HEADER MEMBRANE PROTEIN 20-DEC-16 5UBC TITLE THE STRUCTURE OF THE ARABIDOPSIS THALIANA TOC75 POTRA DOMAINS COMPND MOL_ID: 1; COMPND 2 MOLECULE: PROTEIN TOC75-3, CHLOROPLASTIC; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: 75 KDA TRANSLOCON AT THE OUTER-ENVELOPE-MEMBRANE OF COMPND 5 CHLOROPLASTS 3,ATTOC75-III; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ARABIDOPSIS THALIANA; SOURCE 3 ORGANISM_COMMON: MOUSE-EAR CRESS; SOURCE 4 ORGANISM_TAXID: 3702; SOURCE 5 GENE: TOC75-3, TOC75, AT3G46740, T6H20.230; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3) KEYWDS MEMBRANE PROTEIN, POTRA, CHLOROPLAST EXPDTA X-RAY DIFFRACTION AUTHOR P.K.O'NEIL,N.NOINAJ REVDAT 7 15-NOV-23 5UBC 1 REMARK REVDAT 6 04-OCT-23 5UBC 1 REMARK REVDAT 5 11-DEC-19 5UBC 1 REMARK REVDAT 4 20-SEP-17 5UBC 1 REMARK REVDAT 3 21-JUN-17 5UBC 1 JRNL REVDAT 2 14-JUN-17 5UBC 1 JRNL REVDAT 1 07-JUN-17 5UBC 0 JRNL AUTH P.K.O'NEIL,L.G.L.RICHARDSON,Y.D.PAILA,G.PISZCZEK, JRNL AUTH 2 S.CHAKRAVARTHY,N.NOINAJ,D.SCHNELL JRNL TITL THE POTRA DOMAINS OF TOC75 EXHIBIT CHAPERONE-LIKE FUNCTION JRNL TITL 2 TO FACILITATE IMPORT INTO CHLOROPLASTS. JRNL REF PROC. NATL. ACAD. SCI. V. 114 E4868 2017 JRNL REF 2 U.S.A. JRNL REFN ESSN 1091-6490 JRNL PMID 28559331 JRNL DOI 10.1073/PNAS.1621179114 REMARK 2 REMARK 2 RESOLUTION. 2.86 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.9_1692 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.86 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 47.21 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 89.7 REMARK 3 NUMBER OF REFLECTIONS : 16654 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.230 REMARK 3 R VALUE (WORKING SET) : 0.224 REMARK 3 FREE R VALUE : 0.280 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 10.050 REMARK 3 FREE R VALUE TEST SET COUNT : 1673 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 47.2138 - 6.5466 0.83 1223 132 0.1991 0.2563 REMARK 3 2 6.5466 - 5.1983 0.88 1251 136 0.2271 0.3168 REMARK 3 3 5.1983 - 4.5418 0.90 1243 142 0.1905 0.2263 REMARK 3 4 4.5418 - 4.1268 0.89 1246 143 0.1969 0.2494 REMARK 3 5 4.1268 - 3.8312 0.89 1209 140 0.2242 0.2499 REMARK 3 6 3.8312 - 3.6054 0.89 1238 137 0.2351 0.3576 REMARK 3 7 3.6054 - 3.4249 0.90 1248 140 0.2410 0.2759 REMARK 3 8 3.4249 - 3.2758 0.91 1274 145 0.2468 0.3202 REMARK 3 9 3.2758 - 3.1497 0.91 1254 134 0.2557 0.3050 REMARK 3 10 3.1497 - 3.0411 0.92 1278 137 0.2502 0.2799 REMARK 3 11 3.0411 - 2.9460 0.93 1265 143 0.2698 0.3274 REMARK 3 12 2.9460 - 2.8618 0.91 1252 144 0.3042 0.3401 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.400 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 30.570 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.007 4575 REMARK 3 ANGLE : 1.205 6211 REMARK 3 CHIRALITY : 0.045 714 REMARK 3 PLANARITY : 0.005 822 REMARK 3 DIHEDRAL : 16.331 1647 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5UBC COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 06-JAN-17. REMARK 100 THE DEPOSITION ID IS D_1000225585. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 06-DEC-15 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 22-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : RAYONIX MX300-HS REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO HKL2000 REMARK 200 DATA SCALING SOFTWARE : SCALEPACK HKL2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 16654 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.850 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 89.9 REMARK 200 DATA REDUNDANCY : 2.400 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.15000 REMARK 200 FOR THE DATA SET : 8.8000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.85 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.90 REMARK 200 COMPLETENESS FOR SHELL (%) : 93.1 REMARK 200 DATA REDUNDANCY IN SHELL : 2.40 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : 1.00000 REMARK 200 FOR SHELL : 1.300 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER PHENIX REMARK 200 STARTING MODEL: 5UAY REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 55.91 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.79 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 100 MM HEPES:NAOH, PH7.5, 20% PEG REMARK 280 8000, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 294K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 25.22650 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 136 REMARK 465 ALA A 137 REMARK 465 MSE A 138 REMARK 465 GLY A 139 REMARK 465 SER A 140 REMARK 465 ASP A 141 REMARK 465 GLU A 142 REMARK 465 GLU A 143 REMARK 465 GLN A 144 REMARK 465 SER A 145 REMARK 465 PRO A 146 REMARK 465 ASP A 147 REMARK 465 TRP A 148 REMARK 465 ASP A 149 REMARK 465 GLY B 136 REMARK 465 ALA B 137 REMARK 465 MSE B 138 REMARK 465 GLY B 139 REMARK 465 SER B 140 REMARK 465 ASP B 141 REMARK 465 GLU B 142 REMARK 465 GLU B 143 REMARK 465 GLN B 144 REMARK 465 SER B 145 REMARK 465 PRO B 146 REMARK 465 ASP B 147 REMARK 465 TRP B 148 REMARK 465 ASP B 149 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LEU A 153 CG CD1 CD2 REMARK 470 ASN A 156 CG OD1 ND2 REMARK 470 ILE A 157 CG1 CG2 CD1 REMARK 470 GLN A 160 CG CD OE1 NE2 REMARK 470 LEU A 161 CG CD1 CD2 REMARK 470 LYS A 163 CG CD CE NZ REMARK 470 LYS A 168 CG CD CE NZ REMARK 470 LYS A 169 CG CD CE NZ REMARK 470 LYS A 171 CG CD CE NZ REMARK 470 GLU A 189 CG CD OE1 OE2 REMARK 470 LYS A 206 CG CD CE NZ REMARK 470 LYS A 224 CG CD CE NZ REMARK 470 LYS A 230 CG CD CE NZ REMARK 470 ASP A 234 CG OD1 OD2 REMARK 470 GLN A 249 CG CD OE1 NE2 REMARK 470 SER A 250 OG REMARK 470 LYS A 266 CG CD CE NZ REMARK 470 ILE A 268 CG1 CG2 CD1 REMARK 470 GLU A 269 CG CD OE1 OE2 REMARK 470 MSE A 270 CG SE CE REMARK 470 ASP A 271 CG OD1 OD2 REMARK 470 SER A 272 OG REMARK 470 ASP A 273 CG OD1 OD2 REMARK 470 MSE A 274 CG SE CE REMARK 470 LYS A 277 CG CD CE NZ REMARK 470 GLU A 278 CG CD OE1 OE2 REMARK 470 LYS A 279 CG CD CE NZ REMARK 470 LEU A 280 CG CD1 CD2 REMARK 470 ARG A 284 CG CD NE CZ NH1 NH2 REMARK 470 LYS A 288 CG CD CE NZ REMARK 470 ARG A 292 CG CD NE CZ NH1 NH2 REMARK 470 ASP A 375 CG OD1 OD2 REMARK 470 LYS A 376 CG CD CE NZ REMARK 470 LEU A 377 CG CD1 CD2 REMARK 470 GLU A 382 CG CD OE1 OE2 REMARK 470 ASN A 384 CG OD1 ND2 REMARK 470 LYS A 396 CG CD CE NZ REMARK 470 GLU A 407 CG CD OE1 OE2 REMARK 470 GLU A 433 CG CD OE1 OE2 REMARK 470 LYS A 434 CG CD CE NZ REMARK 470 GLU A 449 CG CD OE1 OE2 REMARK 470 LEU B 153 CG CD1 CD2 REMARK 470 ASN B 156 CG OD1 ND2 REMARK 470 ILE B 157 CG1 CG2 CD1 REMARK 470 GLN B 160 CG CD OE1 NE2 REMARK 470 LEU B 161 CG CD1 CD2 REMARK 470 LYS B 168 CG CD CE NZ REMARK 470 LYS B 169 CG CD CE NZ REMARK 470 LYS B 171 CG CD CE NZ REMARK 470 GLN B 183 CG CD OE1 NE2 REMARK 470 GLU B 189 CG CD OE1 OE2 REMARK 470 LYS B 206 CG CD CE NZ REMARK 470 GLU B 214 CG CD OE1 OE2 REMARK 470 LYS B 224 CG CD CE NZ REMARK 470 LYS B 230 CG CD CE NZ REMARK 470 ASP B 234 CG OD1 OD2 REMARK 470 GLN B 249 CG CD OE1 NE2 REMARK 470 SER B 250 OG REMARK 470 LYS B 266 CG CD CE NZ REMARK 470 ILE B 268 CG1 CG2 CD1 REMARK 470 GLU B 269 CG CD OE1 OE2 REMARK 470 MSE B 270 CG SE CE REMARK 470 ASP B 271 CG OD1 OD2 REMARK 470 SER B 272 OG REMARK 470 ASP B 273 CG OD1 OD2 REMARK 470 MSE B 274 CG SE CE REMARK 470 LYS B 277 CG CD CE NZ REMARK 470 GLU B 278 CG CD OE1 OE2 REMARK 470 LYS B 279 CG CD CE NZ REMARK 470 LEU B 280 CG CD1 CD2 REMARK 470 ARG B 284 CG CD NE CZ NH1 NH2 REMARK 470 LYS B 319 CG CD CE NZ REMARK 470 LYS B 355 CG CD CE NZ REMARK 470 ASP B 375 CG OD1 OD2 REMARK 470 LYS B 376 CG CD CE NZ REMARK 470 LEU B 377 CG CD1 CD2 REMARK 470 ASN B 379 CG OD1 ND2 REMARK 470 ASN B 384 CG OD1 ND2 REMARK 470 LYS B 396 CG CD CE NZ REMARK 470 GLU B 407 CG CD OE1 OE2 REMARK 470 LYS B 434 CG CD CE NZ REMARK 470 GLU B 449 CG CD OE1 OE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O ILE A 157 OG1 THR A 231 2.12 REMARK 500 NE2 GLN B 386 OE2 GLU B 447 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 HIS A 151 160.80 177.78 REMARK 500 ASN A 156 82.45 62.29 REMARK 500 ILE A 157 -67.61 -136.17 REMARK 500 SER A 165 156.78 176.77 REMARK 500 SER A 191 -9.17 65.88 REMARK 500 GLN A 249 -167.31 -125.95 REMARK 500 LEU A 261 -8.28 75.13 REMARK 500 ASP A 273 72.40 49.67 REMARK 500 MSE A 274 75.27 54.24 REMARK 500 THR A 275 -171.91 -68.51 REMARK 500 ASP A 375 160.61 174.04 REMARK 500 LEU A 377 3.66 86.85 REMARK 500 ASN A 384 -124.57 39.62 REMARK 500 LEU A 448 -63.80 -93.71 REMARK 500 HIS B 151 153.66 177.98 REMARK 500 LEU B 153 61.01 -155.60 REMARK 500 ASN B 156 82.69 59.78 REMARK 500 ILE B 157 -67.82 -136.39 REMARK 500 SER B 191 -8.23 66.13 REMARK 500 GLN B 249 -166.80 -126.71 REMARK 500 ASP B 273 73.03 48.98 REMARK 500 THR B 275 -146.51 51.10 REMARK 500 ASP B 276 -68.13 -130.68 REMARK 500 ASP B 375 158.68 178.83 REMARK 500 THR B 385 -13.04 82.81 REMARK 500 GLU B 433 -6.36 69.96 REMARK 500 LEU B 448 -64.39 -92.71 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 GLY B 152 LEU B 153 142.09 REMARK 500 REMARK 500 REMARK: NULL DBREF 5UBC A 141 449 UNP Q9STE8 TC753_ARATH 141 449 DBREF 5UBC B 141 449 UNP Q9STE8 TC753_ARATH 141 449 SEQADV 5UBC GLY A 136 UNP Q9STE8 EXPRESSION TAG SEQADV 5UBC ALA A 137 UNP Q9STE8 EXPRESSION TAG SEQADV 5UBC MSE A 138 UNP Q9STE8 EXPRESSION TAG SEQADV 5UBC GLY A 139 UNP Q9STE8 EXPRESSION TAG SEQADV 5UBC SER A 140 UNP Q9STE8 EXPRESSION TAG SEQADV 5UBC GLY B 136 UNP Q9STE8 EXPRESSION TAG SEQADV 5UBC ALA B 137 UNP Q9STE8 EXPRESSION TAG SEQADV 5UBC MSE B 138 UNP Q9STE8 EXPRESSION TAG SEQADV 5UBC GLY B 139 UNP Q9STE8 EXPRESSION TAG SEQADV 5UBC SER B 140 UNP Q9STE8 EXPRESSION TAG SEQRES 1 A 314 GLY ALA MSE GLY SER ASP GLU GLU GLN SER PRO ASP TRP SEQRES 2 A 314 ASP SER HIS GLY LEU PRO ALA ASN ILE VAL VAL GLN LEU SEQRES 3 A 314 ASN LYS LEU SER GLY PHE LYS LYS TYR LYS VAL SER ASP SEQRES 4 A 314 ILE MSE PHE PHE ASP ARG ARG ARG GLN THR THR ILE GLY SEQRES 5 A 314 THR GLU ASP SER PHE PHE GLU MSE VAL SER ILE ARG PRO SEQRES 6 A 314 GLY GLY VAL TYR THR LYS ALA GLN LEU GLN LYS GLU LEU SEQRES 7 A 314 GLU THR LEU ALA THR CYS GLY MSE PHE GLU LYS VAL ASP SEQRES 8 A 314 LEU GLU GLY LYS THR LYS PRO ASP GLY THR LEU GLY VAL SEQRES 9 A 314 THR ILE SER PHE ALA GLU SER THR TRP GLN SER ALA ASP SEQRES 10 A 314 ARG PHE ARG CYS ILE ASN VAL GLY LEU MSE VAL GLN SER SEQRES 11 A 314 LYS PRO ILE GLU MSE ASP SER ASP MSE THR ASP LYS GLU SEQRES 12 A 314 LYS LEU GLU TYR TYR ARG SER LEU GLU LYS ASP TYR LYS SEQRES 13 A 314 ARG ARG ILE ASP ARG ALA ARG PRO CYS LEU LEU PRO ALA SEQRES 14 A 314 PRO VAL TYR GLY GLU VAL MSE GLN MSE LEU ARG ASP GLN SEQRES 15 A 314 GLY LYS VAL SER ALA ARG LEU LEU GLN ARG ILE ARG ASP SEQRES 16 A 314 ARG VAL GLN LYS TRP TYR HIS ASP GLU GLY TYR ALA CYS SEQRES 17 A 314 ALA GLN VAL VAL ASN PHE GLY ASN LEU ASN THR LYS GLU SEQRES 18 A 314 VAL VAL CYS GLU VAL VAL GLU GLY ASP ILE THR GLN LEU SEQRES 19 A 314 VAL ILE GLN PHE GLN ASP LYS LEU GLY ASN VAL VAL GLU SEQRES 20 A 314 GLY ASN THR GLN VAL PRO VAL VAL ARG ARG GLU LEU PRO SEQRES 21 A 314 LYS GLN LEU ARG GLN GLY TYR VAL PHE ASN ILE GLU ALA SEQRES 22 A 314 GLY LYS LYS ALA LEU SER ASN ILE ASN SER LEU GLY LEU SEQRES 23 A 314 PHE SER ASN ILE GLU VAL ASN PRO ARG PRO ASP GLU LYS SEQRES 24 A 314 ASN GLU GLY GLY ILE ILE VAL GLU ILE LYS LEU LYS GLU SEQRES 25 A 314 LEU GLU SEQRES 1 B 314 GLY ALA MSE GLY SER ASP GLU GLU GLN SER PRO ASP TRP SEQRES 2 B 314 ASP SER HIS GLY LEU PRO ALA ASN ILE VAL VAL GLN LEU SEQRES 3 B 314 ASN LYS LEU SER GLY PHE LYS LYS TYR LYS VAL SER ASP SEQRES 4 B 314 ILE MSE PHE PHE ASP ARG ARG ARG GLN THR THR ILE GLY SEQRES 5 B 314 THR GLU ASP SER PHE PHE GLU MSE VAL SER ILE ARG PRO SEQRES 6 B 314 GLY GLY VAL TYR THR LYS ALA GLN LEU GLN LYS GLU LEU SEQRES 7 B 314 GLU THR LEU ALA THR CYS GLY MSE PHE GLU LYS VAL ASP SEQRES 8 B 314 LEU GLU GLY LYS THR LYS PRO ASP GLY THR LEU GLY VAL SEQRES 9 B 314 THR ILE SER PHE ALA GLU SER THR TRP GLN SER ALA ASP SEQRES 10 B 314 ARG PHE ARG CYS ILE ASN VAL GLY LEU MSE VAL GLN SER SEQRES 11 B 314 LYS PRO ILE GLU MSE ASP SER ASP MSE THR ASP LYS GLU SEQRES 12 B 314 LYS LEU GLU TYR TYR ARG SER LEU GLU LYS ASP TYR LYS SEQRES 13 B 314 ARG ARG ILE ASP ARG ALA ARG PRO CYS LEU LEU PRO ALA SEQRES 14 B 314 PRO VAL TYR GLY GLU VAL MSE GLN MSE LEU ARG ASP GLN SEQRES 15 B 314 GLY LYS VAL SER ALA ARG LEU LEU GLN ARG ILE ARG ASP SEQRES 16 B 314 ARG VAL GLN LYS TRP TYR HIS ASP GLU GLY TYR ALA CYS SEQRES 17 B 314 ALA GLN VAL VAL ASN PHE GLY ASN LEU ASN THR LYS GLU SEQRES 18 B 314 VAL VAL CYS GLU VAL VAL GLU GLY ASP ILE THR GLN LEU SEQRES 19 B 314 VAL ILE GLN PHE GLN ASP LYS LEU GLY ASN VAL VAL GLU SEQRES 20 B 314 GLY ASN THR GLN VAL PRO VAL VAL ARG ARG GLU LEU PRO SEQRES 21 B 314 LYS GLN LEU ARG GLN GLY TYR VAL PHE ASN ILE GLU ALA SEQRES 22 B 314 GLY LYS LYS ALA LEU SER ASN ILE ASN SER LEU GLY LEU SEQRES 23 B 314 PHE SER ASN ILE GLU VAL ASN PRO ARG PRO ASP GLU LYS SEQRES 24 B 314 ASN GLU GLY GLY ILE ILE VAL GLU ILE LYS LEU LYS GLU SEQRES 25 B 314 LEU GLU MODRES 5UBC MSE A 176 MET MODIFIED RESIDUE MODRES 5UBC MSE A 195 MET MODIFIED RESIDUE MODRES 5UBC MSE A 221 MET MODIFIED RESIDUE MODRES 5UBC MSE A 262 MET MODIFIED RESIDUE MODRES 5UBC MSE A 270 MET MODIFIED RESIDUE MODRES 5UBC MSE A 274 MET MODIFIED RESIDUE MODRES 5UBC MSE A 311 MET MODIFIED RESIDUE MODRES 5UBC MSE A 313 MET MODIFIED RESIDUE MODRES 5UBC MSE B 176 MET MODIFIED RESIDUE MODRES 5UBC MSE B 195 MET MODIFIED RESIDUE MODRES 5UBC MSE B 221 MET MODIFIED RESIDUE MODRES 5UBC MSE B 262 MET MODIFIED RESIDUE MODRES 5UBC MSE B 270 MET MODIFIED RESIDUE MODRES 5UBC MSE B 274 MET MODIFIED RESIDUE MODRES 5UBC MSE B 311 MET MODIFIED RESIDUE MODRES 5UBC MSE B 313 MET MODIFIED RESIDUE HET MSE A 176 8 HET MSE A 195 8 HET MSE A 221 8 HET MSE A 262 8 HET MSE A 270 5 HET MSE A 274 5 HET MSE A 311 8 HET MSE A 313 8 HET MSE B 176 8 HET MSE B 195 8 HET MSE B 221 8 HET MSE B 262 8 HET MSE B 270 5 HET MSE B 274 5 HET MSE B 311 8 HET MSE B 313 8 HETNAM MSE SELENOMETHIONINE FORMUL 1 MSE 16(C5 H11 N O2 SE) HELIX 1 AA1 PHE A 192 VAL A 196 5 5 HELIX 2 AA2 THR A 205 CYS A 219 1 15 HELIX 3 AA3 THR A 275 ALA A 297 1 23 HELIX 4 AA4 PRO A 303 GLY A 318 1 16 HELIX 5 AA5 SER A 321 GLU A 339 1 19 HELIX 6 AA6 GLY A 383 THR A 385 5 3 HELIX 7 AA7 GLN A 386 ARG A 392 1 7 HELIX 8 AA8 GLU A 393 LEU A 394 5 2 HELIX 9 AA9 PRO A 395 ARG A 399 5 5 HELIX 10 AB1 ASN A 405 SER A 418 1 14 HELIX 11 AB2 PHE B 192 VAL B 196 5 5 HELIX 12 AB3 THR B 205 CYS B 219 1 15 HELIX 13 AB4 ASP B 276 ALA B 297 1 22 HELIX 14 AB5 PRO B 303 GLY B 318 1 16 HELIX 15 AB6 SER B 321 GLU B 339 1 19 HELIX 16 AB7 GLN B 386 ARG B 392 1 7 HELIX 17 AB8 GLU B 393 LEU B 394 5 2 HELIX 18 AB9 PRO B 395 ARG B 399 5 5 HELIX 19 AC1 ASN B 405 SER B 418 1 14 SHEET 1 AA1 2 TYR A 170 LYS A 171 0 SHEET 2 AA1 2 VAL A 203 TYR A 204 -1 O TYR A 204 N TYR A 170 SHEET 1 AA2 4 THR A 184 THR A 185 0 SHEET 2 AA2 4 ILE A 175 ASP A 179 -1 N ASP A 179 O THR A 184 SHEET 3 AA2 4 LEU A 237 GLU A 245 1 O ILE A 241 N PHE A 178 SHEET 4 AA2 4 PHE A 222 THR A 231 -1 N GLU A 228 O THR A 240 SHEET 1 AA3 3 ARG A 253 ASN A 258 0 SHEET 2 AA3 3 GLU A 356 VAL A 362 1 O CYS A 359 N ARG A 255 SHEET 3 AA3 3 GLN A 345 GLY A 350 -1 N GLY A 350 O VAL A 358 SHEET 1 AA4 4 VAL A 380 VAL A 381 0 SHEET 2 AA4 4 ILE A 366 GLN A 374 -1 N PHE A 373 O VAL A 381 SHEET 3 AA4 4 ILE A 439 GLU A 447 1 O LEU A 445 N GLN A 374 SHEET 4 AA4 4 PHE A 422 PRO A 431 -1 N ARG A 430 O ILE A 440 SHEET 1 AA5 2 TYR B 170 VAL B 172 0 SHEET 2 AA5 2 GLY B 202 TYR B 204 -1 O GLY B 202 N VAL B 172 SHEET 1 AA6 4 THR B 184 THR B 185 0 SHEET 2 AA6 4 ILE B 175 ASP B 179 -1 N ASP B 179 O THR B 184 SHEET 3 AA6 4 LEU B 237 GLU B 245 1 O ILE B 241 N PHE B 178 SHEET 4 AA6 4 PHE B 222 THR B 231 -1 N LYS B 230 O GLY B 238 SHEET 1 AA7 3 ARG B 253 ASN B 258 0 SHEET 2 AA7 3 GLU B 356 VAL B 362 1 O CYS B 359 N ARG B 255 SHEET 3 AA7 3 GLN B 345 GLY B 350 -1 N ASN B 348 O GLU B 360 SHEET 1 AA8 3 ILE B 366 GLN B 374 0 SHEET 2 AA8 3 ILE B 439 GLU B 447 1 O LEU B 445 N GLN B 374 SHEET 3 AA8 3 PHE B 422 PRO B 431 -1 N ARG B 430 O ILE B 440 LINK C ILE A 175 N MSE A 176 1555 1555 1.33 LINK C MSE A 176 N PHE A 177 1555 1555 1.33 LINK C GLU A 194 N MSE A 195 1555 1555 1.33 LINK C MSE A 195 N VAL A 196 1555 1555 1.34 LINK C GLY A 220 N MSE A 221 1555 1555 1.33 LINK C MSE A 221 N PHE A 222 1555 1555 1.33 LINK C LEU A 261 N MSE A 262 1555 1555 1.33 LINK C MSE A 262 N VAL A 263 1555 1555 1.33 LINK C GLU A 269 N MSE A 270 1555 1555 1.33 LINK C MSE A 270 N ASP A 271 1555 1555 1.33 LINK C ASP A 273 N MSE A 274 1555 1555 1.35 LINK C MSE A 274 N THR A 275 1555 1555 1.33 LINK C VAL A 310 N MSE A 311 1555 1555 1.33 LINK C MSE A 311 N GLN A 312 1555 1555 1.33 LINK C GLN A 312 N MSE A 313 1555 1555 1.33 LINK C MSE A 313 N LEU A 314 1555 1555 1.33 LINK C ILE B 175 N MSE B 176 1555 1555 1.33 LINK C MSE B 176 N PHE B 177 1555 1555 1.33 LINK C GLU B 194 N MSE B 195 1555 1555 1.33 LINK C MSE B 195 N VAL B 196 1555 1555 1.33 LINK C GLY B 220 N MSE B 221 1555 1555 1.33 LINK C MSE B 221 N PHE B 222 1555 1555 1.33 LINK C LEU B 261 N MSE B 262 1555 1555 1.33 LINK C MSE B 262 N VAL B 263 1555 1555 1.33 LINK C GLU B 269 N MSE B 270 1555 1555 1.33 LINK C MSE B 270 N ASP B 271 1555 1555 1.33 LINK C ASP B 273 N MSE B 274 1555 1555 1.34 LINK C MSE B 274 N THR B 275 1555 1555 1.33 LINK C VAL B 310 N MSE B 311 1555 1555 1.33 LINK C MSE B 311 N GLN B 312 1555 1555 1.33 LINK C GLN B 312 N MSE B 313 1555 1555 1.33 LINK C MSE B 313 N LEU B 314 1555 1555 1.33 CISPEP 1 ASN A 156 ILE A 157 0 5.57 CISPEP 2 ASP A 234 GLY A 235 0 -15.93 CISPEP 3 ASP A 273 MSE A 274 0 2.27 CISPEP 4 ASP A 375 LYS A 376 0 -20.01 CISPEP 5 ASN B 156 ILE B 157 0 6.64 CISPEP 6 ASP B 234 GLY B 235 0 -17.83 CISPEP 7 ASP B 273 MSE B 274 0 6.23 CISPEP 8 ASP B 375 LYS B 376 0 -16.93 CRYST1 92.368 50.453 94.802 90.00 115.56 90.00 P 1 21 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.010826 0.000000 0.005177 0.00000 SCALE2 0.000000 0.019820 0.000000 0.00000 SCALE3 0.000000 0.000000 0.011692 0.00000