HEADER IMMUNE SYSTEM 21-DEC-16 5UBX TITLE CRYSTAL STRUCTURE OF A MUTANT MIGG2B FC HETERODIMER IN COMPLEX WITH TITLE 2 PROTEIN A PEPTIDE ANALOG Z34C COMPND MOL_ID: 1; COMPND 2 MOLECULE: IG GAMMA-2B CHAIN C REGION; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: UNP RESIDUES 108-335; COMPND 5 ENGINEERED: YES; COMPND 6 MUTATION: YES; COMPND 7 MOL_ID: 2; COMPND 8 MOLECULE: IG GAMMA-2B CHAIN C REGION; COMPND 9 CHAIN: B; COMPND 10 FRAGMENT: UNP RESIDUES 108-335; COMPND 11 ENGINEERED: YES; COMPND 12 MUTATION: YES; COMPND 13 MOL_ID: 3; COMPND 14 MOLECULE: PEPTIDE ANALOG OF B-DOMAIN FROM PROTEIN A - Z34C; COMPND 15 CHAIN: Z; COMPND 16 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MUS MUSCULUS; SOURCE 3 ORGANISM_COMMON: MOUSE; SOURCE 4 ORGANISM_TAXID: 10090; SOURCE 5 GENE: IGH-3; SOURCE 6 EXPRESSION_SYSTEM: HOMO SAPIENS; SOURCE 7 EXPRESSION_SYSTEM_COMMON: HUMAN; SOURCE 8 EXPRESSION_SYSTEM_TAXID: 9606; SOURCE 9 EXPRESSION_SYSTEM_CELL_LINE: EXPI293F; SOURCE 10 MOL_ID: 2; SOURCE 11 ORGANISM_SCIENTIFIC: MUS MUSCULUS; SOURCE 12 ORGANISM_COMMON: MOUSE; SOURCE 13 ORGANISM_TAXID: 10090; SOURCE 14 GENE: IGH-3; SOURCE 15 EXPRESSION_SYSTEM: HOMO SAPIENS; SOURCE 16 EXPRESSION_SYSTEM_COMMON: HUMAN; SOURCE 17 EXPRESSION_SYSTEM_TAXID: 9606; SOURCE 18 EXPRESSION_SYSTEM_CELL_LINE: EXPI293F; SOURCE 19 MOL_ID: 3; SOURCE 20 SYNTHETIC: YES; SOURCE 21 ORGANISM_SCIENTIFIC: STAPHYLOCOCCUS AUREUS; SOURCE 22 ORGANISM_TAXID: 1280 KEYWDS PROTEIN A, FC COMPLEX, B-DOMAIN, Z-DOMAIN, IMMUNOGLOBULIN FOLD, KEYWDS 2 IMMUNE SYSTEM EXPDTA X-RAY DIFFRACTION AUTHOR A.A.ARMSTRONG,A.ZWOLAK,G.L.GILLILAND REVDAT 5 04-OCT-23 5UBX 1 HETSYN LINK REVDAT 4 29-JUL-20 5UBX 1 COMPND REMARK HETNAM LINK REVDAT 4 2 1 SITE ATOM REVDAT 3 08-NOV-17 5UBX 1 JRNL REVDAT 2 04-OCT-17 5UBX 1 JRNL REVDAT 1 20-SEP-17 5UBX 0 JRNL AUTH A.ZWOLAK,A.A.ARMSTRONG,S.H.TAM,J.R.PARDINAS,D.R.GOULET, JRNL AUTH 2 S.ZHENG,K.BROSNAN,E.EMMELL,J.LUO,G.L.GILLILAND,M.L.CHIU JRNL TITL MODULATION OF PROTEIN A BINDING ALLOWS SINGLE-STEP JRNL TITL 2 PURIFICATION OF MOUSE BISPECIFIC ANTIBODIES THAT RETAIN FCRN JRNL TITL 3 BINDING. JRNL REF MABS V. 9 1306 2017 JRNL REFN ESSN 1942-0870 JRNL PMID 28898162 JRNL DOI 10.1080/19420862.2017.1375639 REMARK 2 REMARK 2 RESOLUTION. 2.70 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX DEV_1428 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.70 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 38.14 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.370 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 3 NUMBER OF REFLECTIONS : 19947 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.212 REMARK 3 R VALUE (WORKING SET) : 0.209 REMARK 3 FREE R VALUE : 0.257 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.900 REMARK 3 FREE R VALUE TEST SET COUNT : 977 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 38.1427 - 5.1614 0.99 2884 144 0.2019 0.2384 REMARK 3 2 5.1614 - 4.0983 1.00 2720 156 0.1770 0.2252 REMARK 3 3 4.0983 - 3.5807 1.00 2706 143 0.2043 0.2694 REMARK 3 4 3.5807 - 3.2535 1.00 2678 136 0.2272 0.2973 REMARK 3 5 3.2535 - 3.0204 1.00 2694 125 0.2539 0.2988 REMARK 3 6 3.0204 - 2.8424 1.00 2663 135 0.2659 0.2894 REMARK 3 7 2.8424 - 2.7001 0.99 2625 138 0.2909 0.3706 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.420 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 27.830 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.005 3502 REMARK 3 ANGLE : 0.858 4788 REMARK 3 CHIRALITY : 0.057 594 REMARK 3 PLANARITY : 0.004 581 REMARK 3 DIHEDRAL : 11.308 1265 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5UBX COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 10-JAN-17. REMARK 100 THE DEPOSITION ID IS D_1000225575. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 15-FEB-15 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 17-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.000 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XDS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 19956 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.700 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 200 DATA REDUNDANCY : 6.330 REMARK 200 R MERGE (I) : 0.05300 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 21.8500 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.70 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.77 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.0 REMARK 200 DATA REDUNDANCY IN SHELL : 6.37 REMARK 200 R MERGE FOR SHELL (I) : 0.80200 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.480 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER 2.5.6 REMARK 200 STARTING MODEL: 2RGS REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 59.90 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.07 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 17% PEG 3350, 0.2 M LICL, 0.1 M TRIS, REMARK 280 PH 8.0, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 43 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y+1/2,X+1/2,Z+3/4 REMARK 290 4555 Y+1/2,-X+1/2,Z+1/4 REMARK 290 5555 -X+1/2,Y+1/2,-Z+3/4 REMARK 290 6555 X+1/2,-Y+1/2,-Z+1/4 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 67.53500 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 50.74500 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 50.74500 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 101.30250 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 50.74500 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 50.74500 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 33.76750 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 50.74500 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 50.74500 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 101.30250 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 50.74500 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 50.74500 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 33.76750 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 67.53500 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 7410 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 22550 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: 35.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, Z, C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 218 REMARK 465 SER A 219 REMARK 465 CYS A 220 REMARK 465 PRO A 221 REMARK 465 PRO A 222 REMARK 465 CYS A 223 REMARK 465 LYS A 224 REMARK 465 GLU A 225 REMARK 465 CYS A 226 REMARK 465 HIS A 227 REMARK 465 LYS A 228 REMARK 465 CYS A 229 REMARK 465 PRO A 230 REMARK 465 ALA A 231 REMARK 465 PRO A 232 REMARK 465 ASN A 233 REMARK 465 LEU A 234 REMARK 465 GLU A 235 REMARK 465 GLY A 236 REMARK 465 GLY A 237 REMARK 465 PRO A 238 REMARK 465 SER A 239 REMARK 465 VAL A 240 REMARK 465 ASP A 295 REMARK 465 TYR A 296 REMARK 465 ASN A 297 REMARK 465 SER A 298 REMARK 465 THR A 299 REMARK 465 ASN A 325 REMARK 465 LYS A 326 REMARK 465 ASP A 327 REMARK 465 LEU A 328 REMARK 465 PRO A 329 REMARK 465 SER A 330 REMARK 465 ARG A 443 REMARK 465 SER A 444 REMARK 465 PRO A 445 REMARK 465 GLY A 446 REMARK 465 LYS A 447 REMARK 465 HIS B 212 REMARK 465 HIS B 213 REMARK 465 HIS B 214 REMARK 465 HIS B 215 REMARK 465 HIS B 216 REMARK 465 HIS B 217 REMARK 465 GLY B 218 REMARK 465 SER B 219 REMARK 465 CYS B 220 REMARK 465 PRO B 221 REMARK 465 PRO B 222 REMARK 465 CYS B 223 REMARK 465 LYS B 224 REMARK 465 GLU B 225 REMARK 465 CYS B 226 REMARK 465 HIS B 227 REMARK 465 LYS B 228 REMARK 465 CYS B 229 REMARK 465 PRO B 230 REMARK 465 ALA B 231 REMARK 465 PRO B 232 REMARK 465 ASN B 233 REMARK 465 LEU B 234 REMARK 465 GLU B 235 REMARK 465 GLY B 236 REMARK 465 GLY B 237 REMARK 465 ASN B 325 REMARK 465 LYS B 326 REMARK 465 ASP B 327 REMARK 465 LEU B 328 REMARK 465 PRO B 329 REMARK 465 SER B 330 REMARK 465 PRO B 445 REMARK 465 GLY B 446 REMARK 465 LYS B 447 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 PHE A 241 CG CD1 CD2 CE1 CE2 CZ REMARK 470 VAL A 264 CG1 CG2 REMARK 470 ASP A 265 CG OD1 OD2 REMARK 470 VAL A 266 CG1 CG2 REMARK 470 GLU A 268 CG CD OE1 OE2 REMARK 470 ASP A 270 CG OD1 OD2 REMARK 470 VAL A 273 CG1 CG2 REMARK 470 GLN A 290 CG CD OE1 NE2 REMARK 470 THR A 291 OG1 CG2 REMARK 470 HIS A 292 CG ND1 CD2 CE1 NE2 REMARK 470 ARG A 293 CG CD NE CZ NH1 NH2 REMARK 470 GLU A 294 CG CD OE1 OE2 REMARK 470 ILE A 300 CG1 CG2 CD1 REMARK 470 ARG A 301 CG CD NE CZ NH1 NH2 REMARK 470 VAL A 303 CG1 CG2 REMARK 470 GLU A 318 CG CD OE1 OE2 REMARK 470 LYS A 320 CG CD CE NZ REMARK 470 LYS A 322 CG CD CE NZ REMARK 470 ASN A 324 CG OD1 ND2 REMARK 470 ILE A 332 CG1 CG2 CD1 REMARK 470 GLU A 333 CG CD OE1 OE2 REMARK 470 LYS A 340 CD CE NZ REMARK 470 LYS A 361 CD CE NZ REMARK 470 LYS A 419 CG CD CE NZ REMARK 470 LYS B 258 CG CD CE NZ REMARK 470 GLU B 268 CG CD OE1 OE2 REMARK 470 ASP B 269 CG OD1 OD2 REMARK 470 ASP B 270 CG OD1 OD2 REMARK 470 ASP B 272 CG OD1 OD2 REMARK 470 VAL B 273 CG1 CG2 REMARK 470 GLN B 274 CG CD OE1 NE2 REMARK 470 VAL B 284 CG1 CG2 REMARK 470 GLN B 288 CG CD OE1 NE2 REMARK 470 ARG B 293 CG CD NE CZ NH1 NH2 REMARK 470 GLN B 311 CG CD OE1 NE2 REMARK 470 ASP B 312 CG OD1 OD2 REMARK 470 LYS B 317 CG CD CE NZ REMARK 470 GLU B 318 CG CD OE1 OE2 REMARK 470 LYS B 320 CG CD CE NZ REMARK 470 VAL B 323 CG1 CG2 REMARK 470 ASN B 324 CG OD1 ND2 REMARK 470 ILE B 332 CG1 CG2 CD1 REMARK 470 GLU B 333 CG CD OE1 OE2 REMARK 470 THR B 335 OG1 CG2 REMARK 470 LYS B 340 CG CD CE NZ REMARK 470 ASN B 384 CG OD1 ND2 REMARK 470 LYS B 419 CG CD CE NZ REMARK 470 LYS B 433 CG CD CE NZ REMARK 470 SER B 444 OG REMARK 470 GLU Z 11 CG CD OE1 OE2 REMARK 470 LEU Z 18 CG CD1 CD2 REMARK 470 GLU Z 21 CG CD OE1 OE2 REMARK 470 GLN Z 22 CG CD OE1 NE2 REMARK 470 LYS Z 28 CD CE NZ REMARK 470 SER Z 29 OG REMARK 470 ASP Z 33 CG OD1 OD2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 ND2 ASN B 297 C2 NAG D 1 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 265 69.99 63.65 REMARK 500 ASP A 272 97.76 -65.01 REMARK 500 ASN A 281 14.89 59.08 REMARK 500 REMARK 500 REMARK: NULL REMARK 610 REMARK 610 MISSING HETEROATOM REMARK 610 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 610 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 610 I=INSERTION CODE): REMARK 610 M RES C SSEQI REMARK 610 NAG C 1 DBREF 5UBX A 220 447 UNP P01867 IGG2B_MOUSE 108 335 DBREF 5UBX B 220 447 UNP P01867 IGG2B_MOUSE 108 335 DBREF 5UBX Z 1 34 PDB 5UBX 5UBX 1 34 SEQADV 5UBX GLY A 218 UNP P01867 EXPRESSION TAG SEQADV 5UBX SER A 219 UNP P01867 EXPRESSION TAG SEQADV 5UBX THR A 307 UNP P01867 PRO 195 ENGINEERED MUTATION SEQADV 5UBX LEU A 309 UNP P01867 GLN 197 ENGINEERED MUTATION SEQADV 5UBX LYS A 370 UNP P01867 VAL 258 ENGINEERED MUTATION SEQADV 5UBX ARG A 409 UNP P01867 LYS 297 ENGINEERED MUTATION SEQADV 5UBX HIS B 212 UNP P01867 EXPRESSION TAG SEQADV 5UBX HIS B 213 UNP P01867 EXPRESSION TAG SEQADV 5UBX HIS B 214 UNP P01867 EXPRESSION TAG SEQADV 5UBX HIS B 215 UNP P01867 EXPRESSION TAG SEQADV 5UBX HIS B 216 UNP P01867 EXPRESSION TAG SEQADV 5UBX HIS B 217 UNP P01867 EXPRESSION TAG SEQADV 5UBX GLY B 218 UNP P01867 EXPRESSION TAG SEQADV 5UBX SER B 219 UNP P01867 EXPRESSION TAG SEQADV 5UBX ASP B 253 UNP P01867 ILE 141 ENGINEERED MUTATION SEQADV 5UBX LEU B 405 UNP P01867 PHE 293 ENGINEERED MUTATION SEQRES 1 A 230 GLY SER CYS PRO PRO CYS LYS GLU CYS HIS LYS CYS PRO SEQRES 2 A 230 ALA PRO ASN LEU GLU GLY GLY PRO SER VAL PHE ILE PHE SEQRES 3 A 230 PRO PRO ASN ILE LYS ASP VAL LEU MET ILE SER LEU THR SEQRES 4 A 230 PRO LYS VAL THR CYS VAL VAL VAL ASP VAL SER GLU ASP SEQRES 5 A 230 ASP PRO ASP VAL GLN ILE SER TRP PHE VAL ASN ASN VAL SEQRES 6 A 230 GLU VAL HIS THR ALA GLN THR GLN THR HIS ARG GLU ASP SEQRES 7 A 230 TYR ASN SER THR ILE ARG VAL VAL SER THR LEU THR ILE SEQRES 8 A 230 LEU HIS GLN ASP TRP MET SER GLY LYS GLU PHE LYS CYS SEQRES 9 A 230 LYS VAL ASN ASN LYS ASP LEU PRO SER PRO ILE GLU ARG SEQRES 10 A 230 THR ILE SER LYS ILE LYS GLY LEU VAL ARG ALA PRO GLN SEQRES 11 A 230 VAL TYR ILE LEU PRO PRO PRO ALA GLU GLN LEU SER ARG SEQRES 12 A 230 LYS ASP VAL SER LEU THR CYS LEU VAL LYS GLY PHE ASN SEQRES 13 A 230 PRO GLY ASP ILE SER VAL GLU TRP THR SER ASN GLY HIS SEQRES 14 A 230 THR GLU GLU ASN TYR LYS ASP THR ALA PRO VAL LEU ASP SEQRES 15 A 230 SER ASP GLY SER TYR PHE ILE TYR SER ARG LEU ASN MET SEQRES 16 A 230 LYS THR SER LYS TRP GLU LYS THR ASP SER PHE SER CYS SEQRES 17 A 230 ASN VAL ARG HIS GLU GLY LEU LYS ASN TYR TYR LEU LYS SEQRES 18 A 230 LYS THR ILE SER ARG SER PRO GLY LYS SEQRES 1 B 236 HIS HIS HIS HIS HIS HIS GLY SER CYS PRO PRO CYS LYS SEQRES 2 B 236 GLU CYS HIS LYS CYS PRO ALA PRO ASN LEU GLU GLY GLY SEQRES 3 B 236 PRO SER VAL PHE ILE PHE PRO PRO ASN ILE LYS ASP VAL SEQRES 4 B 236 LEU MET ASP SER LEU THR PRO LYS VAL THR CYS VAL VAL SEQRES 5 B 236 VAL ASP VAL SER GLU ASP ASP PRO ASP VAL GLN ILE SER SEQRES 6 B 236 TRP PHE VAL ASN ASN VAL GLU VAL HIS THR ALA GLN THR SEQRES 7 B 236 GLN THR HIS ARG GLU ASP TYR ASN SER THR ILE ARG VAL SEQRES 8 B 236 VAL SER THR LEU PRO ILE GLN HIS GLN ASP TRP MET SER SEQRES 9 B 236 GLY LYS GLU PHE LYS CYS LYS VAL ASN ASN LYS ASP LEU SEQRES 10 B 236 PRO SER PRO ILE GLU ARG THR ILE SER LYS ILE LYS GLY SEQRES 11 B 236 LEU VAL ARG ALA PRO GLN VAL TYR ILE LEU PRO PRO PRO SEQRES 12 B 236 ALA GLU GLN LEU SER ARG LYS ASP VAL SER LEU THR CYS SEQRES 13 B 236 LEU VAL VAL GLY PHE ASN PRO GLY ASP ILE SER VAL GLU SEQRES 14 B 236 TRP THR SER ASN GLY HIS THR GLU GLU ASN TYR LYS ASP SEQRES 15 B 236 THR ALA PRO VAL LEU ASP SER ASP GLY SER TYR LEU ILE SEQRES 16 B 236 TYR SER LYS LEU ASN MET LYS THR SER LYS TRP GLU LYS SEQRES 17 B 236 THR ASP SER PHE SER CYS ASN VAL ARG HIS GLU GLY LEU SEQRES 18 B 236 LYS ASN TYR TYR LEU LYS LYS THR ILE SER ARG SER PRO SEQRES 19 B 236 GLY LYS SEQRES 1 Z 34 PHE ASN MET GLN CYS GLN ARG ARG PHE TYR GLU ALA LEU SEQRES 2 Z 34 HIS ASP PRO ASN LEU ASN GLU GLU GLN ARG ASN ALA LYS SEQRES 3 Z 34 ILE LYS SER ILE ARG ASP ASP CYS HET NAG C 1 14 HET BMA C 2 11 HET MAN C 3 11 HET NAG C 4 14 HET MAN C 5 11 HET NAG C 6 14 HET NAG D 1 14 HET NAG D 2 14 HET BMA D 3 11 HET MAN D 4 11 HET NAG D 5 14 HET MAN D 6 11 HET NAG D 7 14 HET FUC D 8 10 HETNAM NAG 2-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE HETNAM BMA BETA-D-MANNOPYRANOSE HETNAM MAN ALPHA-D-MANNOPYRANOSE HETNAM FUC ALPHA-L-FUCOPYRANOSE HETSYN NAG N-ACETYL-BETA-D-GLUCOSAMINE; 2-ACETAMIDO-2-DEOXY-BETA- HETSYN 2 NAG D-GLUCOSE; 2-ACETAMIDO-2-DEOXY-D-GLUCOSE; 2-ACETAMIDO- HETSYN 3 NAG 2-DEOXY-GLUCOSE; N-ACETYL-D-GLUCOSAMINE HETSYN BMA BETA-D-MANNOSE; D-MANNOSE; MANNOSE HETSYN MAN ALPHA-D-MANNOSE; D-MANNOSE; MANNOSE HETSYN FUC ALPHA-L-FUCOSE; 6-DEOXY-ALPHA-L-GALACTOPYRANOSE; L- HETSYN 2 FUC FUCOSE; FUCOSE FORMUL 4 NAG 7(C8 H15 N O6) FORMUL 4 BMA 2(C6 H12 O6) FORMUL 4 MAN 4(C6 H12 O6) FORMUL 5 FUC C6 H12 O5 FORMUL 6 HOH *42(H2 O) HELIX 1 AA1 ASN A 246 MET A 252 1 7 HELIX 2 AA2 LEU A 309 SER A 315 1 7 HELIX 3 AA3 PRO A 354 LEU A 358 5 5 HELIX 4 AA4 THR A 414 THR A 420 1 7 HELIX 5 AA5 LEU A 432 TYR A 436 5 5 HELIX 6 AA6 ASN B 246 MET B 252 1 7 HELIX 7 AA7 GLN B 309 SER B 315 1 7 HELIX 8 AA8 PRO B 354 LEU B 358 5 5 HELIX 9 AA9 THR B 414 THR B 420 1 7 HELIX 10 AB1 LEU B 432 TYR B 436 5 5 HELIX 11 AB2 ASN Z 2 HIS Z 14 1 13 HELIX 12 AB3 ASN Z 19 CYS Z 34 1 16 SHEET 1 AA1 4 ILE A 242 PHE A 243 0 SHEET 2 AA1 4 LYS A 258 VAL A 263 -1 O THR A 260 N PHE A 243 SHEET 3 AA1 4 ARG A 301 THR A 307 -1 O LEU A 306 N VAL A 259 SHEET 4 AA1 4 GLN A 288 HIS A 292 -1 N GLN A 288 O THR A 305 SHEET 1 AA2 4 GLU A 283 VAL A 284 0 SHEET 2 AA2 4 GLN A 274 VAL A 279 -1 N TRP A 277 O VAL A 284 SHEET 3 AA2 4 PHE A 319 ASN A 324 -1 O LYS A 322 N SER A 276 SHEET 4 AA2 4 ILE A 332 ARG A 334 -1 O ARG A 334 N CYS A 321 SHEET 1 AA3 4 GLN A 347 LEU A 351 0 SHEET 2 AA3 4 ASP A 362 PHE A 372 -1 O THR A 366 N LEU A 351 SHEET 3 AA3 4 TYR A 404 LYS A 413 -1 O SER A 408 N CYS A 367 SHEET 4 AA3 4 TYR A 391 ASP A 393 -1 N LYS A 392 O ARG A 409 SHEET 1 AA4 4 GLN A 347 LEU A 351 0 SHEET 2 AA4 4 ASP A 362 PHE A 372 -1 O THR A 366 N LEU A 351 SHEET 3 AA4 4 TYR A 404 LYS A 413 -1 O SER A 408 N CYS A 367 SHEET 4 AA4 4 VAL A 397 LEU A 398 -1 N VAL A 397 O PHE A 405 SHEET 1 AA5 4 HIS A 386 GLU A 388 0 SHEET 2 AA5 4 SER A 378 SER A 383 -1 N TRP A 381 O GLU A 388 SHEET 3 AA5 4 PHE A 423 ARG A 428 -1 O ASN A 426 N GLU A 380 SHEET 4 AA5 4 LEU A 437 ILE A 441 -1 O LYS A 439 N CYS A 425 SHEET 1 AA6 4 SER B 239 PHE B 243 0 SHEET 2 AA6 4 LYS B 258 VAL B 266 -1 O VAL B 262 N PHE B 241 SHEET 3 AA6 4 THR B 299 PRO B 307 -1 O SER B 304 N CYS B 261 SHEET 4 AA6 4 GLN B 288 GLU B 294 -1 N HIS B 292 O ARG B 301 SHEET 1 AA7 4 VAL B 282 VAL B 284 0 SHEET 2 AA7 4 ILE B 275 VAL B 279 -1 N VAL B 279 O VAL B 282 SHEET 3 AA7 4 PHE B 319 VAL B 323 -1 O LYS B 322 N SER B 276 SHEET 4 AA7 4 ILE B 332 ILE B 336 -1 O ILE B 332 N VAL B 323 SHEET 1 AA8 4 GLN B 347 LEU B 351 0 SHEET 2 AA8 4 ASP B 362 PHE B 372 -1 O LEU B 368 N TYR B 349 SHEET 3 AA8 4 TYR B 404 LYS B 413 -1 O MET B 412 N VAL B 363 SHEET 4 AA8 4 TYR B 391 ASP B 393 -1 N LYS B 392 O LYS B 409 SHEET 1 AA9 4 GLN B 347 LEU B 351 0 SHEET 2 AA9 4 ASP B 362 PHE B 372 -1 O LEU B 368 N TYR B 349 SHEET 3 AA9 4 TYR B 404 LYS B 413 -1 O MET B 412 N VAL B 363 SHEET 4 AA9 4 VAL B 397 LEU B 398 -1 N VAL B 397 O LEU B 405 SHEET 1 AB1 4 HIS B 386 GLU B 388 0 SHEET 2 AB1 4 SER B 378 SER B 383 -1 N SER B 383 O HIS B 386 SHEET 3 AB1 4 PHE B 423 ARG B 428 -1 O ASN B 426 N GLU B 380 SHEET 4 AB1 4 LEU B 437 ILE B 441 -1 O LEU B 437 N VAL B 427 SSBOND 1 CYS A 261 CYS A 321 1555 1555 2.03 SSBOND 2 CYS A 367 CYS A 425 1555 1555 2.04 SSBOND 3 CYS B 261 CYS B 321 1555 1555 2.04 SSBOND 4 CYS B 367 CYS B 425 1555 1555 2.04 SSBOND 5 CYS Z 5 CYS Z 34 1555 1555 2.03 LINK ND2 ASN B 297 C1 NAG D 1 1555 1555 1.45 LINK O4 NAG C 1 C1 BMA C 2 1555 1555 1.44 LINK O3 BMA C 2 C1 MAN C 3 1555 1555 1.44 LINK O6 BMA C 2 C1 MAN C 5 1555 1555 1.44 LINK O2 MAN C 3 C1 NAG C 4 1555 1555 1.44 LINK O2 MAN C 5 C1 NAG C 6 1555 1555 1.44 LINK O4 NAG D 1 C1 NAG D 2 1555 1555 1.44 LINK O6 NAG D 1 C1 FUC D 8 1555 1555 1.43 LINK O4 NAG D 2 C1 BMA D 3 1555 1555 1.43 LINK O3 BMA D 3 C1 MAN D 4 1555 1555 1.44 LINK O6 BMA D 3 C1 MAN D 6 1555 1555 1.44 LINK O2 MAN D 4 C1 NAG D 5 1555 1555 1.43 LINK O2 MAN D 6 C1 NAG D 7 1555 1555 1.44 CISPEP 1 ASN A 373 PRO A 374 0 -2.47 CISPEP 2 ASN B 373 PRO B 374 0 2.23 CRYST1 101.490 101.490 135.070 90.00 90.00 90.00 P 43 21 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.009853 0.000000 0.000000 0.00000 SCALE2 0.000000 0.009853 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007404 0.00000