HEADER HYDROLASE 21-DEC-16 5UBV TITLE ATPASE DOMAIN OF I-AAA PROTEASE FROM MYCELIOPHTHORA THERMOPHILA COMPND MOL_ID: 1; COMPND 2 MOLECULE: ATPASE DOMAIN OF I-AAA PROTEASE; COMPND 3 CHAIN: A, B; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MYCELIOPHTHORA THERMOPHILA (STRAIN ATCC 42464 / SOURCE 3 BCRC 31852 / DSM 1799); SOURCE 4 ORGANISM_TAXID: 573729; SOURCE 5 STRAIN: ATCC 42464 / BCRC 31852 / DSM 1799; SOURCE 6 GENE: MYCTH_2311706; SOURCE 7 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 8 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS AAA+, PROTEASE, ATPASE, MITOCHONDRIA, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR H.SHI,S.E.GLYNN REVDAT 3 04-OCT-23 5UBV 1 REMARK REVDAT 2 01-JAN-20 5UBV 1 REMARK REVDAT 1 27-DEC-17 5UBV 0 JRNL AUTH H.SHI,S.E.GLYNN JRNL TITL STRUCTURE OF THE ATPASE DOMAIN OF I-AAA PROTEASE FROM JRNL TITL 2 MYCELIOPHTHORA THERMOPHILA JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.45 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.10.1_2155 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.45 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 44.38 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 3 NUMBER OF REFLECTIONS : 23503 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.199 REMARK 3 R VALUE (WORKING SET) : 0.196 REMARK 3 FREE R VALUE : 0.238 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.150 REMARK 3 FREE R VALUE TEST SET COUNT : 1211 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 44.3857 - 5.0932 1.00 2638 139 0.1709 0.1987 REMARK 3 2 5.0932 - 4.0435 1.00 2548 139 0.1576 0.2189 REMARK 3 3 4.0435 - 3.5326 1.00 2465 128 0.1864 0.2149 REMARK 3 4 3.5326 - 3.2097 1.00 2477 146 0.2124 0.2595 REMARK 3 5 3.2097 - 2.9797 1.00 2466 122 0.2364 0.2854 REMARK 3 6 2.9797 - 2.8041 1.00 2426 134 0.2342 0.2749 REMARK 3 7 2.8041 - 2.6637 1.00 2443 139 0.2410 0.2508 REMARK 3 8 2.6637 - 2.5477 1.00 2406 136 0.2593 0.3295 REMARK 3 9 2.5477 - 2.4497 0.99 2423 128 0.2877 0.3134 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.300 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 24.660 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 47.63 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 60.74 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.002 3790 REMARK 3 ANGLE : 0.436 5118 REMARK 3 CHIRALITY : 0.038 573 REMARK 3 PLANARITY : 0.003 691 REMARK 3 DIHEDRAL : 8.902 2304 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 7 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 1 THROUGH 63 ) REMARK 3 ORIGIN FOR THE GROUP (A): 27.5000 10.8760 100.0612 REMARK 3 T TENSOR REMARK 3 T11: 0.4288 T22: 0.3268 REMARK 3 T33: 0.2835 T12: -0.0007 REMARK 3 T13: -0.0704 T23: 0.0407 REMARK 3 L TENSOR REMARK 3 L11: 6.1090 L22: 5.2363 REMARK 3 L33: 5.6545 L12: -0.1053 REMARK 3 L13: -2.2484 L23: -1.2245 REMARK 3 S TENSOR REMARK 3 S11: -0.1726 S12: 0.2161 S13: -0.3976 REMARK 3 S21: 0.2772 S22: 0.0873 S23: -0.2331 REMARK 3 S31: 0.5195 S32: -0.1508 S33: 0.0829 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 64 THROUGH 174 ) REMARK 3 ORIGIN FOR THE GROUP (A): 21.7825 26.3194 105.4147 REMARK 3 T TENSOR REMARK 3 T11: 0.4802 T22: 0.3467 REMARK 3 T33: 0.3155 T12: 0.0459 REMARK 3 T13: -0.0900 T23: 0.0144 REMARK 3 L TENSOR REMARK 3 L11: 3.9347 L22: 3.0971 REMARK 3 L33: 4.3653 L12: -1.5804 REMARK 3 L13: -2.4439 L23: 1.8999 REMARK 3 S TENSOR REMARK 3 S11: -0.0289 S12: -0.2692 S13: 0.5107 REMARK 3 S21: 0.4897 S22: 0.0615 S23: -0.1388 REMARK 3 S31: -0.1367 S32: -0.1638 S33: -0.0091 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 175 THROUGH 246 ) REMARK 3 ORIGIN FOR THE GROUP (A): 40.8819 18.8578 76.3462 REMARK 3 T TENSOR REMARK 3 T11: 0.1703 T22: 0.4561 REMARK 3 T33: 0.3618 T12: -0.0140 REMARK 3 T13: 0.0136 T23: -0.0372 REMARK 3 L TENSOR REMARK 3 L11: 1.3282 L22: 2.4719 REMARK 3 L33: 5.5014 L12: 1.0858 REMARK 3 L13: 0.5881 L23: -1.1147 REMARK 3 S TENSOR REMARK 3 S11: -0.0240 S12: 0.2163 S13: -0.0529 REMARK 3 S21: -0.0907 S22: 0.1411 S23: -0.3210 REMARK 3 S31: 0.1389 S32: 0.1963 S33: -0.1124 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 2 THROUGH 63 ) REMARK 3 ORIGIN FOR THE GROUP (A): 39.9763 50.9819 108.0395 REMARK 3 T TENSOR REMARK 3 T11: 0.7357 T22: 0.4224 REMARK 3 T33: 0.5673 T12: 0.1149 REMARK 3 T13: -0.1056 T23: -0.1767 REMARK 3 L TENSOR REMARK 3 L11: 6.3291 L22: 2.7318 REMARK 3 L33: 1.9493 L12: -1.4698 REMARK 3 L13: -0.1735 L23: -0.0700 REMARK 3 S TENSOR REMARK 3 S11: -0.2436 S12: -0.7071 S13: 0.7339 REMARK 3 S21: 0.3763 S22: 0.0889 S23: 0.3771 REMARK 3 S31: -0.6042 S32: -0.3439 S33: 0.1936 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 64 THROUGH 123 ) REMARK 3 ORIGIN FOR THE GROUP (A): 44.5789 38.4992 93.6586 REMARK 3 T TENSOR REMARK 3 T11: 0.4018 T22: 0.3136 REMARK 3 T33: 0.2983 T12: 0.0225 REMARK 3 T13: -0.0470 T23: -0.0238 REMARK 3 L TENSOR REMARK 3 L11: 3.3891 L22: 6.0794 REMARK 3 L33: 7.0546 L12: -1.6502 REMARK 3 L13: 0.0580 L23: 2.6931 REMARK 3 S TENSOR REMARK 3 S11: 0.1241 S12: 0.4306 S13: 0.1024 REMARK 3 S21: -0.1855 S22: -0.1914 S23: 0.0986 REMARK 3 S31: -0.0801 S32: 0.2152 S33: 0.0226 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 124 THROUGH 174 ) REMARK 3 ORIGIN FOR THE GROUP (A): 47.9163 49.5433 95.5001 REMARK 3 T TENSOR REMARK 3 T11: 0.6983 T22: 0.4162 REMARK 3 T33: 0.4099 T12: -0.0509 REMARK 3 T13: -0.0854 T23: 0.0438 REMARK 3 L TENSOR REMARK 3 L11: 3.7089 L22: 3.6751 REMARK 3 L33: 7.6305 L12: 1.1869 REMARK 3 L13: 3.3381 L23: 1.1391 REMARK 3 S TENSOR REMARK 3 S11: -0.6294 S12: 0.5597 S13: 0.6053 REMARK 3 S21: -0.4009 S22: 0.2242 S23: 0.1797 REMARK 3 S31: -1.2545 S32: 0.3719 S33: 0.3686 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 175 THROUGH 245 ) REMARK 3 ORIGIN FOR THE GROUP (A): 55.1399 36.0432 127.0650 REMARK 3 T TENSOR REMARK 3 T11: 0.7524 T22: 0.3224 REMARK 3 T33: 0.3216 T12: 0.0613 REMARK 3 T13: -0.1012 T23: -0.0462 REMARK 3 L TENSOR REMARK 3 L11: 5.3782 L22: 4.6627 REMARK 3 L33: 4.2687 L12: 0.1341 REMARK 3 L13: 0.4163 L23: -3.2850 REMARK 3 S TENSOR REMARK 3 S11: -0.2147 S12: -0.3168 S13: -0.3618 REMARK 3 S21: 0.6576 S22: 0.1990 S23: 0.1375 REMARK 3 S31: 0.0334 S32: -0.2710 S33: 0.0376 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : 1 REMARK 3 NCS GROUP : 1 REMARK 3 NCS OPERATOR : 1 REMARK 3 REFERENCE SELECTION: (CHAIN A AND (RESSEQ 2:3 OR RESSEQ 5:10 REMARK 3 OR RESSEQ 12:22 OR (RESID 24 AND (NAME N REMARK 3 OR NAME CA OR NAME C OR NAME O OR NAME CB REMARK 3 OR NAME CG OR NAME CD2 OR NAME CE2 OR REMARK 3 NAME CZ )) OR RESSEQ 25:28 OR (RESID 29 REMARK 3 AND (NAME N OR NAME CA OR NAME C OR NAME REMARK 3 CB )) OR (RESID 30 AND (NAME N OR NAME CA REMARK 3 OR NAME C OR NAME CB OR NAME CG OR NAME REMARK 3 CD OR NAME CE OR NAME NZ )) OR (RESID 31 REMARK 3 AND (NAME N OR NAME CA OR NAME C OR NAME REMARK 3 CB OR NAME CG OR NAME CD2 OR NAME CE2 OR REMARK 3 NAME CZ )) OR RESSEQ 32:33 OR RESSEQ 35 REMARK 3 OR RESSEQ 39 OR (RESID 40 AND (NAME N OR REMARK 3 NAME CA OR NAME C OR NAME CB OR NAME CG REMARK 3 OR NAME CD OR NAME CE OR NAME NZ )) OR REMARK 3 RESSEQ 41:67 OR (RESID 68 AND (NAME N OR REMARK 3 NAME CA OR NAME C OR NAME O OR NAME CB OR REMARK 3 NAME CG OR NAME CD2 OR NAME CE2 OR NAME REMARK 3 CZ )) OR RESSEQ 69:70 OR (RESID 71 AND REMARK 3 (NAME N OR NAME CA OR NAME C OR NAME CB REMARK 3 OR NAME OG )) OR (RESID 72 AND (NAME N OR REMARK 3 NAME CA OR NAME C )) OR (RESID 73 AND REMARK 3 (NAME N OR NAME CA OR NAME C OR NAME CB REMARK 3 OR NAME OG )) OR RESSEQ 74 OR (RESID 76 REMARK 3 AND (NAME O OR NAME N OR NAME CA OR NAME REMARK 3 C OR NAME CB OR NAME CG OR NAME OD2)) OR REMARK 3 RESSEQ 78 OR RESSEQ 81 OR (RESID 83 AND REMARK 3 (NAME O OR NAME N OR NAME CA )) OR RESSEQ REMARK 3 84:85 OR RESSEQ 87:90 OR (RESID 91 AND REMARK 3 (NAME N OR NAME CA OR NAME C OR NAME O OR REMARK 3 NAME CB OR NAME CG OR NAME CD2 OR NAME REMARK 3 CE2 OR NAME CZ )) OR RESSEQ 92:104 OR REMARK 3 (RESID 105 AND (NAME N OR NAME CA OR NAME REMARK 3 C OR NAME CB OR NAME CG OR NAME OD1 OR REMARK 3 NAME OD2)) OR (RESID 106 AND (NAME N OR REMARK 3 NAME CA OR NAME C OR NAME CB OR NAME CG REMARK 3 OR NAME CD OR NAME OE1 OR NAME OE2)) OR REMARK 3 (RESID 107 AND (NAME N OR NAME CA OR NAME REMARK 3 C OR NAME CB OR NAME CG OR NAME CD1 OR REMARK 3 NAME CD2)) OR (RESID 108 AND (NAME N OR REMARK 3 NAME CA OR NAME C OR NAME CB OR NAME CG REMARK 3 OR NAME OD2)) OR (RESID 109 AND (NAME N REMARK 3 OR NAME CA OR NAME C OR NAME CB )) OR REMARK 3 RESSEQ 110:112 OR (RESID 124 AND (NAME N REMARK 3 OR NAME CA OR NAME C OR NAME CB OR NAME REMARK 3 CG OR NAME CD OR NAME OE1 OR NAME NE2)) REMARK 3 OR RESSEQ 125 OR (RESID 126 AND (NAME N REMARK 3 OR NAME CA OR NAME C OR NAME O OR NAME CB REMARK 3 OR NAME CG OR NAME CD1)) OR RESSEQ 127: REMARK 3 136 OR (RESID 137 AND (NAME N OR NAME CA REMARK 3 OR NAME C OR NAME CB )) OR RESSEQ 140:151 REMARK 3 OR RESSEQ 153:154 OR (RESID 155 AND (NAME REMARK 3 N OR NAME CA OR NAME C OR NAME O OR NAME REMARK 3 CB OR NAME CG OR NAME OD2)) OR RESSEQ 156: REMARK 3 163 OR (RESID 164 AND (NAME N OR NAME CA REMARK 3 OR NAME C OR NAME O OR NAME CB OR NAME CG REMARK 3 OR NAME CD2 OR NAME CE2 OR NAME CZ )) OR REMARK 3 RESSEQ 165:166 OR RESSEQ 168:190 OR REMARK 3 (RESID 191 AND (NAME O OR NAME N OR NAME REMARK 3 CA OR NAME C OR NAME CB OR NAME CG1 OR REMARK 3 NAME CG2)) OR (RESID 192 AND (NAME O OR REMARK 3 NAME N OR NAME CA )) OR RESSEQ 193:213 OR REMARK 3 RESSEQ 215:222 OR (RESID 223 AND (NAME O REMARK 3 OR NAME N OR NAME CA OR NAME C )) OR REMARK 3 (RESID 224 AND (NAME O OR NAME N OR NAME REMARK 3 CA OR NAME C OR NAME CB )) OR (RESID 225 REMARK 3 AND (NAME O OR NAME N OR NAME CA OR NAME REMARK 3 C OR NAME CB OR NAME CG OR NAME CD OR REMARK 3 NAME CE )) OR (RESID 226 AND (NAME O OR REMARK 3 NAME N OR NAME CA OR NAME C OR NAME CB OR REMARK 3 NAME CG OR NAME CD OR NAME OE1)) OR REMARK 3 (RESID 227 AND (NAME O OR NAME N OR NAME REMARK 3 CA OR NAME C OR NAME CB OR NAME CG OR REMARK 3 NAME CD OR NAME CE )) OR (RESID 228 AND REMARK 3 (NAME O OR NAME N OR NAME CA OR NAME C )) REMARK 3 OR (RESID 230 AND (NAME O OR NAME N OR REMARK 3 NAME CA OR NAME C )) OR RESSEQ 231:244 OR REMARK 3 (RESID 245 AND (NAME N OR NAME CA OR NAME REMARK 3 C OR NAME CB OR NAME CG OR NAME SD OR REMARK 3 NAME CE )))) REMARK 3 SELECTION : (CHAIN B AND (RESSEQ 2:3 OR RESSEQ 5:10 REMARK 3 OR RESSEQ 12:22 OR (RESID 24 AND (NAME N REMARK 3 OR NAME CA OR NAME C OR NAME O OR NAME CB REMARK 3 OR NAME CG OR NAME CD2 OR NAME CE2 OR REMARK 3 NAME CZ )) OR RESSEQ 25:28 OR (RESID 29 REMARK 3 AND (NAME O OR NAME N OR NAME CA OR NAME REMARK 3 C )) OR (RESID 30 AND (NAME O OR NAME N REMARK 3 OR NAME CA OR NAME C OR NAME CB OR NAME REMARK 3 CG OR NAME CD OR NAME CE )) OR (RESID 31 REMARK 3 AND (NAME O OR NAME N OR NAME CA OR NAME REMARK 3 C OR NAME CB OR NAME CD1 OR NAME CE1 OR REMARK 3 NAME CE2)) OR RESSEQ 32:33 OR RESSEQ 36 REMARK 3 OR RESSEQ 39 OR (RESID 40 AND (NAME O OR REMARK 3 NAME N OR NAME CA OR NAME C OR NAME CB OR REMARK 3 NAME CG OR NAME CD OR NAME CE )) OR REMARK 3 RESSEQ 41:67 OR (RESID 68 AND (NAME N OR REMARK 3 NAME CA OR NAME C OR NAME O OR NAME CB OR REMARK 3 NAME CG OR NAME CD2 OR NAME CE2 OR NAME REMARK 3 CZ )) OR RESSEQ 69:70 OR (RESID 71 AND REMARK 3 (NAME O OR NAME N OR NAME CA OR NAME C OR REMARK 3 NAME CB )) OR (RESID 72 AND (NAME O OR REMARK 3 NAME N OR NAME CA )) OR (RESID 73 AND REMARK 3 (NAME O OR NAME N OR NAME CA OR NAME C OR REMARK 3 NAME CB )) OR RESSEQ 74 OR (RESID 76 AND REMARK 3 (NAME O OR NAME N OR NAME CA OR NAME C OR REMARK 3 NAME CB OR NAME CG OR NAME OD2)) OR REMARK 3 (RESID 78 AND (NAME O OR NAME N OR NAME REMARK 3 CA OR NAME C OR NAME CB )) OR RESSEQ 81 REMARK 3 OR (RESID 83 AND (NAME N OR NAME CA OR REMARK 3 NAME C )) OR RESSEQ 84:85 OR RESSEQ 87:90 REMARK 3 OR (RESID 91 AND (NAME N OR NAME CA OR REMARK 3 NAME C OR NAME O OR NAME CB OR NAME CG OR REMARK 3 NAME CD2 OR NAME CE2 OR NAME CZ )) OR REMARK 3 RESSEQ 92:104 OR (RESID 105 AND (NAME O REMARK 3 OR NAME N OR NAME CA OR NAME C OR NAME CB REMARK 3 OR NAME CG OR NAME OD1)) OR (RESID 106 REMARK 3 AND (NAME O OR NAME N OR NAME CA OR NAME REMARK 3 C OR NAME CB OR NAME CG OR NAME CD OR REMARK 3 NAME OE1)) OR (RESID 107 AND (NAME O OR REMARK 3 NAME N OR NAME CA OR NAME C OR NAME CB OR REMARK 3 NAME CG OR NAME CD1)) OR (RESID 108 AND REMARK 3 (NAME O OR NAME N OR NAME CA OR NAME C OR REMARK 3 NAME CB OR NAME OD1)) OR (RESID 109 AND REMARK 3 (NAME O OR NAME N OR NAME CA OR NAME C )) REMARK 3 OR RESSEQ 110:112 OR (RESID 124 AND (NAME REMARK 3 O OR NAME N OR NAME CA OR NAME C OR NAME REMARK 3 CB OR NAME CG OR NAME CD OR NAME OE1)) OR REMARK 3 RESSEQ 125 OR (RESID 126 AND (NAME N OR REMARK 3 NAME CA OR NAME C OR NAME O OR NAME CB OR REMARK 3 NAME CG OR NAME CD1)) OR RESSEQ 127:136 REMARK 3 OR (RESID 137 AND (NAME O OR NAME N OR REMARK 3 NAME CA OR NAME C )) OR RESSEQ 140:151 OR REMARK 3 RESSEQ 153:154 OR (RESID 155 AND (NAME N REMARK 3 OR NAME CA OR NAME C OR NAME O OR NAME CB REMARK 3 OR NAME CG OR NAME OD2)) OR RESSEQ 156: REMARK 3 163 OR (RESID 164 AND (NAME N OR NAME CA REMARK 3 OR NAME C OR NAME O OR NAME CB OR NAME CG REMARK 3 OR NAME CD2 OR NAME CE2 OR NAME CZ )) OR REMARK 3 RESSEQ 165:166 OR RESSEQ 168:190 OR REMARK 3 (RESID 191 AND (NAME N OR NAME CA OR NAME REMARK 3 C OR NAME CB OR NAME CG1 OR NAME CG2 OR REMARK 3 NAME CD1)) OR (RESID 192 AND (NAME N OR REMARK 3 NAME CA OR NAME C )) OR RESSEQ 193:213 OR REMARK 3 RESSEQ 215:222 OR (RESID 223 AND (NAME N REMARK 3 OR NAME CA OR NAME C OR NAME CB )) OR REMARK 3 (RESID 224 AND (NAME N OR NAME CA OR NAME REMARK 3 C OR NAME CB OR NAME OG )) OR (RESID 225 REMARK 3 AND (NAME N OR NAME CA OR NAME C OR NAME REMARK 3 CB OR NAME CG OR NAME CD OR NAME CE OR REMARK 3 NAME NZ )) OR (RESID 226 AND (NAME N OR REMARK 3 NAME CA OR NAME C OR NAME CB OR NAME CG REMARK 3 OR NAME CD OR NAME OE1 OR NAME OE2)) OR REMARK 3 (RESID 227 AND (NAME N OR NAME CA OR NAME REMARK 3 C OR NAME CB OR NAME CG OR NAME CD OR REMARK 3 NAME CE OR NAME NZ )) OR (RESID 228 AND REMARK 3 (NAME N OR NAME CA OR NAME C OR NAME CB )) REMARK 3 OR (RESID 230 AND (NAME N OR NAME CA OR REMARK 3 NAME C OR NAME CB )) OR RESSEQ 231:236 OR REMARK 3 (RESID 237 AND (NAME N OR NAME CA OR NAME REMARK 3 C OR NAME O OR NAME CB )) OR RESSEQ 238: REMARK 3 244 OR (RESID 245 AND (NAME O OR NAME N REMARK 3 OR NAME CA OR NAME C OR NAME CB OR NAME REMARK 3 CG OR NAME SD )))) REMARK 3 ATOM PAIRS NUMBER : 1807 REMARK 3 RMSD : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5UBV COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 22-DEC-16. REMARK 100 THE DEPOSITION ID IS D_1000225571. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 20-MAY-16 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.3 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRL REMARK 200 BEAMLINE : BL14-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.18 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 325 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : NULL REMARK 200 DATA SCALING SOFTWARE : HKL-2000, HKL REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 23565 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.450 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 9.200 REMARK 200 R MERGE (I) : 0.09300 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 7.5000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.45 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.49 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 8.00 REMARK 200 R MERGE FOR SHELL (I) : 1.02500 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHENIX 1.10.1_2155 REMARK 200 STARTING MODEL: 1LV7 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 57.51 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.89 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2 M AMMONIUM CITRATE, 14% PEG 3350, REMARK 280 5 MM ADP, 5 MM MAGNESIUM CHLORIDE, PH 7.3, VAPOR DIFFUSION, REMARK 280 HANGING DROP, TEMPERATURE 293.15K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 22.95800 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 77.51250 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 43.31200 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 77.51250 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 22.95800 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 43.31200 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 36 REMARK 465 TYR A 79 REMARK 465 SER B 1 REMARK 465 ASN B 115 REMARK 465 SER B 116 REMARK 465 ARG B 117 REMARK 465 ASP B 118 REMARK 465 ALA B 119 REMARK 465 THR B 120 REMARK 465 GLY B 246 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ILE A 78 CG1 CG2 CD1 REMARK 470 ARG A 117 CG CD NE CZ NH1 NH2 REMARK 470 GLU A 237 CG CD OE1 OE2 REMARK 470 GLU B 29 CG CD OE1 OE2 REMARK 470 ARG B 114 CG CD NE CZ NH1 NH2 REMARK 470 TYR B 121 CG CD1 CD2 CE1 CE2 CZ OH REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OE2 GLU A 74 O HOH A 401 2.18 REMARK 500 OH TYR B 79 O HOH B 401 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 CYS A 11 62.43 -154.99 REMARK 500 ASN A 27 87.45 -155.23 REMARK 500 ARG A 114 -163.30 56.69 REMARK 500 GLN A 138 -117.18 38.75 REMARK 500 ASN A 139 70.45 -104.26 REMARK 500 ARG A 163 -120.11 -124.20 REMARK 500 ASN B 27 86.47 -154.75 REMARK 500 VAL B 122 70.33 55.81 REMARK 500 ARG B 163 -119.22 -124.54 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CIT A 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ADP A 302 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL B 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ADP B 302 DBREF 5UBV A 3 246 UNP G2QPI5 G2QPI5_MYCTT 240 483 DBREF 5UBV B 3 246 UNP G2QPI5 G2QPI5_MYCTT 240 483 SEQADV 5UBV SER A 1 UNP G2QPI5 EXPRESSION TAG SEQADV 5UBV ASN A 2 UNP G2QPI5 EXPRESSION TAG SEQADV 5UBV SER B 1 UNP G2QPI5 EXPRESSION TAG SEQADV 5UBV ASN B 2 UNP G2QPI5 EXPRESSION TAG SEQRES 1 A 246 SER ASN ALA ARG PHE SER ASP VAL HIS GLY CYS ASP GLU SEQRES 2 A 246 ALA LYS GLU GLU LEU GLN GLU LEU VAL GLU PHE LEU ARG SEQRES 3 A 246 ASN PRO GLU LYS PHE SER ASN LEU GLY GLY LYS LEU PRO SEQRES 4 A 246 LYS GLY VAL LEU LEU VAL GLY PRO PRO GLY THR GLY LYS SEQRES 5 A 246 THR LEU LEU ALA ARG ALA VAL ALA GLY GLU ALA GLY VAL SEQRES 6 A 246 PRO PHE PHE TYR MET SER GLY SER GLU PHE ASP GLU ILE SEQRES 7 A 246 TYR VAL GLY VAL GLY ALA LYS ARG VAL ARG GLU LEU PHE SEQRES 8 A 246 ASN ALA ALA LYS ALA LYS ALA PRO SER ILE VAL PHE ILE SEQRES 9 A 246 ASP GLU LEU ASP ALA ILE GLY GLY ARG ARG ASN SER ARG SEQRES 10 A 246 ASP ALA THR TYR VAL ARG GLN THR LEU ASN GLN LEU LEU SEQRES 11 A 246 THR GLU MET ASP GLY PHE ALA GLN ASN SER GLY VAL ILE SEQRES 12 A 246 ILE LEU GLY ALA THR ASN PHE PRO GLU SER LEU ASP LYS SEQRES 13 A 246 ALA LEU THR ARG PRO GLY ARG PHE ASP ARG HIS VAL HIS SEQRES 14 A 246 VAL SER LEU PRO ASP VAL ARG GLY ARG ILE ALA ILE LEU SEQRES 15 A 246 LYS HIS HIS ALA LYS LYS ILE LYS ILE GLY SER ASP VAL SEQRES 16 A 246 ASN ILE ALA ALA ILE ALA ALA ARG THR SER GLY LEU SER SEQRES 17 A 246 GLY ALA GLU LEU GLU ASN ILE VAL ASN GLN ALA ALA VAL SEQRES 18 A 246 HIS ALA SER LYS GLU LYS ALA LYS ALA VAL MET GLN ALA SEQRES 19 A 246 HIS PHE GLU TRP ALA LYS ASP LYS VAL ILE MET GLY SEQRES 1 B 246 SER ASN ALA ARG PHE SER ASP VAL HIS GLY CYS ASP GLU SEQRES 2 B 246 ALA LYS GLU GLU LEU GLN GLU LEU VAL GLU PHE LEU ARG SEQRES 3 B 246 ASN PRO GLU LYS PHE SER ASN LEU GLY GLY LYS LEU PRO SEQRES 4 B 246 LYS GLY VAL LEU LEU VAL GLY PRO PRO GLY THR GLY LYS SEQRES 5 B 246 THR LEU LEU ALA ARG ALA VAL ALA GLY GLU ALA GLY VAL SEQRES 6 B 246 PRO PHE PHE TYR MET SER GLY SER GLU PHE ASP GLU ILE SEQRES 7 B 246 TYR VAL GLY VAL GLY ALA LYS ARG VAL ARG GLU LEU PHE SEQRES 8 B 246 ASN ALA ALA LYS ALA LYS ALA PRO SER ILE VAL PHE ILE SEQRES 9 B 246 ASP GLU LEU ASP ALA ILE GLY GLY ARG ARG ASN SER ARG SEQRES 10 B 246 ASP ALA THR TYR VAL ARG GLN THR LEU ASN GLN LEU LEU SEQRES 11 B 246 THR GLU MET ASP GLY PHE ALA GLN ASN SER GLY VAL ILE SEQRES 12 B 246 ILE LEU GLY ALA THR ASN PHE PRO GLU SER LEU ASP LYS SEQRES 13 B 246 ALA LEU THR ARG PRO GLY ARG PHE ASP ARG HIS VAL HIS SEQRES 14 B 246 VAL SER LEU PRO ASP VAL ARG GLY ARG ILE ALA ILE LEU SEQRES 15 B 246 LYS HIS HIS ALA LYS LYS ILE LYS ILE GLY SER ASP VAL SEQRES 16 B 246 ASN ILE ALA ALA ILE ALA ALA ARG THR SER GLY LEU SER SEQRES 17 B 246 GLY ALA GLU LEU GLU ASN ILE VAL ASN GLN ALA ALA VAL SEQRES 18 B 246 HIS ALA SER LYS GLU LYS ALA LYS ALA VAL MET GLN ALA SEQRES 19 B 246 HIS PHE GLU TRP ALA LYS ASP LYS VAL ILE MET GLY HET CIT A 301 13 HET ADP A 302 27 HET GOL B 301 6 HET ADP B 302 27 HETNAM CIT CITRIC ACID HETNAM ADP ADENOSINE-5'-DIPHOSPHATE HETNAM GOL GLYCEROL HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 3 CIT C6 H8 O7 FORMUL 4 ADP 2(C10 H15 N5 O10 P2) FORMUL 5 GOL C3 H8 O3 FORMUL 7 HOH *58(H2 O) HELIX 1 AA1 ARG A 4 VAL A 8 5 5 HELIX 2 AA2 CYS A 11 ASN A 27 1 17 HELIX 3 AA3 ASN A 27 ASN A 33 1 7 HELIX 4 AA4 GLY A 51 GLY A 64 1 14 HELIX 5 AA5 SER A 73 ASP A 76 5 4 HELIX 6 AA6 VAL A 82 LYS A 97 1 16 HELIX 7 AA7 GLU A 106 ILE A 110 5 5 HELIX 8 AA8 ASP A 118 GLY A 135 1 18 HELIX 9 AA9 PHE A 150 LEU A 154 5 5 HELIX 10 AB1 ASP A 174 LYS A 187 1 14 HELIX 11 AB2 ASN A 196 ARG A 203 1 8 HELIX 12 AB3 SER A 208 GLU A 226 1 19 HELIX 13 AB4 MET A 232 GLY A 246 1 15 HELIX 14 AB5 ARG B 4 VAL B 8 5 5 HELIX 15 AB6 CYS B 11 ASN B 27 1 17 HELIX 16 AB7 ASN B 27 LEU B 34 1 8 HELIX 17 AB8 GLY B 51 GLY B 64 1 14 HELIX 18 AB9 VAL B 82 LYS B 97 1 16 HELIX 19 AC1 GLU B 106 GLY B 112 1 7 HELIX 20 AC2 ARG B 123 PHE B 136 1 14 HELIX 21 AC3 PHE B 150 LEU B 154 5 5 HELIX 22 AC4 ASP B 174 LYS B 187 1 14 HELIX 23 AC5 ASN B 196 ARG B 203 1 8 HELIX 24 AC6 SER B 208 GLU B 226 1 19 HELIX 25 AC7 MET B 232 MET B 245 1 14 SHEET 1 AA1 5 PHE A 67 SER A 71 0 SHEET 2 AA1 5 SER A 100 ASP A 105 1 O ASP A 105 N MET A 70 SHEET 3 AA1 5 VAL A 142 THR A 148 1 O LEU A 145 N ILE A 104 SHEET 4 AA1 5 GLY A 41 VAL A 45 1 N LEU A 44 O GLY A 146 SHEET 5 AA1 5 PHE A 164 HIS A 169 1 O ARG A 166 N LEU A 43 SHEET 1 AA2 5 PHE B 67 SER B 71 0 SHEET 2 AA2 5 SER B 100 ASP B 105 1 O ASP B 105 N MET B 70 SHEET 3 AA2 5 VAL B 142 THR B 148 1 O ILE B 143 N VAL B 102 SHEET 4 AA2 5 GLY B 41 VAL B 45 1 N LEU B 44 O GLY B 146 SHEET 5 AA2 5 PHE B 164 HIS B 169 1 O ARG B 166 N LEU B 43 CISPEP 1 ALA A 98 PRO A 99 0 -0.49 CISPEP 2 ALA B 98 PRO B 99 0 0.29 SITE 1 AC1 5 ASP A 174 VAL A 175 ARG A 178 SER A 205 SITE 2 AC1 5 SER A 224 SITE 1 AC2 13 ASP A 7 HIS A 9 GLY A 49 THR A 50 SITE 2 AC2 13 GLY A 51 LYS A 52 THR A 53 LEU A 54 SITE 3 AC2 13 HIS A 185 GLY A 209 ALA A 210 GLU A 213 SITE 4 AC2 13 HOH A 412 SITE 1 AC3 3 ARG B 88 GLU B 89 ASN B 92 SITE 1 AC4 15 ASP B 7 HIS B 9 GLY B 49 THR B 50 SITE 2 AC4 15 GLY B 51 LYS B 52 THR B 53 LEU B 54 SITE 3 AC4 15 ILE B 181 HIS B 185 GLY B 209 ALA B 210 SITE 4 AC4 15 GLU B 213 HOH B 408 HOH B 420 CRYST1 45.916 86.624 155.025 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.021779 0.000000 0.000000 0.00000 SCALE2 0.000000 0.011544 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006451 0.00000