HEADER RNA BINDING PROTEIN 20-DEC-16 5UBA TITLE HUMAN RNA PSEUDOURIDYLATE SYNTHASE DOMAIN CONTAINING 4 COMPND MOL_ID: 1; COMPND 2 MOLECULE: RNA PSEUDOURIDYLATE SYNTHASE DOMAIN-CONTAINING PROTEIN 4; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: UNP RESIDUES 89-365; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: RPUSD4; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21 (DE3) CODON PLUS RIL; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET28-MHL KEYWDS CARM1, METHYLTRANSFERASE, TP-064, STRUCTURAL GENOMICS, STRUCTURAL KEYWDS 2 GENOMICS CONSORTIUM, SGC, RNA BINDING PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR A.DONG,H.ZENG,W.TEMPEL,C.BOUNTRA,C.H.ARROWSMITH,A.M.EDWARDS, AUTHOR 2 P.J.BROWN,H.WU,STRUCTURAL GENOMICS CONSORTIUM (SGC) REVDAT 4 04-OCT-23 5UBA 1 REMARK REVDAT 3 18-APR-18 5UBA 1 REMARK REVDAT 2 22-NOV-17 5UBA 1 REMARK REVDAT 1 22-FEB-17 5UBA 0 JRNL AUTH H.ZENG,A.DONG,W.TEMPEL,C.BOUNTRA,C.H.ARROWSMITH,A.M.EDWARDS, JRNL AUTH 2 P.J.BROWN,H.WU,STRUCTURAL GENOMICS CONSORTIUM (SGC) JRNL TITL THE CRYSTAL STRUCTURE OF HUMAN PSEUDOURIDYLATE SYNTHASE JRNL TITL 2 DOMAIN CONTAINING 4. TO BE PUBLISHED JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.54 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0158 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.54 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 38.50 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 3 NUMBER OF REFLECTIONS : 43599 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.198 REMARK 3 R VALUE (WORKING SET) : 0.198 REMARK 3 FREE R VALUE : 0.212 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 2.700 REMARK 3 FREE R VALUE TEST SET COUNT : 1213 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.54 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.58 REMARK 3 REFLECTION IN BIN (WORKING SET) : 3199 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.97 REMARK 3 BIN R VALUE (WORKING SET) : 0.2440 REMARK 3 BIN FREE R VALUE SET COUNT : 110 REMARK 3 BIN FREE R VALUE : 0.2720 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2043 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 6 REMARK 3 SOLVENT ATOMS : 214 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 23.30 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.12000 REMARK 3 B22 (A**2) : -0.12000 REMARK 3 B33 (A**2) : 0.23000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.080 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.076 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.055 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 1.497 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.959 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.956 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2186 ; 0.009 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 2134 ; 0.002 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 2986 ; 1.442 ; 1.969 REMARK 3 BOND ANGLES OTHERS (DEGREES): 4944 ; 0.887 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 283 ; 5.683 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 80 ;41.523 ;23.375 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 394 ;10.751 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 11 ;13.126 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 355 ; 0.083 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2393 ; 0.006 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 415 ; 0.003 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS U VALUES : REFINED INDIVIDUALLY REMARK 4 REMARK 4 5UBA COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 23-DEC-16. REMARK 100 THE DEPOSITION ID IS D_1000225594. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 16-DEC-16 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 19-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97891 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS3 X 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : HKL-3000, SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 44925 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.540 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 11.00 REMARK 200 R MERGE (I) : 0.05400 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 6.1000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.54 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.57 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 11.20 REMARK 200 R MERGE FOR SHELL (I) : 0.84000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER 2.7.17, HKL-3000 REMARK 200 STARTING MODEL: 1XPI REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 46.76 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.31 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 20% PEG 3350, 0.2 M CACL2, VAPOR REMARK 280 DIFFUSION, SITTING DROP, TEMPERATURE 291K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 43 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y,X,Z+3/4 REMARK 290 4555 Y,-X,Z+1/4 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 52.67450 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 79.01175 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 26.33725 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 71 REMARK 465 HIS A 72 REMARK 465 HIS A 73 REMARK 465 HIS A 74 REMARK 465 HIS A 75 REMARK 465 HIS A 76 REMARK 465 HIS A 77 REMARK 465 SER A 78 REMARK 465 SER A 79 REMARK 465 GLY A 80 REMARK 465 ARG A 81 REMARK 465 GLU A 82 REMARK 465 ASN A 83 REMARK 465 PRO A 121 REMARK 465 GLY A 122 REMARK 465 VAL A 123 REMARK 465 LYS A 207 REMARK 465 GLU A 208 REMARK 465 ALA A 209 REMARK 465 GLN A 210 REMARK 465 GLY A 211 REMARK 465 GLN A 212 REMARK 465 GLN A 213 REMARK 465 GLN A 214 REMARK 465 HIS A 215 REMARK 465 HIS A 216 REMARK 465 GLY A 333 REMARK 465 SER A 334 REMARK 465 GLY A 335 REMARK 465 LYS A 336 REMARK 465 GLU A 363 REMARK 465 ASP A 364 REMARK 465 GLN A 365 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 93 CE NZ REMARK 470 LYS A 104 NZ REMARK 470 GLY A 120 CA C O REMARK 470 GLN A 124 CG CD OE1 NE2 REMARK 470 ARG A 151 NE CZ NH1 NH2 REMARK 470 ILE A 202 CD1 REMARK 470 LYS A 217 CG CD CE NZ REMARK 470 SER A 223 OG REMARK 470 LYS A 230 NZ REMARK 470 ARG A 236 CG CD NE CZ NH1 NH2 REMARK 470 ARG A 238 CG CD NE CZ NH1 NH2 REMARK 470 LYS A 299 CD CE NZ REMARK 470 GLU A 311 CD OE1 OE2 REMARK 470 ARG A 347 CZ NH1 NH2 REMARK 470 ASN A 362 CG OD1 ND2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OH TYR A 113 OE2 GLU A 155 1.88 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 HIS A 191 158.38 75.11 REMARK 500 THR A 253 -155.12 -107.25 REMARK 500 HIS A 321 76.31 -113.39 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 404 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 287 O REMARK 620 2 SER A 290 O 104.0 REMARK 620 3 SER A 290 O 102.4 3.6 REMARK 620 4 SER A 290 OG 68.4 66.2 68.1 REMARK 620 5 ASN A 293 O 106.3 89.3 86.7 151.4 REMARK 620 6 ALA A 296 O 90.3 160.9 164.1 109.0 98.9 REMARK 620 7 HOH A 548 O 142.4 80.2 83.4 80.1 111.2 80.8 REMARK 620 N 1 2 3 4 5 6 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CL A 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CL A 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CL A 403 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CA A 404 DBREF 5UBA A 89 365 UNP Q96CM3 RUSD4_HUMAN 89 365 SEQADV 5UBA MET A 71 UNP Q96CM3 INITIATING METHIONINE SEQADV 5UBA HIS A 72 UNP Q96CM3 EXPRESSION TAG SEQADV 5UBA HIS A 73 UNP Q96CM3 EXPRESSION TAG SEQADV 5UBA HIS A 74 UNP Q96CM3 EXPRESSION TAG SEQADV 5UBA HIS A 75 UNP Q96CM3 EXPRESSION TAG SEQADV 5UBA HIS A 76 UNP Q96CM3 EXPRESSION TAG SEQADV 5UBA HIS A 77 UNP Q96CM3 EXPRESSION TAG SEQADV 5UBA SER A 78 UNP Q96CM3 EXPRESSION TAG SEQADV 5UBA SER A 79 UNP Q96CM3 EXPRESSION TAG SEQADV 5UBA GLY A 80 UNP Q96CM3 EXPRESSION TAG SEQADV 5UBA ARG A 81 UNP Q96CM3 EXPRESSION TAG SEQADV 5UBA GLU A 82 UNP Q96CM3 EXPRESSION TAG SEQADV 5UBA ASN A 83 UNP Q96CM3 EXPRESSION TAG SEQADV 5UBA LEU A 84 UNP Q96CM3 EXPRESSION TAG SEQADV 5UBA TYR A 85 UNP Q96CM3 EXPRESSION TAG SEQADV 5UBA PHE A 86 UNP Q96CM3 EXPRESSION TAG SEQADV 5UBA GLN A 87 UNP Q96CM3 EXPRESSION TAG SEQADV 5UBA GLY A 88 UNP Q96CM3 EXPRESSION TAG SEQRES 1 A 295 MET HIS HIS HIS HIS HIS HIS SER SER GLY ARG GLU ASN SEQRES 2 A 295 LEU TYR PHE GLN GLY ASN VAL LEU ALA LYS ALA LEU THR SEQRES 3 A 295 ARG GLY ILE LEU HIS GLN ASP LYS ASN LEU VAL VAL ILE SEQRES 4 A 295 ASN LYS PRO TYR GLY LEU PRO VAL HIS GLY GLY PRO GLY SEQRES 5 A 295 VAL GLN LEU CYS ILE THR ASP VAL LEU PRO ILE LEU ALA SEQRES 6 A 295 LYS MET LEU HIS GLY HIS LYS ALA GLU PRO LEU HIS LEU SEQRES 7 A 295 CYS HIS ARG LEU ASP LYS GLU THR THR GLY VAL MET VAL SEQRES 8 A 295 LEU ALA TRP ASP LYS ASP MET ALA HIS GLN VAL GLN GLU SEQRES 9 A 295 LEU PHE ARG THR ARG GLN VAL VAL LYS LYS TYR TRP ALA SEQRES 10 A 295 ILE THR VAL HIS VAL PRO MET PRO SER ALA GLY VAL VAL SEQRES 11 A 295 ASP ILE PRO ILE VAL GLU LYS GLU ALA GLN GLY GLN GLN SEQRES 12 A 295 GLN HIS HIS LYS MET THR LEU SER PRO SER TYR ARG MET SEQRES 13 A 295 ASP ASP GLY LYS MET VAL LYS VAL ARG ARG SER ARG ASN SEQRES 14 A 295 ALA GLN VAL ALA VAL THR GLN TYR GLN VAL LEU SER SER SEQRES 15 A 295 THR LEU SER SER ALA LEU VAL GLU LEU GLN PRO ILE THR SEQRES 16 A 295 GLY ILE LYS HIS GLN LEU ARG VAL HIS LEU SER PHE GLY SEQRES 17 A 295 LEU ASP CYS PRO ILE LEU GLY ASP HIS LYS TYR SER ASP SEQRES 18 A 295 TRP ASN ARG LEU ALA PRO GLN LYS LEU SER VAL GLY THR SEQRES 19 A 295 LEU LYS LYS LEU GLY LEU GLU GLN SER LYS ALA ARG TYR SEQRES 20 A 295 ILE PRO LEU HIS LEU HIS ALA ARG GLN LEU ILE LEU PRO SEQRES 21 A 295 ALA LEU GLY SER GLY LYS GLU GLU LEU ASN LEU VAL CYS SEQRES 22 A 295 LYS LEU PRO ARG PHE PHE VAL HIS SER LEU HIS ARG LEU SEQRES 23 A 295 ARG LEU GLU MET PRO ASN GLU ASP GLN HET CL A 401 1 HET CL A 402 1 HET CL A 403 1 HET CA A 404 1 HET UNX A 405 1 HET UNX A 406 1 HETNAM CL CHLORIDE ION HETNAM CA CALCIUM ION HETNAM UNX UNKNOWN ATOM OR ION FORMUL 2 CL 3(CL 1-) FORMUL 5 CA CA 2+ FORMUL 6 UNX 2(X) FORMUL 8 HOH *214(H2 O) HELIX 1 AA1 LEU A 84 GLY A 98 1 15 HELIX 2 AA2 CYS A 126 GLY A 140 1 15 HELIX 3 AA3 ASP A 165 THR A 178 1 14 HELIX 4 AA4 HIS A 269 ASP A 280 1 12 HELIX 5 AA5 SER A 301 GLY A 309 1 9 HELIX 6 AA6 GLU A 311 ILE A 318 5 8 HELIX 7 AA7 PRO A 346 LEU A 356 1 11 SHEET 1 AA1 8 HIS A 101 GLN A 102 0 SHEET 2 AA1 8 LEU A 106 LYS A 111 -1 O VAL A 108 N HIS A 101 SHEET 3 AA1 8 THR A 156 ALA A 163 -1 O GLY A 158 N LYS A 111 SHEET 4 AA1 8 LEU A 322 LEU A 329 1 O ALA A 324 N THR A 157 SHEET 5 AA1 8 VAL A 182 VAL A 190 -1 N TRP A 186 O HIS A 323 SHEET 6 AA1 8 SER A 256 PRO A 263 -1 O VAL A 259 N ALA A 187 SHEET 7 AA1 8 THR A 245 SER A 252 -1 N LEU A 250 O LEU A 258 SHEET 8 AA1 8 ALA A 197 VAL A 200 -1 N VAL A 200 O THR A 245 SHEET 1 AA2 4 HIS A 147 LEU A 148 0 SHEET 2 AA2 4 THR A 156 ALA A 163 -1 O ALA A 163 N HIS A 147 SHEET 3 AA2 4 LEU A 322 LEU A 329 1 O ALA A 324 N THR A 157 SHEET 4 AA2 4 LEU A 339 VAL A 342 -1 O LEU A 341 N LEU A 327 SHEET 1 AA3 2 ILE A 204 VAL A 205 0 SHEET 2 AA3 2 THR A 219 LEU A 220 -1 O THR A 219 N VAL A 205 SHEET 1 AA4 2 TYR A 224 ASP A 227 0 SHEET 2 AA4 2 LYS A 230 LYS A 233 -1 O VAL A 232 N ARG A 225 LINK O HIS A 287 CA CA A 404 1555 1555 2.29 LINK O ASER A 290 CA CA A 404 1555 1555 2.52 LINK O BSER A 290 CA CA A 404 1555 1555 2.64 LINK OG BSER A 290 CA CA A 404 1555 1555 2.78 LINK O ASN A 293 CA CA A 404 1555 1555 2.27 LINK O ALA A 296 CA CA A 404 1555 1555 2.41 LINK CA CA A 404 O HOH A 548 1555 1555 2.33 CISPEP 1 MET A 194 PRO A 195 0 -6.09 SITE 1 AC1 3 HIS A 269 LEU A 271 ARG A 272 SITE 1 AC2 2 SER A 301 THR A 304 SITE 1 AC3 4 ARG A 325 LYS A 344 LEU A 345 HOH A 633 SITE 1 AC4 5 HIS A 287 SER A 290 ASN A 293 ALA A 296 SITE 2 AC4 5 HOH A 548 CRYST1 54.189 54.189 105.349 90.00 90.00 90.00 P 43 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.018454 0.000000 0.000000 0.00000 SCALE2 0.000000 0.018454 0.000000 0.00000 SCALE3 0.000000 0.000000 0.009492 0.00000