HEADER DE NOVO PROTEIN 20-DEC-16 5UB0 TITLE SOLUTION NMR STRUCTURE OF NERD-C, A NATIVELY FOLDED TETRAMUTANT OF THE TITLE 2 B1 DOMAIN OF STREPTOCOCCAL PROTEIN G (GB1) COMPND MOL_ID: 1; COMPND 2 MOLECULE: IMMUNOGLOBULIN G-BINDING PROTEIN G; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: UNP RESIDUES 373-427; COMPND 5 SYNONYM: IGG-BINDING PROTEIN G; COMPND 6 ENGINEERED: YES; COMPND 7 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: STREPTOCOCCUS SP. GX7805; SOURCE 3 ORGANISM_TAXID: 1325; SOURCE 4 GENE: SPG; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21-GOLD(DE3); SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PJ414 KEYWDS DYNAMICS, COMPUTATIONAL DESIGN, CONFORMATIONAL EXCHANGE, KEYWDS 2 IMMUNOGLOBULIN-BINDING, DE NOVO PROTEIN EXPDTA SOLUTION NMR NUMMDL 10 AUTHOR A.M.DAMRY,J.A.DAVEY,N.K.GOTO,R.A.CHICA REVDAT 6 14-JUN-23 5UB0 1 REMARK REVDAT 5 08-JAN-20 5UB0 1 REMARK REVDAT 4 06-DEC-17 5UB0 1 JRNL REVDAT 3 08-NOV-17 5UB0 1 JRNL REVDAT 2 18-OCT-17 5UB0 1 JRNL REVDAT 1 23-AUG-17 5UB0 0 JRNL AUTH J.A.DAVEY,A.M.DAMRY,N.K.GOTO,R.A.CHICA JRNL TITL RATIONAL DESIGN OF PROTEINS THAT EXCHANGE ON FUNCTIONAL JRNL TITL 2 TIMESCALES. JRNL REF NAT. CHEM. BIOL. V. 13 1280 2017 JRNL REFN ESSN 1552-4469 JRNL PMID 29058725 JRNL DOI 10.1038/NCHEMBIO.2503 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CYANA REMARK 3 AUTHORS : GUNTERT, MUMENTHALER AND WUTHRICH REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5UB0 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 06-JAN-17. REMARK 100 THE DEPOSITION ID IS D_1000225440. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298 REMARK 210 PH : 7.4 REMARK 210 IONIC STRENGTH : 10 MM SODIUM PHOSPHATE REMARK 210 PRESSURE : 1 ATM REMARK 210 SAMPLE CONTENTS : 1.0 MM [U-98% 15N] PROTEIN REMARK 210 (GB1), 10 MM SODIUM PHOSPHATE, REMARK 210 90% H2O, 10% D2O; 1.0 MM [U-99% REMARK 210 13C; U-98% 15N] PROTEIN (GB1), REMARK 210 10 MM SODIUM PHOSPHATE, 90% H2O/ REMARK 210 10% D2O; 1.0 MM [U-99% 13C; U-98% REMARK 210 15N] PROTEIN (GB1), 10 MM REMARK 210 SODIUM PHOSPHATE, 100% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 3D 1H-15N NOESY; 3D 1H-13C NOESY REMARK 210 ALIPHATIC; 3D 1H-13C NOESY REMARK 210 AROMATIC; 3D HNCACB; 3D CBCA(CO) REMARK 210 NH; 3D HNCO; 3D CCH-TOCSY; 3D REMARK 210 HCCH-TOCSY; 3D HCCH-COSY; 2D 1H- REMARK 210 15N HSQC; 2D 1H-13C HSQC REMARK 210 SPECTROMETER FIELD STRENGTH : 500 MHZ REMARK 210 SPECTROMETER MODEL : INOVA REMARK 210 SPECTROMETER MANUFACTURER : VARIAN REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : CYANA, NMRVIEW, NMRPIPE, VNMR REMARK 210 METHOD USED : SIMULATED ANNEALING REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 100 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 10 REMARK 210 CONFORMERS, SELECTION CRITERIA : 10 STRUCTURES FOR LOWEST ENERGY REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 9 THR A 16 148.30 -174.87 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 30220 RELATED DB: BMRB REMARK 900 SOLUTION NMR STRUCTURE OF NERD-C, A NATIVELY FOLDED TETRAMUTANT OF REMARK 900 THE B1 DOMAIN OF STREPTOCOCCAL PROTEIN G (GB1) REMARK 900 RELATED ID: 5UBS RELATED DB: PDB REMARK 900 RELATED ID: 5UCE RELATED DB: PDB REMARK 900 RELATED ID: 5UCF RELATED DB: PDB DBREF 5UB0 A 2 56 UNP P19909 SPG2_STRSG 373 427 SEQADV 5UB0 MET A 1 UNP P19909 INITIATING METHIONINE SEQADV 5UB0 PHE A 3 UNP P19909 TYR 374 ENGINEERED MUTATION SEQADV 5UB0 ILE A 6 UNP P19909 VAL 377 ENGINEERED MUTATION SEQADV 5UB0 LEU A 30 UNP P19909 PHE 401 ENGINEERED MUTATION SEQADV 5UB0 ILE A 39 UNP P19909 VAL 410 ENGINEERED MUTATION SEQRES 1 A 56 MET THR PHE LYS LEU ILE ILE ASN GLY LYS THR LEU LYS SEQRES 2 A 56 GLY GLU THR THR THR GLU ALA VAL ASP ALA ALA THR ALA SEQRES 3 A 56 GLU LYS VAL LEU LYS GLN TYR ALA ASN ASP ASN GLY ILE SEQRES 4 A 56 ASP GLY GLU TRP THR TYR ASP ASP ALA THR LYS THR PHE SEQRES 5 A 56 THR VAL THR GLU HELIX 1 AA1 ASP A 22 ASP A 36 1 15 SHEET 1 AA1 4 GLY A 14 GLU A 19 0 SHEET 2 AA1 4 THR A 2 GLY A 9 -1 N LEU A 5 O THR A 16 SHEET 3 AA1 4 THR A 51 GLU A 56 1 O VAL A 54 N ILE A 6 SHEET 4 AA1 4 GLU A 42 TYR A 45 -1 N THR A 44 O THR A 53 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1