HEADER TRANSFERASE 20-DEC-16 5UB5 TITLE HUMAN POGLUT1 IN COMPLEX WITH HUMAN NOTCH1 EGF12 S458T MUTANT AND UDP COMPND MOL_ID: 1; COMPND 2 MOLECULE: PROTEIN O-GLUCOSYLTRANSFERASE 1; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: UNP RESIDUES 29-385; COMPND 5 SYNONYM: CAP10-LIKE 46 KDA PROTEIN,HCLP46,KTEL MOTIF-CONTAINING COMPND 6 PROTEIN 1,MYELODYSPLASTIC SYNDROMES RELATIVE PROTEIN,O- COMPND 7 GLUCOSYLTRANSFERASE RUMI HOMOLOG,HRUMI,PROTEIN O-XYLOSYLTRANSFERASE; COMPND 8 EC: 2.4.1.-,2.4.2.26; COMPND 9 ENGINEERED: YES; COMPND 10 MOL_ID: 2; COMPND 11 MOLECULE: NEUROGENIC LOCUS NOTCH HOMOLOG PROTEIN 1; COMPND 12 CHAIN: B; COMPND 13 FRAGMENT: UNP RESIDUES 452-491; COMPND 14 SYNONYM: HN1,TRANSLOCATION-ASSOCIATED NOTCH PROTEIN TAN-1; COMPND 15 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: POGLUT1, C3ORF9, CLP46, KTELC1, MDSRP, MDS010, UNQ490/PRO1006; SOURCE 6 EXPRESSION_SYSTEM: HOMO SAPIENS; SOURCE 7 EXPRESSION_SYSTEM_COMMON: HUMAN; SOURCE 8 EXPRESSION_SYSTEM_TAXID: 9606; SOURCE 9 EXPRESSION_SYSTEM_CELL_LINE: HEK293S GNTI-; SOURCE 10 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 11 EXPRESSION_SYSTEM_PLASMID: PB-T-PAF; SOURCE 12 MOL_ID: 2; SOURCE 13 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 14 ORGANISM_COMMON: HUMAN; SOURCE 15 ORGANISM_TAXID: 9606; SOURCE 16 GENE: NOTCH1, TAN1; SOURCE 17 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 18 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 19 EXPRESSION_SYSTEM_STRAIN: BL21 (DE3) KEYWDS TRANSFERASE, GLYCOSYLTRANSFERASE, GT-B GLUCOSYLTRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR Z.LI,J.M.RINI REVDAT 5 04-OCT-23 5UB5 1 HETSYN REVDAT 4 29-JUL-20 5UB5 1 COMPND REMARK HETNAM LINK REVDAT 4 2 1 SITE REVDAT 3 04-APR-18 5UB5 1 SOURCE REMARK REVDAT 2 30-AUG-17 5UB5 1 JRNL REVDAT 1 09-AUG-17 5UB5 0 JRNL AUTH Z.LI,M.FISCHER,M.SATKUNARAJAH,D.ZHOU,S.G.WITHERS,J.M.RINI JRNL TITL STRUCTURAL BASIS OF NOTCH O-GLUCOSYLATION AND O-XYLOSYLATION JRNL TITL 2 BY MAMMALIAN PROTEIN-O-GLUCOSYLTRANSFERASE 1 (POGLUT1). JRNL REF NAT COMMUN V. 8 185 2017 JRNL REFN ESSN 2041-1723 JRNL PMID 28775322 JRNL DOI 10.1038/S41467-017-00255-7 REMARK 2 REMARK 2 RESOLUTION. 2.09 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.11.1_2575 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.09 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 20.90 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.350 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.0 REMARK 3 NUMBER OF REFLECTIONS : 26479 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.155 REMARK 3 R VALUE (WORKING SET) : 0.153 REMARK 3 FREE R VALUE : 0.193 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.160 REMARK 3 FREE R VALUE TEST SET COUNT : 1365 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 20.8968 - 4.4866 0.99 2687 130 0.1461 0.1672 REMARK 3 2 4.4866 - 3.5669 1.00 2565 145 0.1269 0.1644 REMARK 3 3 3.5669 - 3.1177 1.00 2548 139 0.1413 0.1877 REMARK 3 4 3.1177 - 2.8334 1.00 2538 132 0.1587 0.1901 REMARK 3 5 2.8334 - 2.6307 1.00 2508 143 0.1504 0.2000 REMARK 3 6 2.6307 - 2.4759 1.00 2510 152 0.1553 0.2229 REMARK 3 7 2.4759 - 2.3521 1.00 2514 136 0.1544 0.1953 REMARK 3 8 2.3521 - 2.2498 1.00 2482 139 0.1641 0.2129 REMARK 3 9 2.2498 - 2.1633 1.00 2504 133 0.1934 0.2484 REMARK 3 10 2.1633 - 2.0887 0.90 2258 116 0.2369 0.2787 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.210 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 18.160 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 21.44 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 32.95 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.012 3483 REMARK 3 ANGLE : 1.235 4752 REMARK 3 CHIRALITY : 0.071 496 REMARK 3 PLANARITY : 0.010 609 REMARK 3 DIHEDRAL : 12.287 2072 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 9 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 30 THROUGH 68 ) REMARK 3 ORIGIN FOR THE GROUP (A): 4.0961 30.3977 34.9009 REMARK 3 T TENSOR REMARK 3 T11: 0.1910 T22: 0.4234 REMARK 3 T33: 0.1209 T12: -0.0253 REMARK 3 T13: 0.0603 T23: -0.0109 REMARK 3 L TENSOR REMARK 3 L11: 0.9881 L22: 0.7756 REMARK 3 L33: 0.0547 L12: -0.4957 REMARK 3 L13: 0.0379 L23: 0.0494 REMARK 3 S TENSOR REMARK 3 S11: -0.1598 S12: -0.1857 S13: 0.0435 REMARK 3 S21: 0.2514 S22: 0.0659 S23: 0.0150 REMARK 3 S31: 0.2015 S32: -0.5032 S33: -0.2184 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 69 THROUGH 104 ) REMARK 3 ORIGIN FOR THE GROUP (A): 32.2411 12.9245 31.9428 REMARK 3 T TENSOR REMARK 3 T11: 0.3353 T22: 0.3933 REMARK 3 T33: 0.2832 T12: 0.2080 REMARK 3 T13: -0.0159 T23: 0.0638 REMARK 3 L TENSOR REMARK 3 L11: 0.1880 L22: 0.0197 REMARK 3 L33: 0.2499 L12: -0.0092 REMARK 3 L13: -0.2068 L23: -0.0100 REMARK 3 S TENSOR REMARK 3 S11: -0.0749 S12: -0.3330 S13: -0.2480 REMARK 3 S21: 0.0912 S22: 0.0338 S23: -0.1472 REMARK 3 S31: 0.3284 S32: 0.3695 S33: 0.0028 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 105 THROUGH 139 ) REMARK 3 ORIGIN FOR THE GROUP (A): 27.8541 20.8123 28.9275 REMARK 3 T TENSOR REMARK 3 T11: 0.2353 T22: 0.2171 REMARK 3 T33: 0.1867 T12: 0.0637 REMARK 3 T13: -0.0209 T23: 0.0005 REMARK 3 L TENSOR REMARK 3 L11: 0.1284 L22: 0.7454 REMARK 3 L33: 0.5596 L12: -0.0240 REMARK 3 L13: -0.0093 L23: 0.2975 REMARK 3 S TENSOR REMARK 3 S11: -0.0572 S12: -0.1373 S13: -0.1560 REMARK 3 S21: 0.1224 S22: 0.1213 S23: -0.1970 REMARK 3 S31: 0.3198 S32: 0.3852 S33: 0.0385 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 140 THROUGH 197 ) REMARK 3 ORIGIN FOR THE GROUP (A): 19.8340 26.1078 21.8291 REMARK 3 T TENSOR REMARK 3 T11: 0.1469 T22: 0.0761 REMARK 3 T33: 0.1487 T12: 0.0198 REMARK 3 T13: 0.0105 T23: 0.0023 REMARK 3 L TENSOR REMARK 3 L11: 0.6668 L22: 0.4038 REMARK 3 L33: 0.5222 L12: -0.3536 REMARK 3 L13: 0.0831 L23: 0.3075 REMARK 3 S TENSOR REMARK 3 S11: 0.0207 S12: -0.0441 S13: -0.0059 REMARK 3 S21: 0.0426 S22: 0.0334 S23: -0.0214 REMARK 3 S31: 0.0779 S32: 0.1076 S33: 0.1906 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 198 THROUGH 248 ) REMARK 3 ORIGIN FOR THE GROUP (A): 5.5477 27.1114 6.2448 REMARK 3 T TENSOR REMARK 3 T11: 0.1207 T22: 0.1948 REMARK 3 T33: 0.1305 T12: -0.0063 REMARK 3 T13: -0.0093 T23: -0.0456 REMARK 3 L TENSOR REMARK 3 L11: 0.7106 L22: 0.1103 REMARK 3 L33: 0.8080 L12: 0.0271 REMARK 3 L13: -0.1584 L23: 0.0756 REMARK 3 S TENSOR REMARK 3 S11: 0.0550 S12: 0.3539 S13: -0.0685 REMARK 3 S21: -0.0284 S22: -0.0338 S23: 0.0416 REMARK 3 S31: 0.0996 S32: -0.3462 S33: 0.0817 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 249 THROUGH 349 ) REMARK 3 ORIGIN FOR THE GROUP (A): 4.8781 31.5323 18.8246 REMARK 3 T TENSOR REMARK 3 T11: 0.0922 T22: 0.1281 REMARK 3 T33: 0.1069 T12: -0.0105 REMARK 3 T13: 0.0038 T23: -0.0068 REMARK 3 L TENSOR REMARK 3 L11: 0.7324 L22: 0.3367 REMARK 3 L33: 0.8549 L12: -0.1490 REMARK 3 L13: -0.1960 L23: -0.0691 REMARK 3 S TENSOR REMARK 3 S11: -0.0151 S12: 0.0087 S13: 0.0713 REMARK 3 S21: 0.0128 S22: 0.0007 S23: 0.0673 REMARK 3 S31: 0.0168 S32: -0.3123 S33: 0.0063 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 350 THROUGH 385 ) REMARK 3 ORIGIN FOR THE GROUP (A): 30.0849 22.9031 35.4433 REMARK 3 T TENSOR REMARK 3 T11: 0.2195 T22: 0.3379 REMARK 3 T33: 0.1767 T12: 0.1379 REMARK 3 T13: -0.0144 T23: 0.0159 REMARK 3 L TENSOR REMARK 3 L11: 0.5383 L22: 0.3539 REMARK 3 L33: 0.8362 L12: -0.3537 REMARK 3 L13: 0.2733 L23: -0.3474 REMARK 3 S TENSOR REMARK 3 S11: -0.1570 S12: -0.4443 S13: 0.0781 REMARK 3 S21: 0.1491 S22: 0.1780 S23: -0.3203 REMARK 3 S31: 0.1153 S32: 0.4894 S33: 0.1390 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 452 THROUGH 477 ) REMARK 3 ORIGIN FOR THE GROUP (A): 26.2218 15.5507 8.1296 REMARK 3 T TENSOR REMARK 3 T11: 0.3471 T22: 0.1542 REMARK 3 T33: 0.2688 T12: 0.0832 REMARK 3 T13: 0.0457 T23: -0.0878 REMARK 3 L TENSOR REMARK 3 L11: 0.2486 L22: 0.0822 REMARK 3 L33: 0.1809 L12: -0.1441 REMARK 3 L13: 0.2073 L23: -0.1157 REMARK 3 S TENSOR REMARK 3 S11: -0.0098 S12: 0.1402 S13: -0.2956 REMARK 3 S21: -0.0033 S22: -0.0806 S23: 0.0434 REMARK 3 S31: 0.4342 S32: 0.1862 S33: -0.0860 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 478 THROUGH 491 ) REMARK 3 ORIGIN FOR THE GROUP (A): 36.2665 24.4929 5.5307 REMARK 3 T TENSOR REMARK 3 T11: 0.3110 T22: 0.3550 REMARK 3 T33: 0.3030 T12: -0.0486 REMARK 3 T13: 0.0905 T23: -0.0821 REMARK 3 L TENSOR REMARK 3 L11: 0.1014 L22: 0.0559 REMARK 3 L33: 0.1684 L12: -0.0737 REMARK 3 L13: 0.1289 L23: -0.0956 REMARK 3 S TENSOR REMARK 3 S11: 0.1719 S12: 0.1514 S13: 0.0471 REMARK 3 S21: -0.1454 S22: 0.3893 S23: -0.2828 REMARK 3 S31: 0.0496 S32: 0.1043 S33: 0.0328 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5UB5 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 06-JAN-17. REMARK 100 THE DEPOSITION ID IS D_1000225544. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 01-NOV-16 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : BRUKER TURBO X-RAY SOURCE REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.5418 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : BRUKER PHOTON 100 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : SAINT REMARK 200 DATA SCALING SOFTWARE : SAINT REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 26486 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.089 REMARK 200 RESOLUTION RANGE LOW (A) : 20.900 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.0 REMARK 200 DATA REDUNDANCY : 11.00 REMARK 200 R MERGE (I) : 0.09068 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 18.7400 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.09 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.16 REMARK 200 COMPLETENESS FOR SHELL (%) : 91.5 REMARK 200 DATA REDUNDANCY IN SHELL : 5.30 REMARK 200 R MERGE FOR SHELL (I) : 0.54860 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 3.160 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 5L0R REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 47.79 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.36 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 20% (V/V) PEG5000 MME, 50 MM MES PH REMARK 280 6.5, 2MM CACL2, 250MM NACL, 5% (V/V) 2-METHYL-2,4-PENTANEDIOL, REMARK 280 VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 295K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 35.47550 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 41.79150 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 37.03600 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 41.79150 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 35.47550 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 37.03600 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2870 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 18150 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -9.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 29 REMARK 465 GLY B 450 REMARK 465 SER B 451 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 SER A 30 N CA CB OG REMARK 470 LYS A 243 CG CD CE NZ REMARK 470 GLU A 323 CG CD OE1 OE2 REMARK 470 LYS A 378 CG CD CE NZ REMARK 470 ILE B 471 CG1 CG2 CD1 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 617 O HOH A 760 2.09 REMARK 500 O HOH A 755 O HOH A 783 2.16 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ARG A 183 69.08 39.12 REMARK 500 ALA A 275 -141.58 -128.89 REMARK 500 ASP A 295 26.07 -142.51 REMARK 500 TRP A 308 -20.17 73.44 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA B1001 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP B 452 OD1 REMARK 620 2 ASP B 452 OD2 43.1 REMARK 620 3 VAL B 453 O 90.6 75.8 REMARK 620 4 GLU B 455 OE1 135.9 145.8 69.9 REMARK 620 5 ASP B 469 OD1 122.5 83.1 94.3 98.9 REMARK 620 6 GLN B 470 O 68.8 78.1 153.9 136.1 84.2 REMARK 620 7 GLU B 473 O 118.9 142.5 141.6 71.7 89.8 64.5 REMARK 620 8 HOH B1103 O 66.0 105.3 86.4 73.4 171.5 98.9 84.5 REMARK 620 N 1 2 3 4 5 6 7 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 5L0R RELATED DB: PDB REMARK 900 RELATED ID: 5L0S RELATED DB: PDB REMARK 900 RELATED ID: 5L0T RELATED DB: PDB REMARK 900 RELATED ID: 5L0U RELATED DB: PDB REMARK 900 RELATED ID: 5L0V RELATED DB: PDB DBREF 5UB5 A 29 385 UNP Q8NBL1 PGLT1_HUMAN 29 385 DBREF 5UB5 B 452 491 UNP P46531 NOTC1_HUMAN 452 491 SEQADV 5UB5 GLY B 450 UNP P46531 EXPRESSION TAG SEQADV 5UB5 SER B 451 UNP P46531 EXPRESSION TAG SEQADV 5UB5 THR B 458 UNP P46531 SER 458 ENGINEERED MUTATION SEQRES 1 A 357 GLY SER LYS TRP LYS VAL PHE ILE ASP GLN ILE ASN ARG SEQRES 2 A 357 SER LEU GLU ASN TYR GLU PRO CYS SER SER GLN ASN CYS SEQRES 3 A 357 SER CYS TYR HIS GLY VAL ILE GLU GLU ASP LEU THR PRO SEQRES 4 A 357 PHE ARG GLY GLY ILE SER ARG LYS MET MET ALA GLU VAL SEQRES 5 A 357 VAL ARG ARG LYS LEU GLY THR HIS TYR GLN ILE THR LYS SEQRES 6 A 357 ASN ARG LEU TYR ARG GLU ASN ASP CYS MET PHE PRO SER SEQRES 7 A 357 ARG CYS SER GLY VAL GLU HIS PHE ILE LEU GLU VAL ILE SEQRES 8 A 357 GLY ARG LEU PRO ASP MET GLU MET VAL ILE ASN VAL ARG SEQRES 9 A 357 ASP TYR PRO GLN VAL PRO LYS TRP MET GLU PRO ALA ILE SEQRES 10 A 357 PRO VAL PHE SER PHE SER LYS THR SER GLU TYR HIS ASP SEQRES 11 A 357 ILE MET TYR PRO ALA TRP THR PHE TRP GLU GLY GLY PRO SEQRES 12 A 357 ALA VAL TRP PRO ILE TYR PRO THR GLY LEU GLY ARG TRP SEQRES 13 A 357 ASP LEU PHE ARG GLU ASP LEU VAL ARG SER ALA ALA GLN SEQRES 14 A 357 TRP PRO TRP LYS LYS LYS ASN SER THR ALA TYR PHE ARG SEQRES 15 A 357 GLY SER ARG THR SER PRO GLU ARG ASP PRO LEU ILE LEU SEQRES 16 A 357 LEU SER ARG LYS ASN PRO LYS LEU VAL ASP ALA GLU TYR SEQRES 17 A 357 THR LYS ASN GLN ALA TRP LYS SER MET LYS ASP THR LEU SEQRES 18 A 357 GLY LYS PRO ALA ALA LYS ASP VAL HIS LEU VAL ASP HIS SEQRES 19 A 357 CYS LYS TYR LYS TYR LEU PHE ASN PHE ARG GLY VAL ALA SEQRES 20 A 357 ALA SER PHE ARG PHE LYS HIS LEU PHE LEU CYS GLY SER SEQRES 21 A 357 LEU VAL PHE HIS VAL GLY ASP GLU TRP LEU GLU PHE PHE SEQRES 22 A 357 TYR PRO GLN LEU LYS PRO TRP VAL HIS TYR ILE PRO VAL SEQRES 23 A 357 LYS THR ASP LEU SER ASN VAL GLN GLU LEU LEU GLN PHE SEQRES 24 A 357 VAL LYS ALA ASN ASP ASP VAL ALA GLN GLU ILE ALA GLU SEQRES 25 A 357 ARG GLY SER GLN PHE ILE ARG ASN HIS LEU GLN MET ASP SEQRES 26 A 357 ASP ILE THR CYS TYR TRP GLU ASN LEU LEU SER GLU TYR SEQRES 27 A 357 SER LYS PHE LEU SER TYR ASN VAL THR ARG ARG LYS GLY SEQRES 28 A 357 TYR ASP GLN ILE ILE PRO SEQRES 1 B 42 GLY SER ASP VAL ASN GLU CYS VAL THR ASN PRO CYS GLN SEQRES 2 B 42 ASN ASP ALA THR CYS LEU ASP GLN ILE GLY GLU PHE GLN SEQRES 3 B 42 CYS ILE CYS MET PRO GLY TYR GLU GLY VAL HIS CYS GLU SEQRES 4 B 42 VAL ASN THR HET NAG A 401 28 HET NAG A 402 28 HET NAG A 403 28 HET UDP A 404 36 HET CA B1001 1 HETNAM NAG 2-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE HETNAM UDP URIDINE-5'-DIPHOSPHATE HETNAM CA CALCIUM ION HETSYN NAG N-ACETYL-BETA-D-GLUCOSAMINE; 2-ACETAMIDO-2-DEOXY-BETA- HETSYN 2 NAG D-GLUCOSE; 2-ACETAMIDO-2-DEOXY-D-GLUCOSE; 2-ACETAMIDO- HETSYN 3 NAG 2-DEOXY-GLUCOSE; N-ACETYL-D-GLUCOSAMINE FORMUL 3 NAG 3(C8 H15 N O6) FORMUL 6 UDP C9 H14 N2 O12 P2 FORMUL 7 CA CA 2+ FORMUL 8 HOH *337(H2 O) HELIX 1 AA1 TRP A 32 TYR A 46 1 15 HELIX 2 AA2 ASN A 53 CYS A 56 5 4 HELIX 3 AA3 TYR A 57 THR A 66 1 10 HELIX 4 AA4 PRO A 67 ARG A 69 5 3 HELIX 5 AA5 SER A 73 ARG A 83 1 11 HELIX 6 AA6 PHE A 104 ILE A 119 1 16 HELIX 7 AA7 GLY A 120 LEU A 122 5 3 HELIX 8 AA8 ALA A 163 TRP A 167 5 5 HELIX 9 AA9 ARG A 183 TRP A 198 1 16 HELIX 10 AB1 PRO A 199 LYS A 203 5 5 HELIX 11 AB2 SER A 215 GLU A 217 5 3 HELIX 12 AB3 ARG A 218 ASN A 228 1 11 HELIX 13 AB4 SER A 244 LEU A 249 5 6 HELIX 14 AB5 HIS A 258 CYS A 263 5 6 HELIX 15 AB6 PHE A 278 CYS A 286 1 9 HELIX 16 AB7 PHE A 301 LEU A 305 5 5 HELIX 17 AB8 ASN A 320 ASN A 331 1 12 HELIX 18 AB9 ASN A 331 LEU A 350 1 20 HELIX 19 AC1 GLN A 351 LYS A 368 1 18 HELIX 20 AC2 ASN B 454 ASN B 459 5 6 SHEET 1 AA1 4 MET A 125 ILE A 129 0 SHEET 2 AA1 4 THR A 87 THR A 92 -1 N ILE A 91 O MET A 125 SHEET 3 AA1 4 ARG A 95 ARG A 98 -1 O TYR A 97 N GLN A 90 SHEET 4 AA1 4 ASP A 381 ILE A 383 -1 O ILE A 383 N LEU A 96 SHEET 1 AA2 2 PHE A 148 SER A 149 0 SHEET 2 AA2 2 ILE A 159 MET A 160 1 O ILE A 159 N SER A 149 SHEET 1 AA3 2 ALA A 207 GLY A 211 0 SHEET 2 AA3 2 VAL A 232 TYR A 236 1 O ASP A 233 N ALA A 207 SHEET 1 AA4 3 TYR A 267 ASN A 270 0 SHEET 2 AA4 3 LEU A 289 VAL A 293 1 O VAL A 293 N ASN A 270 SHEET 3 AA4 3 ILE A 312 VAL A 314 1 O ILE A 312 N VAL A 290 SHEET 1 AA5 2 THR B 466 GLN B 470 0 SHEET 2 AA5 2 GLU B 473 ILE B 477 -1 O GLN B 475 N LEU B 468 SHEET 1 AA6 2 TYR B 482 GLU B 483 0 SHEET 2 AA6 2 VAL B 489 ASN B 490 -1 O VAL B 489 N GLU B 483 SSBOND 1 CYS A 49 CYS A 56 1555 1555 2.02 SSBOND 2 CYS A 54 CYS A 357 1555 1555 2.15 SSBOND 3 CYS A 102 CYS A 108 1555 1555 2.09 SSBOND 4 CYS A 263 CYS A 286 1555 1555 2.18 SSBOND 5 CYS B 456 CYS B 467 1555 1555 2.11 SSBOND 6 CYS B 461 CYS B 476 1555 1555 2.05 SSBOND 7 CYS B 478 CYS B 487 1555 1555 2.07 LINK ND2 ASN A 53 C1 NAG A 401 1555 1555 1.44 LINK ND2 ASN A 204 C1 NAG A 402 1555 1555 1.43 LINK ND2 ASN A 373 C1 NAG A 403 1555 1555 1.43 LINK OD1 ASP B 452 CA CA B1001 1555 1555 3.19 LINK OD2 ASP B 452 CA CA B1001 1555 1555 2.61 LINK O VAL B 453 CA CA B1001 1555 1555 2.52 LINK OE1 GLU B 455 CA CA B1001 1555 1555 2.47 LINK OD1 ASP B 469 CA CA B1001 1555 1555 2.28 LINK O GLN B 470 CA CA B1001 1555 1555 2.52 LINK O GLU B 473 CA CA B1001 1555 1555 2.87 LINK CA CA B1001 O HOH B1103 1555 1555 2.15 CISPEP 1 GLU A 142 PRO A 143 0 -6.25 CISPEP 2 TRP A 174 PRO A 175 0 2.39 CISPEP 3 ILE A 384 PRO A 385 0 6.29 CRYST1 70.951 74.072 83.583 90.00 90.00 90.00 P 21 21 21 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.014094 0.000000 0.000000 0.00000 SCALE2 0.000000 0.013500 0.000000 0.00000 SCALE3 0.000000 0.000000 0.011964 0.00000