HEADER PROTEIN BINDING 20-DEC-16 5UB8 TITLE CRYSTAL STRUCTURE OF YPT31, A RAB FAMILY GTPASE FROM CANDIDA ALBICANS, TITLE 2 IN COMPLEX WITH GDP AND ZN(II) COMPND MOL_ID: 1; COMPND 2 MOLECULE: LIKELY RAB FAMILY GTP-BINDING PROTEIN; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: CANDIDA ALBICANS (STRAIN SC5314 / ATCC MYA- SOURCE 3 2876); SOURCE 4 ORGANISM_COMMON: YEAST; SOURCE 5 ORGANISM_TAXID: 237561; SOURCE 6 STRAIN: SC5314 / ATCC MYA-2876; SOURCE 7 GENE: YPT31, CAO19.10153, CAO19.2622, ORF19.2622; SOURCE 8 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 9 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 10 EXPRESSION_SYSTEM_STRAIN: BL21(DE3)GOLD; SOURCE 11 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 12 EXPRESSION_SYSTEM_PLASMID: PMCSG68SBPTEV KEYWDS G-PROTEIN, RAB, GDP, P-LOOP, GTPASE, STRUCTURAL GENOMICS, CENTER FOR KEYWDS 2 STRUCTURAL GENOMICS OF INFECTIOUS DISEASES, CSGID, PROTEIN BINDING EXPDTA X-RAY DIFFRACTION AUTHOR P.J.STOGIOS,T.SKARINA,R.DI LEO,A.SAVCHENKO,W.F.ANDERSON,CENTER FOR AUTHOR 2 STRUCTURAL GENOMICS OF INFECTIOUS DISEASES (CSGID) REVDAT 4 04-OCT-23 5UB8 1 LINK REVDAT 3 11-DEC-19 5UB8 1 REMARK REVDAT 2 20-SEP-17 5UB8 1 REMARK REVDAT 1 11-JAN-17 5UB8 0 JRNL AUTH P.J.STOGIOS JRNL TITL CRYSTAL STRUCTURE OF YPT31, A RAB FAMILY GTPASE FROM CANDIDA JRNL TITL 2 ALBICANS, IN COMPLEX WITH GDP AND ZN(II) JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.35 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (DEV_2481: ???) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.35 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 29.57 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 92.4 REMARK 3 NUMBER OF REFLECTIONS : 8343 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.189 REMARK 3 R VALUE (WORKING SET) : 0.185 REMARK 3 FREE R VALUE : 0.226 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 10.020 REMARK 3 FREE R VALUE TEST SET COUNT : 836 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 29.5740 - 4.2592 0.99 1377 154 0.1516 0.1670 REMARK 3 2 4.2592 - 3.3822 0.98 1330 147 0.1579 0.2006 REMARK 3 3 3.3822 - 2.9551 0.95 1292 136 0.1938 0.2532 REMARK 3 4 2.9551 - 2.6851 0.92 1231 144 0.2293 0.2954 REMARK 3 5 2.6851 - 2.4928 0.87 1165 130 0.2366 0.2914 REMARK 3 6 2.4928 - 2.3459 0.83 1112 125 0.2533 0.2671 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.220 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 20.900 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.002 1466 REMARK 3 ANGLE : 0.586 1985 REMARK 3 CHIRALITY : 0.043 219 REMARK 3 PLANARITY : 0.002 248 REMARK 3 DIHEDRAL : 22.810 539 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 6 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: (CHAIN A AND RESID 8:42) REMARK 3 ORIGIN FOR THE GROUP (A): 49.5768 29.9336 10.5986 REMARK 3 T TENSOR REMARK 3 T11: 0.2313 T22: 0.2437 REMARK 3 T33: 0.2684 T12: 0.0840 REMARK 3 T13: 0.0022 T23: 0.0306 REMARK 3 L TENSOR REMARK 3 L11: 3.8373 L22: 2.4754 REMARK 3 L33: 2.7328 L12: 2.5205 REMARK 3 L13: 1.4054 L23: 0.4014 REMARK 3 S TENSOR REMARK 3 S11: -0.0265 S12: 0.1571 S13: -0.3756 REMARK 3 S21: -0.0894 S22: 0.2280 S23: -0.3367 REMARK 3 S31: 0.2001 S32: 0.5708 S33: -0.1933 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: (CHAIN A AND RESID 43:92) REMARK 3 ORIGIN FOR THE GROUP (A): 45.9738 28.0213 16.4269 REMARK 3 T TENSOR REMARK 3 T11: 0.1811 T22: 0.2177 REMARK 3 T33: 0.1851 T12: 0.0337 REMARK 3 T13: -0.0482 T23: 0.0091 REMARK 3 L TENSOR REMARK 3 L11: 6.7412 L22: 4.8528 REMARK 3 L33: 2.5661 L12: 3.7068 REMARK 3 L13: -0.9292 L23: -0.3154 REMARK 3 S TENSOR REMARK 3 S11: 0.0845 S12: -0.1268 S13: -0.4621 REMARK 3 S21: 0.0171 S22: -0.0206 S23: -0.4498 REMARK 3 S31: 0.1324 S32: 0.4134 S33: -0.0600 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: (CHAIN A AND RESID 93:116) REMARK 3 ORIGIN FOR THE GROUP (A): 30.7427 32.9924 14.6115 REMARK 3 T TENSOR REMARK 3 T11: 0.2117 T22: 0.1364 REMARK 3 T33: 0.2058 T12: -0.0477 REMARK 3 T13: 0.0510 T23: 0.0131 REMARK 3 L TENSOR REMARK 3 L11: 3.2765 L22: 1.3230 REMARK 3 L33: 5.2470 L12: -1.9640 REMARK 3 L13: 2.4793 L23: -1.0605 REMARK 3 S TENSOR REMARK 3 S11: -0.0915 S12: -0.0173 S13: -0.2317 REMARK 3 S21: 0.1370 S22: -0.0541 S23: 0.0308 REMARK 3 S31: 0.1045 S32: -0.1704 S33: 0.1131 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: (CHAIN A AND RESID 117:133) REMARK 3 ORIGIN FOR THE GROUP (A): 38.1681 35.6495 10.0733 REMARK 3 T TENSOR REMARK 3 T11: 0.1207 T22: 0.1021 REMARK 3 T33: 0.2341 T12: 0.0405 REMARK 3 T13: -0.0028 T23: 0.0617 REMARK 3 L TENSOR REMARK 3 L11: 2.6896 L22: 7.8043 REMARK 3 L33: 5.9148 L12: -0.2406 REMARK 3 L13: -3.6723 L23: 3.0706 REMARK 3 S TENSOR REMARK 3 S11: 0.1563 S12: 0.1292 S13: 0.3135 REMARK 3 S21: -0.1117 S22: 0.2233 S23: -0.3736 REMARK 3 S31: -0.3507 S32: 0.5504 S33: -0.2211 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: (CHAIN A AND RESID 134:181) REMARK 3 ORIGIN FOR THE GROUP (A): 39.8828 39.8311 6.7058 REMARK 3 T TENSOR REMARK 3 T11: 0.1534 T22: 0.2063 REMARK 3 T33: 0.1536 T12: -0.0053 REMARK 3 T13: 0.0480 T23: 0.0537 REMARK 3 L TENSOR REMARK 3 L11: 2.2046 L22: 2.2377 REMARK 3 L33: 2.5177 L12: 0.1905 REMARK 3 L13: 1.3927 L23: 0.3032 REMARK 3 S TENSOR REMARK 3 S11: -0.0061 S12: 0.1275 S13: 0.1969 REMARK 3 S21: -0.0498 S22: -0.0655 S23: -0.2646 REMARK 3 S31: -0.1061 S32: 0.4861 S33: 0.0554 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: (CHAIN A AND RESID 182:186) REMARK 3 ORIGIN FOR THE GROUP (A): 52.5623 51.8994 23.6092 REMARK 3 T TENSOR REMARK 3 T11: 1.2845 T22: 0.6055 REMARK 3 T33: 0.5963 T12: 0.1760 REMARK 3 T13: 0.0434 T23: -0.1008 REMARK 3 L TENSOR REMARK 3 L11: 4.7051 L22: 5.2309 REMARK 3 L33: 2.0325 L12: 4.9584 REMARK 3 L13: -1.3671 L23: -1.5132 REMARK 3 S TENSOR REMARK 3 S11: -0.5222 S12: -1.3091 S13: 0.1013 REMARK 3 S21: 1.4074 S22: -0.4535 S23: 0.3302 REMARK 3 S31: 2.2361 S32: 0.6135 S33: 0.9844 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5UB8 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 21-DEC-16. REMARK 100 THE DEPOSITION ID IS D_1000225586. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 21-NOV-16 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : RIGAKU MICROMAX-007 HF REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.5418 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : RIGAKU RAXIS IV++ REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-3000 REMARK 200 DATA SCALING SOFTWARE : HKL-3000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 8864 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.350 REMARK 200 RESOLUTION RANGE LOW (A) : 30.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.7 REMARK 200 DATA REDUNDANCY : 4.100 REMARK 200 R MERGE (I) : 0.16500 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 13.1300 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.35 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.39 REMARK 200 COMPLETENESS FOR SHELL (%) : 98.0 REMARK 200 DATA REDUNDANCY IN SHELL : 4.10 REMARK 200 R MERGE FOR SHELL (I) : 0.78600 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.560 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHENIX REMARK 200 STARTING MODEL: 3CPJ REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 42.37 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.13 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 15% (W/V) PEG3350, 25 MM ZINC ACETATE, REMARK 280 PH 7, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 59.15150 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 21.69600 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 59.15150 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 21.69600 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 4050 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 17110 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -150.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 118.99375 REMARK 350 BIOMT2 2 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 41.65627 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 450 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 ALA A 2 REMARK 465 ASP A 3 REMARK 465 ASN A 4 REMARK 465 SER A 5 REMARK 465 ASP A 6 REMARK 465 ASP A 7 REMARK 465 SER A 44 REMARK 465 ARG A 45 REMARK 465 SER A 46 REMARK 465 THR A 47 REMARK 465 ILE A 48 REMARK 465 ASN A 187 REMARK 465 ASN A 188 REMARK 465 ASP A 189 REMARK 465 SER A 190 REMARK 465 LYS A 191 REMARK 465 GLN A 192 REMARK 465 THR A 193 REMARK 465 ASN A 194 REMARK 465 THR A 195 REMARK 465 ALA A 196 REMARK 465 GLY A 197 REMARK 465 GLY A 198 REMARK 465 PRO A 199 REMARK 465 THR A 200 REMARK 465 ILE A 201 REMARK 465 SER A 202 REMARK 465 LEU A 203 REMARK 465 THR A 204 REMARK 465 PRO A 205 REMARK 465 ALA A 206 REMARK 465 PRO A 207 REMARK 465 GLN A 208 REMARK 465 GLU A 209 REMARK 465 LYS A 210 REMARK 465 LYS A 211 REMARK 465 ASN A 212 REMARK 465 LYS A 213 REMARK 465 ASN A 214 REMARK 465 ASN A 215 REMARK 465 GLY A 216 REMARK 465 UNK A 217 REMARK 465 LEU A 218 REMARK 465 LEU A 219 REMARK 465 LEU A 220 REMARK 465 ARG A 221 REMARK 465 HIS A 222 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LEU A 185 40.15 -86.70 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 302 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 SER A 29 OG REMARK 620 2 GDP A 301 O3B 86.3 REMARK 620 3 HOH A 407 O 87.3 91.4 REMARK 620 4 HOH A 411 O 79.6 165.9 87.9 REMARK 620 5 HOH A 412 O 178.1 95.6 92.8 98.5 REMARK 620 6 HOH A 417 O 87.3 88.1 174.5 91.3 92.7 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 303 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 112 OE1 REMARK 620 2 HIS A 116 NE2 96.1 REMARK 620 3 GLU A 149 OE2 58.7 96.1 REMARK 620 4 HOH A 502 O 110.9 112.9 57.0 REMARK 620 N 1 2 3 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GDP A 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN A 302 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN A 303 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: IDP95570 RELATED DB: TARGETTRACK DBREF 5UB8 A 1 222 UNP Q59KX4 Q59KX4_CANAL 1 222 SEQADV 5UB8 UNK A 217 UNP Q59KX4 TRP 217 CONFLICT SEQRES 1 A 222 MET ALA ASP ASN SER ASP ASP TYR SER TYR ASP TYR GLU SEQRES 2 A 222 TYR LEU TYR LYS ILE VAL LEU ILE GLY ASP SER GLY VAL SEQRES 3 A 222 GLY LYS SER ASN LEU LEU SER ARG PHE THR ARG ASP GLU SEQRES 4 A 222 PHE ASN LEU GLU SER ARG SER THR ILE GLY VAL GLU PHE SEQRES 5 A 222 ALA THR ARG THR LEU GLU ILE ASP GLY LYS ARG VAL LYS SEQRES 6 A 222 ALA GLN ILE TRP ASP THR ALA GLY GLN GLU ARG TYR ARG SEQRES 7 A 222 ALA ILE THR SER ALA TYR TYR ARG GLY ALA VAL GLY ALA SEQRES 8 A 222 LEU ILE VAL TYR ASP ILE ALA LYS THR GLU SER TYR GLU SEQRES 9 A 222 SER VAL SER ARG TRP LEU LYS GLU LEU LYS GLU HIS ALA SEQRES 10 A 222 ASP ALA ASN ILE ILE ILE GLU LEU VAL GLY ASN LYS SER SEQRES 11 A 222 ASP LEU ASP HIS LEU ARG ALA VAL PRO THR GLU GLU ALA SEQRES 12 A 222 LYS ASN PHE ALA MET GLU ASN ASN LEU LEU PHE THR GLU SEQRES 13 A 222 ALA SER ALA LEU SER SER ASP ASN VAL ASP LEU SER PHE SEQRES 14 A 222 HIS GLN LEU LEU LYS ASN ILE TYR GLU MET ILE SER LYS SEQRES 15 A 222 HIS GLN LEU GLU ASN ASN ASP SER LYS GLN THR ASN THR SEQRES 16 A 222 ALA GLY GLY PRO THR ILE SER LEU THR PRO ALA PRO GLN SEQRES 17 A 222 GLU LYS LYS ASN LYS ASN ASN GLY UNK LEU LEU LEU ARG SEQRES 18 A 222 HIS HET GDP A 301 28 HET ZN A 302 1 HET ZN A 303 1 HETNAM GDP GUANOSINE-5'-DIPHOSPHATE HETNAM ZN ZINC ION FORMUL 2 GDP C10 H15 N5 O11 P2 FORMUL 3 ZN 2(ZN 2+) FORMUL 5 HOH *127(H2 O) HELIX 1 AA1 GLY A 27 ARG A 37 1 11 HELIX 2 AA2 GLY A 73 TYR A 77 5 5 HELIX 3 AA3 THR A 81 ARG A 86 1 6 HELIX 4 AA4 LYS A 99 SER A 105 1 7 HELIX 5 AA5 SER A 105 ALA A 117 1 13 HELIX 6 AA6 LEU A 132 ARG A 136 5 5 HELIX 7 AA7 PRO A 139 ASN A 150 1 12 HELIX 8 AA8 ASN A 164 LEU A 185 1 22 SHEET 1 AA1 6 PHE A 52 ILE A 59 0 SHEET 2 AA1 6 LYS A 62 TRP A 69 -1 O LYS A 62 N ILE A 59 SHEET 3 AA1 6 GLU A 13 GLY A 22 1 N TYR A 14 O LYS A 65 SHEET 4 AA1 6 GLY A 90 ASP A 96 1 O VAL A 94 N ILE A 21 SHEET 5 AA1 6 ILE A 122 ASN A 128 1 O VAL A 126 N ILE A 93 SHEET 6 AA1 6 LEU A 153 GLU A 156 1 O LEU A 153 N LEU A 125 LINK OG SER A 29 ZN ZN A 302 1555 1555 2.16 LINK OE1 GLU A 112 ZN ZN A 303 1555 1555 2.22 LINK NE2 HIS A 116 ZN ZN A 303 1555 1555 2.18 LINK OE2 GLU A 149 ZN ZN A 303 1555 4556 2.02 LINK O3B GDP A 301 ZN ZN A 302 1555 1555 2.12 LINK ZN ZN A 302 O HOH A 407 1555 1555 2.21 LINK ZN ZN A 302 O HOH A 411 1555 1555 2.39 LINK ZN ZN A 302 O HOH A 412 1555 1555 2.17 LINK ZN ZN A 302 O HOH A 417 1555 1555 2.32 LINK ZN ZN A 303 O HOH A 502 1555 1555 2.25 SITE 1 AC1 22 GLY A 25 VAL A 26 GLY A 27 LYS A 28 SITE 2 AC1 22 SER A 29 ASN A 30 PHE A 40 ASN A 41 SITE 3 AC1 22 LEU A 42 GLU A 43 ASN A 128 LYS A 129 SITE 4 AC1 22 ASP A 131 LEU A 132 SER A 158 ALA A 159 SITE 5 AC1 22 LEU A 160 ZN A 302 HOH A 407 HOH A 412 SITE 6 AC1 22 HOH A 417 HOH A 440 SITE 1 AC2 6 SER A 29 GDP A 301 HOH A 407 HOH A 411 SITE 2 AC2 6 HOH A 412 HOH A 417 SITE 1 AC3 4 GLU A 112 HIS A 116 GLU A 149 HOH A 502 CRYST1 118.303 43.392 41.662 90.00 89.05 90.00 C 1 2 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.008453 0.000000 -0.000141 0.00000 SCALE2 0.000000 0.023046 0.000000 0.00000 SCALE3 0.000000 0.000000 0.024006 0.00000