU VAL GLY SEQRES 6 B 310 ARG LYS THR LEU VAL THR GLY GLY ASP SER GLY ILE GLY SEQRES 7 B 310 ARG ALA ALA ALA ILE ALA PHE ALA ARG GLU GLY ALA ASP SEQRES 8 B 310 VAL ALA ILE GLY TYR LEU PRO VAL GLU GLU SER ASP ALA SEQRES 9 B 310 ARG GLU VAL VAL ALA LEU ILE ARG ALA ALA GLY ARG GLN SEQRES 10 B 310 ALA VAL ALA LEU PRO GLY ASP ILE ARG ASP GLU THR PHE SEQRES 11 B 310 CYS GLN ARG LEU VAL ALA ARG ALA ALA GLU ALA LEU GLY SEQRES 12 B 310 GLY LEU ASP ILE LEU VAL ASN ASN ALA ALA ARG GLN GLN SEQRES 13 B 310 ALA LEU ASP SER ILE GLY GLU MET THR THR GLU HIS PHE SEQRES 14 B 310 ASP ALA THR VAL LYS THR ASN LEU TYR GLY MET PHE TRP SEQRES 15 B 310 ILE THR LYS ALA ALA ILE PRO HIS LEU PRO PRO GLY ALA SEQRES 16 B 310 SER ILE ILE ASN THR THR SER VAL GLN ALA VAL ARG ALA SEQRES 17 B 310 SER ALA ASN LEU LEU ASP TYR ALA THR THR LYS ALA GLY SEQRES 18 B 310 ILE ILE ALA PHE THR ARG SER LEU ALA LYS GLN LEU GLY SEQRES 19 B 310 PRO ARG GLY ILE ARG VAL ASN ALA VAL ALA PRO GLY PRO SEQRES 20 B 310 TYR TRP THR PRO LEU GLN SER SER GLY GLY GLN PRO PRO SEQRES 21 B 310 GLU THR VAL VAL ASN TYR ALA ALA GLY SER PRO TYR GLY SEQRES 22 B 310 ARG PRO GLY GLN PRO ALA GLU ILE ALA PRO LEU TYR VAL SEQRES 23 B 310 ALA LEU ALA ALA SER GLU THR SER TYR ALA ASN GLY GLN SEQRES 24 B 310 VAL TRP GLY ALA ASP GLY GLY LEU GLY ILE PHE HET NAD A 400 44 HET MG A 401 1 HET NAD B 400 44 HET MG B 401 1 HETNAM NAD NICOTINAMIDE-ADENINE-DINUCLEOTIDE HETNAM MG MAGNESIUM ION FORMUL 3 NAD 2(C21 H27 N7 O14 P2) FORMUL 4 MG 2(MG 2+) FORMUL 7 HOH *784(H2 O) HELIX 1 AA1 LEU A 60 MET A 64 5 5 HELIX 2 AA2 SER A 93 GLU A 106 1 14 HELIX 3 AA3 LEU A 115 VAL A 117 5 3 HELIX 4 AA4 GLU A 118 ALA A 132 1 15 HELIX 5 AA5 ASP A 145 GLY A 161 1 17 HELIX 6 AA6 SER A 178 MET A 182 5 5 HELIX 7 AA7 THR A 183 LEU A 195 1 13 HELIX 8 AA8 LEU A 195 ILE A 206 1 12 HELIX 9 AA9 PRO A 207 LEU A 209 5 3 HELIX 10 AB1 VAL A 221 ALA A 226 1 6 HELIX 11 AB2 LEU A 230 GLY A 252 1 23 HELIX 12 AB3 PRO A 253 GLY A 255 5 3 HELIX 13 AB4 THR A 268 SER A 273 1 6 HELIX 14 AB5 PRO A 277 ASN A 283 1 7 HELIX 15 AB6 GLN A 295 GLU A 298 5 4 HELIX 16 AB7 ILE A 299 ALA A 308 1 10 HELIX 17 AB8 LEU B 60 MET B 64 5 5 HELIX 18 AB9 SER B 93 GLU B 106 1 14 HELIX 19 AC1 LEU B 115 VAL B 117 5 3 HELIX 20 AC2 GLU B 118 ALA B 132 1 15 HELIX 21 AC3 ASP B 145 GLY B 161 1 17 HELIX 22 AC4 SER B 178 MET B 182 5 5 HELIX 23 AC5 THR B 183 LEU B 195 1 13 HELIX 24 AC6 LEU B 195 ILE B 206 1 12 HELIX 25 AC7 PRO B 207 LEU B 209 5 3 HELIX 26 AC8 VAL B 221 ALA B 226 1 6 HELIX 27 AC9 LEU B 230 GLY B 252 1 23 HELIX 28 AD1 PRO B 253 GLY B 255 5 3 HELIX 29 AD2 THR B 268 SER B 273 1 6 HELIX 30 AD3 PRO B 277 ASN B 283 1 7 HELIX 31 AD4 GLN B 295 GLU B 298 5 4 HELIX 32 AD5 ILE B 299 ALA B 308 1 10 SHEET 1 AA1 7 ALA A 136 PRO A 140 0 SHEET 2 AA1 7 ASP A 109 TYR A 114 1 N ILE A 112 O LEU A 139 SHEET 3 AA1 7 LYS A 85 VAL A 88 1 N THR A 86 O ALA A 111 SHEET 4 AA1 7 ILE A 165 ASN A 168 1 O VAL A 167 N LEU A 87 SHEET 5 AA1 7 SER A 214 THR A 218 1 O ILE A 216 N LEU A 166 SHEET 6 AA1 7 ARG A 257 PRO A 263 1 O ARG A 257 N ILE A 215 SHEET 7 AA1 7 VAL A 318 ALA A 321 1 O TRP A 319 N ALA A 260 SHEET 1 AA2 7 ALA B 136 PRO B 140 0 SHEET 2 AA2 7 ASP B 109 TYR B 114 1 N ILE B 112 O VAL B 137 SHEET 3 AA2 7 LYS B 85 VAL B 88 1 N THR B 86 O ALA B 111 SHEET 4 AA2 7 ILE B 165 ASN B 168 1 O VAL B 167 N LEU B 87 SHEET 5 AA2 7 SER B 214 THR B 218 1 O ILE B 216 N LEU B 166 SHEET 6 AA2 7 ARG B 257 PRO B 263 1 O ARG B 257 N ILE B 215 SHEET 7 AA2 7 VAL B 318 ALA B 321 1 O TRP B 319 N ALA B 260 LINK OD2 ASP A 92 MG MG A 401 1555 1555 2.03 LINK OG SER A 93 MG MG A 401 1555 1555 2.14 LINK OE2 GLU A 118 MG MG A 401 1555 1555 2.05 LINK O3B NAD A 400 MG MG A 401 1555 1555 2.17 LINK MG MG A 401 O HOH A 533 1555 1555 2.04 LINK MG MG A 401 O HOH A 550 1555 1555 2.08 LINK OD2 ASP B 92 MG MG B 401 1555 1555 2.01 LINK OG SER B 93 MG MG B 401 1555 1555 2.15 LINK OE2 GLU B 118 MG MG B 401 1555 1555 2.07 LINK O3B NAD B 400 MG MG B 401 1555 1555 2.18 LINK MG MG B 401 O HOH B 525 1555 1555 2.06 LINK MG MG B 401 O HOH B 539 1555 1555 2.08 CISPEP 1 PRO A 48 PRO A 49 0 4.56 CISPEP 2 PRO A 57 PRO A 58 0 4.67 CISPEP 3 GLN A 65 PRO A 66 0 3.38 CISPEP 4 PRO B 48 PRO B 49 0 3.27 CISPEP 5 PRO B 57 PRO B 58 0 4.33 CISPEP 6 GLN B 65 PRO B 66 0 3.48 SITE 1 AC1 35 GLY A 90 ASP A 92 SER A 93 GLY A 94 SITE 2 AC1 35 ILE A 95 TYR A 114 LEU A 115 GLU A 118 SITE 3 AC1 35 GLY A 141 ASP A 142 ILE A 143 ASN A 169 SITE 4 AC1 35 ALA A 170 ALA A 171 THR A 218 THR A 219 SITE 5 AC1 35 SER A 220 TYR A 233 LYS A 237 PRO A 263 SITE 6 AC1 35 GLY A 264 PRO A 265 TYR A 266 THR A 268 SITE 7 AC1 35 PRO A 269 LEU A 270 GLN A 271 TYR A 284 SITE 8 AC1 35 MG A 401 HOH A 503 HOH A 533 HOH A 599 SITE 9 AC1 35 HOH A 629 HOH A 638 HOH A 731 SITE 1 AC2 6 ASP A 92 SER A 93 GLU A 118 NAD A 400 SITE 2 AC2 6 HOH A 533 HOH A 550 SITE 1 AC3 36 GLY B 90 ASP B 92 SER B 93 GLY B 94 SITE 2 AC3 36 ILE B 95 TYR B 114 LEU B 115 GLU B 118 SITE 3 AC3 36 GLY B 141 ASP B 142 ILE B 143 ASN B 169 SITE 4 AC3 36 ALA B 170 ALA B 171 THR B 218 THR B 219 SITE 5 AC3 36 SER B 220 TYR B 233 LYS B 237 PRO B 263 SITE 6 AC3 36 GLY B 264 PRO B 265 TYR B 266 THR B 268 SITE 7 AC3 36 PRO B 269 LEU B 270 GLN B 271 TYR B 284 SITE 8 AC3 36 MG B 401 HOH B 525 HOH B 532 HOH B 594 SITE 9 AC3 36 HOH B 609 HOH B 620 HOH B 718 HOH B 725 SITE 1 AC4 6 ASP B 92 SER B 93 GLU B 118 NAD B 400 SITE 2 AC4 6 HOH B 525 HOH B 539 CRYST1 92.160 103.080 87.000 90.00 120.68 90.00 C 1 2 1 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.010851 0.000000 0.006439 0.00000 SCALE2 0.000000 0.009701 0.000000 0.00000 SCALE3 0.000000 0.000000 0.013365 0.00000