HEADER TRANSFERASE 15-DEC-16 5U99 TITLE TRANSITION STATE ANALYSIS OF ADENOSINE TRIPHOSPHATE TITLE 2 PHOSPHORIBOSYLTRANSFERASE COMPND MOL_ID: 1; COMPND 2 MOLECULE: ATP PHOSPHORIBOSYLTRANSFERASE; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: ATP-PRTASE; COMPND 5 EC: 2.4.2.17; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MYCOBACTERIUM TUBERCULOSIS (STRAIN ATCC 25618 / SOURCE 3 H37RV); SOURCE 4 ORGANISM_TAXID: 83332; SOURCE 5 STRAIN: ATCC 25618 / H37RV; SOURCE 6 GENE: HISG, RV2121C, MTCY261.17C; SOURCE 7 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21; SOURCE 8 EXPRESSION_SYSTEM_TAXID: 511693; SOURCE 9 EXPRESSION_SYSTEM_VARIANT: PLYSS; SOURCE 10 EXPRESSION_SYSTEM_CELL_LINE: BL21 STAR KEYWDS ATP-PRT, HISG, ADENOSINE TRIPHOSPHATE PHOSPHORIBOSYLTRANSFERASE, KEYWDS 2 TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR G.-J.MOGGRE,M.B.POULIN,P.C.TYLER,V.L.SCHRAMM,E.J.PARKER REVDAT 4 04-OCT-23 5U99 1 LINK REVDAT 3 26-FEB-20 5U99 1 REMARK REVDAT 2 01-NOV-17 5U99 1 JRNL REVDAT 1 20-SEP-17 5U99 0 JRNL AUTH G.J.MOGGRE,M.B.POULIN,P.C.TYLER,V.L.SCHRAMM,E.J.PARKER JRNL TITL TRANSITION STATE ANALYSIS OF ADENOSINE TRIPHOSPHATE JRNL TITL 2 PHOSPHORIBOSYLTRANSFERASE. JRNL REF ACS CHEM. BIOL. V. 12 2662 2017 JRNL REFN ESSN 1554-8937 JRNL PMID 28872824 JRNL DOI 10.1021/ACSCHEMBIO.7B00484 REMARK 2 REMARK 2 RESOLUTION. 2.40 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0158 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.40 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 80.43 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 3 NUMBER OF REFLECTIONS : 14540 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.217 REMARK 3 R VALUE (WORKING SET) : 0.216 REMARK 3 FREE R VALUE : 0.251 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.900 REMARK 3 FREE R VALUE TEST SET COUNT : 747 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.40 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.46 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1069 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 100.0 REMARK 3 BIN R VALUE (WORKING SET) : 0.3170 REMARK 3 BIN FREE R VALUE SET COUNT : 61 REMARK 3 BIN FREE R VALUE : 0.3570 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1981 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 48 REMARK 3 SOLVENT ATOMS : 28 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 55.55 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 1.64000 REMARK 3 B22 (A**2) : 1.64000 REMARK 3 B33 (A**2) : -5.33000 REMARK 3 B12 (A**2) : 0.82000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.308 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.232 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.198 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 16.133 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.944 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.934 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2096 ; 0.010 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 1924 ; 0.002 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 2873 ; 1.519 ; 2.003 REMARK 3 BOND ANGLES OTHERS (DEGREES): 4400 ; 0.958 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 279 ; 6.929 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 74 ;40.637 ;23.378 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 288 ;14.881 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 15 ;21.034 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 347 ; 0.080 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2358 ; 0.005 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 420 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1122 ; 1.141 ; 3.586 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 1121 ; 1.141 ; 3.585 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 1399 ; 1.980 ; 5.373 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 1400 ; 1.979 ; 5.375 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 973 ; 1.303 ; 3.761 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 974 ; 1.302 ; 3.761 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 1475 ; 2.063 ; 5.615 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): 2153 ; 4.401 ;42.811 REMARK 3 LONG RANGE B OTHER ATOMS (A**2): 2151 ; 4.389 ;42.785 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 1 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A -1 A 284 REMARK 3 ORIGIN FOR THE GROUP (A): -21.6900 4.5235 -36.1812 REMARK 3 T TENSOR REMARK 3 T11: 0.0876 T22: 0.1263 REMARK 3 T33: 0.1406 T12: 0.0031 REMARK 3 T13: 0.0901 T23: -0.0047 REMARK 3 L TENSOR REMARK 3 L11: 1.4725 L22: 1.1684 REMARK 3 L33: 1.6532 L12: 0.0761 REMARK 3 L13: 0.7157 L23: 0.1385 REMARK 3 S TENSOR REMARK 3 S11: 0.1187 S12: -0.2718 S13: -0.0119 REMARK 3 S21: 0.1218 S22: 0.0070 S23: 0.1194 REMARK 3 S31: -0.1513 S32: -0.2673 S33: -0.1257 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 5U99 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 21-DEC-16. REMARK 100 THE DEPOSITION ID IS D_1000225503. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 25-MAR-15 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : AUSTRALIAN SYNCHROTRON REMARK 200 BEAMLINE : MX1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9537 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 210R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 15289 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.400 REMARK 200 RESOLUTION RANGE LOW (A) : 80.430 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 20.00 REMARK 200 R MERGE (I) : 0.14300 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 20.0000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PDB:1NH7 REMARK 200 REMARK 200 REMARK: CRYSTALS GREW AS MEDIUM SIZES PRISMS OVERNIGHT REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 61.09 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.16 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 1.6 M MAGNESIUM SULPHATE AND 0.1 M, 2 REMARK 280 -(N-MORPHOLINO)ETHANESULFONIC ACID, PH 6.5, VAPOR DIFFUSION, REMARK 280 HANGING DROP, TEMPERATURE 293.15K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: H 3 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z REMARK 290 3555 -X+Y,-X,Z REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z REMARK 290 6555 -X,-X+Y,-Z REMARK 290 7555 X+2/3,Y+1/3,Z+1/3 REMARK 290 8555 -Y+2/3,X-Y+1/3,Z+1/3 REMARK 290 9555 -X+Y+2/3,-X+1/3,Z+1/3 REMARK 290 10555 Y+2/3,X+1/3,-Z+1/3 REMARK 290 11555 X-Y+2/3,-Y+1/3,-Z+1/3 REMARK 290 12555 -X+2/3,-X+Y+1/3,-Z+1/3 REMARK 290 13555 X+1/3,Y+2/3,Z+2/3 REMARK 290 14555 -Y+1/3,X-Y+2/3,Z+2/3 REMARK 290 15555 -X+Y+1/3,-X+2/3,Z+2/3 REMARK 290 16555 Y+1/3,X+2/3,-Z+2/3 REMARK 290 17555 X-Y+1/3,-Y+2/3,-Z+2/3 REMARK 290 18555 -X+1/3,-X+Y+2/3,-Z+2/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 7 1.000000 0.000000 0.000000 67.37900 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 38.90128 REMARK 290 SMTRY3 7 0.000000 0.000000 1.000000 37.00167 REMARK 290 SMTRY1 8 -0.500000 -0.866025 0.000000 67.37900 REMARK 290 SMTRY2 8 0.866025 -0.500000 0.000000 38.90128 REMARK 290 SMTRY3 8 0.000000 0.000000 1.000000 37.00167 REMARK 290 SMTRY1 9 -0.500000 0.866025 0.000000 67.37900 REMARK 290 SMTRY2 9 -0.866025 -0.500000 0.000000 38.90128 REMARK 290 SMTRY3 9 0.000000 0.000000 1.000000 37.00167 REMARK 290 SMTRY1 10 -0.500000 0.866025 0.000000 67.37900 REMARK 290 SMTRY2 10 0.866025 0.500000 0.000000 38.90128 REMARK 290 SMTRY3 10 0.000000 0.000000 -1.000000 37.00167 REMARK 290 SMTRY1 11 1.000000 0.000000 0.000000 67.37900 REMARK 290 SMTRY2 11 0.000000 -1.000000 0.000000 38.90128 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 37.00167 REMARK 290 SMTRY1 12 -0.500000 -0.866025 0.000000 67.37900 REMARK 290 SMTRY2 12 -0.866025 0.500000 0.000000 38.90128 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 37.00167 REMARK 290 SMTRY1 13 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 13 0.000000 1.000000 0.000000 77.80257 REMARK 290 SMTRY3 13 0.000000 0.000000 1.000000 74.00333 REMARK 290 SMTRY1 14 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 14 0.866025 -0.500000 0.000000 77.80257 REMARK 290 SMTRY3 14 0.000000 0.000000 1.000000 74.00333 REMARK 290 SMTRY1 15 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 15 -0.866025 -0.500000 0.000000 77.80257 REMARK 290 SMTRY3 15 0.000000 0.000000 1.000000 74.00333 REMARK 290 SMTRY1 16 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 16 0.866025 0.500000 0.000000 77.80257 REMARK 290 SMTRY3 16 0.000000 0.000000 -1.000000 74.00333 REMARK 290 SMTRY1 17 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 17 0.000000 -1.000000 0.000000 77.80257 REMARK 290 SMTRY3 17 0.000000 0.000000 -1.000000 74.00333 REMARK 290 SMTRY1 18 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 18 -0.866025 0.500000 0.000000 77.80257 REMARK 290 SMTRY3 18 0.000000 0.000000 -1.000000 74.00333 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: HEXAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: HEXAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 24810 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 64760 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -504.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 350 BIOMT2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 350 BIOMT2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 350 BIOMT3 3 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 350 BIOMT2 4 0.866025 0.500000 0.000000 0.00000 REMARK 350 BIOMT3 4 0.000000 0.000000 -1.000000 -111.00500 REMARK 350 BIOMT1 5 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT3 5 0.000000 0.000000 -1.000000 -111.00500 REMARK 350 BIOMT1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 350 BIOMT2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 350 BIOMT3 6 0.000000 0.000000 -1.000000 -111.00500 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 MG MG A 305 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 186 REMARK 465 THR A 187 REMARK 465 ASP A 188 REMARK 465 GLY A 189 REMARK 465 GLN A 190 REMARK 465 ASP A 191 REMARK 465 LEU A 242 REMARK 465 ALA A 243 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLU A 18 CG CD OE1 OE2 REMARK 470 ARG A 27 CG CD NE CZ NH1 NH2 REMARK 470 THR A 29 OG1 CG2 REMARK 470 ASP A 30 CG OD1 OD2 REMARK 470 SER A 31 OG REMARK 470 LYS A 32 CG CD CE NZ REMARK 470 GLN A 78 CG CD OE1 NE2 REMARK 470 ARG A 80 CG CD NE CZ NH1 NH2 REMARK 470 ARG A 100 CG CD NE CZ NH1 NH2 REMARK 470 ASN A 101 CG OD1 ND2 REMARK 470 LEU A 107 CG CD1 CD2 REMARK 470 ARG A 121 CG CD NE CZ NH1 NH2 REMARK 470 GLU A 130 CG CD OE1 OE2 REMARK 470 GLN A 145 CG CD OE1 NE2 REMARK 470 ARG A 160 CG CD NE CZ NH1 NH2 REMARK 470 GLN A 164 CG CD OE1 NE2 REMARK 470 ASP A 166 CG OD1 OD2 REMARK 470 ARG A 184 CG CD NE CZ NH1 NH2 REMARK 470 GLN A 192 CG CD OE1 NE2 REMARK 470 GLU A 194 CG CD OE1 OE2 REMARK 470 LYS A 225 CG CD CE NZ REMARK 470 LYS A 226 CG CD CE NZ REMARK 470 LEU A 234 CG CD1 CD2 REMARK 470 GLU A 235 CG CD OE1 OE2 REMARK 470 SER A 236 OG REMARK 470 ASP A 244 CG OD1 OD2 REMARK 470 ASP A 246 CG OD1 OD2 REMARK 470 ARG A 256 CG CD NE CZ NH1 NH2 REMARK 470 ARG A 257 CG CD NE CZ NH1 NH2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 246 1.18 -152.04 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 304 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ATP A 306 O3G REMARK 620 2 ATP A 306 O1B 81.6 REMARK 620 3 ATP A 306 O1A 77.0 86.0 REMARK 620 4 HOH A 411 O 78.2 101.9 152.6 REMARK 620 5 HOH A 412 O 82.1 159.5 78.1 87.0 REMARK 620 6 HOH A 418 O 163.5 108.9 90.9 110.7 84.5 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 305 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ATP A 306 O1G REMARK 620 2 ATP A 306 O1G 103.4 REMARK 620 3 HOH A 403 O 75.5 85.8 REMARK 620 4 HOH A 403 O 86.3 75.8 150.4 REMARK 620 5 HOH A 425 O 71.9 167.6 103.6 92.3 REMARK 620 6 HOH A 425 O 166.7 71.8 91.6 104.0 115.3 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 302 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 303 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MG A 304 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MG A 305 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ATP A 306 DBREF 5U99 A 1 284 UNP P9WMN1 HIS1_MYCTU 1 284 SEQADV 5U99 GLY A -1 UNP P9WMN1 EXPRESSION TAG SEQADV 5U99 ALA A 0 UNP P9WMN1 EXPRESSION TAG SEQRES 1 A 286 GLY ALA MET LEU ARG VAL ALA VAL PRO ASN LYS GLY ALA SEQRES 2 A 286 LEU SER GLU PRO ALA THR GLU ILE LEU ALA GLU ALA GLY SEQRES 3 A 286 TYR ARG ARG ARG THR ASP SER LYS ASP LEU THR VAL ILE SEQRES 4 A 286 ASP PRO VAL ASN ASN VAL GLU PHE PHE PHE LEU ARG PRO SEQRES 5 A 286 LYS ASP ILE ALA ILE TYR VAL GLY SER GLY GLU LEU ASP SEQRES 6 A 286 PHE GLY ILE THR GLY ARG ASP LEU VAL CYS ASP SER GLY SEQRES 7 A 286 ALA GLN VAL ARG GLU ARG LEU ALA LEU GLY PHE GLY SER SEQRES 8 A 286 SER SER PHE ARG TYR ALA ALA PRO ALA GLY ARG ASN TRP SEQRES 9 A 286 THR THR ALA ASP LEU ALA GLY MET ARG ILE ALA THR ALA SEQRES 10 A 286 TYR PRO ASN LEU VAL ARG LYS ASP LEU ALA THR LYS GLY SEQRES 11 A 286 ILE GLU ALA THR VAL ILE ARG LEU ASP GLY ALA VAL GLU SEQRES 12 A 286 ILE SER VAL GLN LEU GLY VAL ALA ASP ALA ILE ALA ASP SEQRES 13 A 286 VAL VAL GLY SER GLY ARG THR LEU SER GLN HIS ASP LEU SEQRES 14 A 286 VAL ALA PHE GLY GLU PRO LEU CYS ASP SER GLU ALA VAL SEQRES 15 A 286 LEU ILE GLU ARG ALA GLY THR ASP GLY GLN ASP GLN THR SEQRES 16 A 286 GLU ALA ARG ASP GLN LEU VAL ALA ARG VAL GLN GLY VAL SEQRES 17 A 286 VAL PHE GLY GLN GLN TYR LEU MET LEU ASP TYR ASP CYS SEQRES 18 A 286 PRO ARG SER ALA LEU LYS LYS ALA THR ALA ILE THR PRO SEQRES 19 A 286 GLY LEU GLU SER PRO THR ILE ALA PRO LEU ALA ASP PRO SEQRES 20 A 286 ASP TRP VAL ALA ILE ARG ALA LEU VAL PRO ARG ARG ASP SEQRES 21 A 286 VAL ASN GLY ILE MET ASP GLU LEU ALA ALA ILE GLY ALA SEQRES 22 A 286 LYS ALA ILE LEU ALA SER ASP ILE ARG PHE CYS ARG PHE HET SO4 A 301 5 HET SO4 A 302 5 HET SO4 A 303 5 HET MG A 304 1 HET MG A 305 1 HET ATP A 306 31 HETNAM SO4 SULFATE ION HETNAM MG MAGNESIUM ION HETNAM ATP ADENOSINE-5'-TRIPHOSPHATE FORMUL 2 SO4 3(O4 S 2-) FORMUL 5 MG 2(MG 2+) FORMUL 7 ATP C10 H16 N5 O13 P3 FORMUL 8 HOH *28(H2 O) HELIX 1 AA1 LEU A 12 ALA A 23 1 12 HELIX 2 AA2 ARG A 49 SER A 59 1 11 HELIX 3 AA3 ARG A 69 GLY A 76 1 8 HELIX 4 AA4 THR A 103 ALA A 108 5 6 HELIX 5 AA5 TYR A 116 GLY A 128 1 13 HELIX 6 AA6 ALA A 139 SER A 143 5 5 HELIX 7 AA7 GLY A 159 HIS A 165 1 7 HELIX 8 AA8 THR A 193 GLN A 211 1 19 HELIX 9 AA9 ALA A 223 THR A 231 1 9 HELIX 10 AB1 ASP A 258 ILE A 269 1 12 SHEET 1 AA1 6 THR A 35 ASP A 38 0 SHEET 2 AA1 6 VAL A 43 LEU A 48 -1 O PHE A 45 N VAL A 36 SHEET 3 AA1 6 LEU A 2 PRO A 7 1 N LEU A 2 O GLU A 44 SHEET 4 AA1 6 PHE A 64 GLY A 68 1 O PHE A 64 N ALA A 5 SHEET 5 AA1 6 ALA A 179 ARG A 184 -1 O ILE A 182 N GLY A 65 SHEET 6 AA1 6 VAL A 79 ALA A 84 -1 N ARG A 80 O GLU A 183 SHEET 1 AA2 5 THR A 132 ARG A 135 0 SHEET 2 AA2 5 ARG A 111 THR A 114 1 N ILE A 112 O ILE A 134 SHEET 3 AA2 5 ALA A 151 VAL A 156 1 O ALA A 153 N ALA A 113 SHEET 4 AA2 5 SER A 90 PRO A 97 -1 N ALA A 95 O ILE A 152 SHEET 5 AA2 5 LEU A 167 SER A 177 -1 O VAL A 168 N ALA A 96 SHEET 1 AA3 4 THR A 238 ALA A 240 0 SHEET 2 AA3 4 TRP A 247 PRO A 255 -1 O ALA A 249 N ALA A 240 SHEET 3 AA3 4 TYR A 212 PRO A 220 -1 N TYR A 217 O ILE A 250 SHEET 4 AA3 4 LYS A 272 SER A 277 -1 O LYS A 272 N ASP A 218 LINK MG MG A 304 O3G ATP A 306 1555 1555 2.36 LINK MG MG A 304 O1B ATP A 306 1555 1555 1.96 LINK MG MG A 304 O1A ATP A 306 1555 1555 2.26 LINK MG MG A 304 O HOH A 411 1555 1555 1.92 LINK MG MG A 304 O HOH A 412 1555 1555 2.15 LINK MG MG A 304 O HOH A 418 1555 1555 2.39 LINK MG MG A 305 O1G ATP A 306 1555 1555 2.33 LINK MG MG A 305 O1G ATP A 306 1555 5554 2.33 LINK MG MG A 305 O HOH A 403 1555 1555 1.73 LINK MG MG A 305 O HOH A 403 1555 5554 1.71 LINK MG MG A 305 O HOH A 425 1555 1555 2.72 LINK MG MG A 305 O HOH A 425 1555 5554 2.73 SITE 1 AC1 8 GLY A 157 SER A 158 GLY A 159 ARG A 160 SITE 2 AC1 8 THR A 161 SO4 A 303 ATP A 306 HOH A 402 SITE 1 AC2 7 ASN A 8 LYS A 9 GLY A 138 ALA A 139 SITE 2 AC2 7 SO4 A 303 HOH A 411 HOH A 412 SITE 1 AC3 7 GLU A 141 ASP A 154 VAL A 155 THR A 161 SITE 2 AC3 7 SO4 A 301 SO4 A 302 ATP A 306 SITE 1 AC4 4 ATP A 306 HOH A 411 HOH A 412 HOH A 418 SITE 1 AC5 3 ATP A 306 HOH A 403 HOH A 425 SITE 1 AC6 21 LYS A 9 ARG A 49 GLY A 68 ASP A 70 SITE 2 AC6 21 GLY A 88 SER A 90 VAL A 155 SO4 A 301 SITE 3 AC6 21 SO4 A 303 MG A 304 MG A 305 HOH A 401 SITE 4 AC6 21 HOH A 403 HOH A 404 HOH A 411 HOH A 412 SITE 5 AC6 21 HOH A 413 HOH A 414 HOH A 418 HOH A 421 SITE 6 AC6 21 HOH A 425 CRYST1 134.758 134.758 111.005 90.00 90.00 120.00 H 3 2 18 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.007421 0.004284 0.000000 0.00000 SCALE2 0.000000 0.008569 0.000000 0.00000 SCALE3 0.000000 0.000000 0.009009 0.00000