HEADER HYDROLASE 21-DEC-16 5UC0 TITLE CRYSTAL STRUCTURE OF BETA-BARREL-LIKE, UNCHARACTERIZED PROTEIN OF TITLE 2 COG5400 FROM BRUCELLA ABORTUS COMPND MOL_ID: 1; COMPND 2 MOLECULE: UNCHARACTERIZED PROTEIN COG5400; COMPND 3 CHAIN: A, B; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: BRUCELLA ABORTUS (STRAIN 2308); SOURCE 3 ORGANISM_TAXID: 359391; SOURCE 4 STRAIN: 2308; SOURCE 5 GENE: BAB1_1612; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21DE3 GOLD; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PMCSG73 KEYWDS BETA BARREL-LIKE, BETA-STRUCTURE, CHICAGO CENTER FOR FUNCTIONAL KEYWDS 2 ANNOTATION, MIDWEST CENTER FOR STRUCTURAL GENOMICS, MCSG, PSI- KEYWDS 3 BIOLOGY, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR Y.KIM,L.BIGELOW,M.ENDRES,G.BABNIGG,S.CROSSON,A.JOACHIMIAK,MIDWEST AUTHOR 2 CENTER FOR STRUCTURAL GENOMICS (MCSG) REVDAT 8 20-NOV-24 5UC0 1 REMARK REVDAT 7 01-JAN-20 5UC0 1 REMARK REVDAT 6 19-DEC-18 5UC0 1 JRNL REVDAT 5 24-JAN-18 5UC0 1 AUTHOR JRNL REVDAT 4 01-NOV-17 5UC0 1 REMARK REVDAT 3 20-SEP-17 5UC0 1 REMARK REVDAT 2 15-FEB-17 5UC0 1 TITLE REMARK ATOM REVDAT 1 08-FEB-17 5UC0 0 JRNL AUTH J.HERROU,J.W.WILLETT,A.FIEBIG,L.M.VARESIO,D.M.CZYZ, JRNL AUTH 2 J.X.CHENG,E.ULTEE,A.BRIEGEL,L.BIGELOW,G.BABNIGG,Y.KIM, JRNL AUTH 3 S.CROSSON JRNL TITL PERIPLASMIC PROTEIN EIPA DETERMINES ENVELOPE STRESS JRNL TITL 2 RESISTANCE AND VIRULENCE IN BRUCELLA ABORTUS. JRNL REF MOL. MICROBIOL. 2018 JRNL REFN ESSN 1365-2958 JRNL PMID 30536925 JRNL DOI 10.1111/MMI.14178 REMARK 2 REMARK 2 RESOLUTION. 1.73 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (DEV_2411: ???) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.73 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 32.64 REMARK 3 MIN(FOBS/SIGMA_FOBS) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 3 NUMBER OF REFLECTIONS : 49069 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.179 REMARK 3 R VALUE (WORKING SET) : 0.176 REMARK 3 FREE R VALUE : 0.208 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.170 REMARK 3 FREE R VALUE TEST SET COUNT : 2539 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 25.8817 - 4.5201 0.93 2630 156 0.1282 0.1467 REMARK 3 2 4.5201 - 3.5908 0.95 2625 145 0.1054 0.1725 REMARK 3 3 3.5908 - 3.1378 0.94 2572 176 0.1432 0.1887 REMARK 3 4 3.1378 - 2.8513 0.95 2593 141 0.1805 0.2633 REMARK 3 5 2.8513 - 2.6471 0.94 2567 150 0.1993 0.2031 REMARK 3 6 2.6471 - 2.4912 0.95 2618 133 0.2079 0.2950 REMARK 3 7 2.4912 - 2.3665 0.95 2592 131 0.2184 0.2573 REMARK 3 8 2.3665 - 2.2636 0.96 2614 117 0.2242 0.2373 REMARK 3 9 2.2636 - 2.1765 0.94 2567 156 0.2233 0.2361 REMARK 3 10 2.1765 - 2.1014 0.95 2583 140 0.2315 0.2509 REMARK 3 11 2.1014 - 2.0357 0.95 2567 125 0.2464 0.2627 REMARK 3 12 2.0357 - 1.9775 0.94 2570 158 0.2318 0.2389 REMARK 3 13 1.9775 - 1.9255 0.95 2580 117 0.2348 0.2454 REMARK 3 14 1.9255 - 1.8785 0.95 2583 130 0.2495 0.2189 REMARK 3 15 1.8785 - 1.8358 0.94 2548 162 0.2403 0.3023 REMARK 3 16 1.8358 - 1.7968 0.95 2578 137 0.2494 0.2042 REMARK 3 17 1.7968 - 1.7608 0.95 2561 126 0.2525 0.2620 REMARK 3 18 1.7608 - 1.7276 0.94 2562 139 0.2537 0.2720 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : NULL REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 23.190 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 23.12 REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.007 2531 REMARK 3 ANGLE : 0.876 3422 REMARK 3 CHIRALITY : 0.053 354 REMARK 3 PLANARITY : 0.005 441 REMARK 3 DIHEDRAL : 17.629 878 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 10 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 38 THROUGH 114 ) REMARK 3 ORIGIN FOR THE GROUP (A): 42.1995 11.6205 39.6061 REMARK 3 T TENSOR REMARK 3 T11: 0.2476 T22: 0.1770 REMARK 3 T33: 0.0309 T12: -0.0070 REMARK 3 T13: -0.0513 T23: -0.0855 REMARK 3 L TENSOR REMARK 3 L11: 0.8884 L22: 1.4652 REMARK 3 L33: 0.6637 L12: 0.6517 REMARK 3 L13: -0.1687 L23: 0.3720 REMARK 3 S TENSOR REMARK 3 S11: 0.0310 S12: -0.0266 S13: 0.0407 REMARK 3 S21: -0.0214 S22: -0.1038 S23: 0.2293 REMARK 3 S31: 0.0955 S32: -0.0698 S33: 0.1658 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 115 THROUGH 124 ) REMARK 3 ORIGIN FOR THE GROUP (A): 55.1794 19.3553 47.7941 REMARK 3 T TENSOR REMARK 3 T11: 0.3649 T22: 0.4629 REMARK 3 T33: 0.1457 T12: 0.1336 REMARK 3 T13: -0.0184 T23: -0.0778 REMARK 3 L TENSOR REMARK 3 L11: 2.6506 L22: 2.1888 REMARK 3 L33: 2.9783 L12: 1.7301 REMARK 3 L13: 2.5358 L23: 1.3609 REMARK 3 S TENSOR REMARK 3 S11: 0.0117 S12: 0.0397 S13: -0.2299 REMARK 3 S21: 0.3395 S22: 0.1634 S23: -0.2789 REMARK 3 S31: 0.6235 S32: 0.5908 S33: -0.1294 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 125 THROUGH 174 ) REMARK 3 ORIGIN FOR THE GROUP (A): 39.9249 19.1229 37.6274 REMARK 3 T TENSOR REMARK 3 T11: 0.2374 T22: 0.1632 REMARK 3 T33: 0.0259 T12: 0.0131 REMARK 3 T13: -0.0595 T23: -0.0452 REMARK 3 L TENSOR REMARK 3 L11: 1.4000 L22: 1.1121 REMARK 3 L33: 3.0097 L12: 0.0337 REMARK 3 L13: -0.4623 L23: -0.0065 REMARK 3 S TENSOR REMARK 3 S11: 0.0079 S12: 0.1763 S13: -0.0127 REMARK 3 S21: -0.1687 S22: 0.0043 S23: 0.1070 REMARK 3 S31: -0.0524 S32: -0.0199 S33: 0.0720 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 175 THROUGH 198 ) REMARK 3 ORIGIN FOR THE GROUP (A): 49.9407 23.2796 39.4074 REMARK 3 T TENSOR REMARK 3 T11: 0.2772 T22: 0.2316 REMARK 3 T33: 0.0444 T12: -0.0203 REMARK 3 T13: 0.0067 T23: -0.0160 REMARK 3 L TENSOR REMARK 3 L11: 0.5975 L22: 0.8697 REMARK 3 L33: 0.1512 L12: -0.3036 REMARK 3 L13: -0.1605 L23: 0.3595 REMARK 3 S TENSOR REMARK 3 S11: -0.0142 S12: -0.1102 S13: 0.0320 REMARK 3 S21: 0.0230 S22: -0.0232 S23: -0.0247 REMARK 3 S31: -0.1524 S32: -0.1414 S33: 0.0265 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 38 THROUGH 58 ) REMARK 3 ORIGIN FOR THE GROUP (A): 23.0664 30.5810 64.6637 REMARK 3 T TENSOR REMARK 3 T11: 0.1565 T22: 0.2555 REMARK 3 T33: 0.1682 T12: 0.0900 REMARK 3 T13: 0.0367 T23: -0.0146 REMARK 3 L TENSOR REMARK 3 L11: 6.4821 L22: 3.1356 REMARK 3 L33: 3.4343 L12: 2.1582 REMARK 3 L13: -1.1027 L23: -0.5745 REMARK 3 S TENSOR REMARK 3 S11: -0.0670 S12: 0.3394 S13: -0.3809 REMARK 3 S21: -0.2312 S22: -0.0377 S23: 0.3289 REMARK 3 S31: -0.0491 S32: -0.4099 S33: 0.0915 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 59 THROUGH 84 ) REMARK 3 ORIGIN FOR THE GROUP (A): 29.0924 25.1056 64.7099 REMARK 3 T TENSOR REMARK 3 T11: 0.1862 T22: 0.2297 REMARK 3 T33: 0.1083 T12: 0.0048 REMARK 3 T13: 0.0585 T23: 0.0110 REMARK 3 L TENSOR REMARK 3 L11: 2.8152 L22: 3.2608 REMARK 3 L33: 2.3865 L12: 0.8452 REMARK 3 L13: 0.1523 L23: 0.7687 REMARK 3 S TENSOR REMARK 3 S11: -0.1609 S12: 0.0971 S13: -0.4132 REMARK 3 S21: -0.2305 S22: -0.0692 S23: 0.1068 REMARK 3 S31: 0.1955 S32: -0.2541 S33: 0.2067 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 85 THROUGH 100 ) REMARK 3 ORIGIN FOR THE GROUP (A): 43.4615 37.7285 67.9858 REMARK 3 T TENSOR REMARK 3 T11: 0.2597 T22: 0.2495 REMARK 3 T33: 0.0745 T12: -0.0376 REMARK 3 T13: -0.0001 T23: -0.0461 REMARK 3 L TENSOR REMARK 3 L11: 4.2405 L22: 2.5069 REMARK 3 L33: 0.9019 L12: 1.4662 REMARK 3 L13: 1.8335 L23: 0.1660 REMARK 3 S TENSOR REMARK 3 S11: -0.2738 S12: 0.7037 S13: 0.0221 REMARK 3 S21: -0.3698 S22: 0.1497 S23: -0.2100 REMARK 3 S31: -0.3086 S32: 0.0778 S33: 0.1362 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 101 THROUGH 114 ) REMARK 3 ORIGIN FOR THE GROUP (A): 34.3040 33.9759 75.8077 REMARK 3 T TENSOR REMARK 3 T11: 0.2525 T22: 0.2784 REMARK 3 T33: 0.0566 T12: 0.0328 REMARK 3 T13: 0.0412 T23: -0.0180 REMARK 3 L TENSOR REMARK 3 L11: 0.7559 L22: 1.0113 REMARK 3 L33: 1.1633 L12: -0.0380 REMARK 3 L13: 0.4739 L23: 0.7662 REMARK 3 S TENSOR REMARK 3 S11: -0.0808 S12: -0.2687 S13: 0.0097 REMARK 3 S21: 0.2819 S22: 0.0334 S23: 0.1237 REMARK 3 S31: 0.0138 S32: -0.1174 S33: 0.0692 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 115 THROUGH 124 ) REMARK 3 ORIGIN FOR THE GROUP (A): 44.6597 39.1999 58.5861 REMARK 3 T TENSOR REMARK 3 T11: 0.9626 T22: 0.7480 REMARK 3 T33: 0.5776 T12: -0.1178 REMARK 3 T13: 0.1105 T23: 0.2129 REMARK 3 L TENSOR REMARK 3 L11: 0.0022 L22: 0.0251 REMARK 3 L33: 0.0227 L12: 0.0004 REMARK 3 L13: -0.0036 L23: -0.0214 REMARK 3 S TENSOR REMARK 3 S11: 0.6095 S12: 1.3606 S13: 0.7612 REMARK 3 S21: -1.4677 S22: -0.3206 S23: -0.0771 REMARK 3 S31: -0.4119 S32: -0.2982 S33: -0.2918 REMARK 3 TLS GROUP : 10 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 125 THROUGH 198 ) REMARK 3 ORIGIN FOR THE GROUP (A): 39.1574 27.1207 68.9103 REMARK 3 T TENSOR REMARK 3 T11: 0.2275 T22: 0.2624 REMARK 3 T33: -0.0131 T12: 0.0525 REMARK 3 T13: 0.0690 T23: 0.0214 REMARK 3 L TENSOR REMARK 3 L11: 0.6830 L22: 0.7917 REMARK 3 L33: 0.6905 L12: 0.1898 REMARK 3 L13: 0.2913 L23: 0.3436 REMARK 3 S TENSOR REMARK 3 S11: -0.0161 S12: -0.0948 S13: -0.0462 REMARK 3 S21: 0.1163 S22: 0.0000 S23: 0.0498 REMARK 3 S31: 0.0118 S32: 0.0087 S33: 0.0067 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5UC0 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 23-DEC-16. REMARK 100 THE DEPOSITION ID IS D_1000225623. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 05-JUN-15 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 19-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9796 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-3000 REMARK 200 DATA SCALING SOFTWARE : HKL-3000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 49076 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.730 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 200 DATA REDUNDANCY : 7.400 REMARK 200 R MERGE (I) : 0.08900 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 24.9000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.73 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.76 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.1 REMARK 200 DATA REDUNDANCY IN SHELL : 7.30 REMARK 200 R MERGE FOR SHELL (I) : 0.76100 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.200 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: HKL-3000 REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 64.15 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.43 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2 M AMMONIUM SULFATE, 0.1 M SODIUM REMARK 280 CACODYLATE PH 6.5, 30 %(W/V) PEG 8000, VAPOR DIFFUSION, SITTING REMARK 280 DROP, TEMPERATURE 289K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 63 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z REMARK 290 3555 -X+Y,-X,Z REMARK 290 4555 -X,-Y,Z+1/2 REMARK 290 5555 Y,-X+Y,Z+1/2 REMARK 290 6555 X-Y,X,Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 32.15400 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 32.15400 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 32.15400 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: BIOLOGICAL ASSEMBLIES ARE DIMER AND HEXAMER BY SIZE REMARK 300 EXCLUSION CHROMATOGRAPHY REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: HEXAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: HEXAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 15150 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 35560 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -288.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -0.500000 -0.866025 0.000000 113.07500 REMARK 350 BIOMT2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 3 -0.500000 0.866025 0.000000 56.53750 REMARK 350 BIOMT2 3 -0.866025 -0.500000 0.000000 97.92582 REMARK 350 BIOMT3 3 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 457 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 463 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 SER A 36 REMARK 465 ASN A 37 REMARK 465 SER B 36 REMARK 465 ASN B 37 REMARK 465 TRP B 118 REMARK 465 ASP B 119 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 319 O HOH A 341 1.99 REMARK 500 O HOH B 328 O HOH B 339 2.06 REMARK 500 O HOH B 310 O HOH B 375 2.09 REMARK 500 O1 SO4 B 201 O HOH B 301 2.09 REMARK 500 O HOH B 409 O HOH B 430 2.10 REMARK 500 O HOH B 450 O HOH B 453 2.12 REMARK 500 O HOH A 304 O HOH A 416 2.13 REMARK 500 O HOH B 311 O HOH B 440 2.13 REMARK 500 O HOH B 347 O HOH B 407 2.13 REMARK 500 O HOH B 343 O HOH B 396 2.14 REMARK 500 O HOH A 368 O HOH A 422 2.14 REMARK 500 O HOH A 433 O HOH A 435 2.15 REMARK 500 O HOH A 382 O HOH A 423 2.16 REMARK 500 O4 SO4 B 201 O HOH B 302 2.16 REMARK 500 O HOH A 362 O HOH A 365 2.16 REMARK 500 O HOH A 361 O HOH A 415 2.17 REMARK 500 O HOH B 301 O HOH B 395 2.17 REMARK 500 O GLU A 44 O HOH A 301 2.18 REMARK 500 O1 SO4 B 201 O HOH B 302 2.18 REMARK 500 O PHE A 88 O HOH A 302 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 400 O HOH B 343 5554 2.08 REMARK 500 O HOH B 443 O HOH B 443 2655 2.14 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLU A 165 -122.96 49.95 REMARK 500 ASN B 39 -30.43 -138.90 REMARK 500 PHE B 88 31.22 -99.19 REMARK 500 GLU B 165 -126.82 53.56 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 462 DISTANCE = 6.22 ANGSTROMS REMARK 525 HOH A 463 DISTANCE = 6.35 ANGSTROMS REMARK 525 HOH A 464 DISTANCE = 6.77 ANGSTROMS REMARK 525 HOH B 458 DISTANCE = 7.36 ANGSTROMS REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 202 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CL A 203 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CL A 204 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue 1PE A 205 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 B 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 B 202 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue 1PE B 203 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: MCSG-APC114217 RELATED DB: TARGETTRACK DBREF 5UC0 A 39 198 UNP Q2YQA6 Q2YQA6_BRUA2 39 198 DBREF 5UC0 B 39 198 UNP Q2YQA6 Q2YQA6_BRUA2 39 198 SEQADV 5UC0 SER A 36 UNP Q2YQA6 EXPRESSION TAG SEQADV 5UC0 ASN A 37 UNP Q2YQA6 EXPRESSION TAG SEQADV 5UC0 ALA A 38 UNP Q2YQA6 EXPRESSION TAG SEQADV 5UC0 SER B 36 UNP Q2YQA6 EXPRESSION TAG SEQADV 5UC0 ASN B 37 UNP Q2YQA6 EXPRESSION TAG SEQADV 5UC0 ALA B 38 UNP Q2YQA6 EXPRESSION TAG SEQRES 1 A 163 SER ASN ALA ASN THR TYR THR ALA GLU GLU VAL VAL GLU SEQRES 2 A 163 SER GLY HIS ARG PHE PHE GLY SER THR SER GLY GLY ILE SEQRES 3 A 163 ALA SER ALA VAL GLU LYS ALA PHE GLN SER PHE GLY LEU SEQRES 4 A 163 PRO ASN GLY TYR ILE LEU GLY GLU GLU GLY SER GLY ALA SEQRES 5 A 163 PHE ILE GLY GLY LEU THR TYR GLY GLU GLY THR LEU TYR SEQRES 6 A 163 THR LYS ASN ALA GLY ASP HIS LYS THR PHE TRP GLN GLY SEQRES 7 A 163 PRO SER LEU GLY TRP ASP PHE GLY GLY GLN GLY SER ARG SEQRES 8 A 163 VAL MSE MSE LEU VAL TYR ASN LEU ASP ASP ILE GLN HIS SEQRES 9 A 163 LEU TYR GLY ARG TYR ALA GLY VAL ALA GLY SER ALA TYR SEQRES 10 A 163 VAL ILE ALA GLY VAL GLY PHE ASN VAL LEU LYS ARG GLU SEQRES 11 A 163 ASN ILE VAL LEU VAL PRO ILE ARG THR GLY ILE GLY ALA SEQRES 12 A 163 ARG LEU GLY VAL ASN ILE GLY TYR LEU LYS LEU SER ALA SEQRES 13 A 163 ALA PRO THR TRP ASN PRO PHE SEQRES 1 B 163 SER ASN ALA ASN THR TYR THR ALA GLU GLU VAL VAL GLU SEQRES 2 B 163 SER GLY HIS ARG PHE PHE GLY SER THR SER GLY GLY ILE SEQRES 3 B 163 ALA SER ALA VAL GLU LYS ALA PHE GLN SER PHE GLY LEU SEQRES 4 B 163 PRO ASN GLY TYR ILE LEU GLY GLU GLU GLY SER GLY ALA SEQRES 5 B 163 PHE ILE GLY GLY LEU THR TYR GLY GLU GLY THR LEU TYR SEQRES 6 B 163 THR LYS ASN ALA GLY ASP HIS LYS THR PHE TRP GLN GLY SEQRES 7 B 163 PRO SER LEU GLY TRP ASP PHE GLY GLY GLN GLY SER ARG SEQRES 8 B 163 VAL MSE MSE LEU VAL TYR ASN LEU ASP ASP ILE GLN HIS SEQRES 9 B 163 LEU TYR GLY ARG TYR ALA GLY VAL ALA GLY SER ALA TYR SEQRES 10 B 163 VAL ILE ALA GLY VAL GLY PHE ASN VAL LEU LYS ARG GLU SEQRES 11 B 163 ASN ILE VAL LEU VAL PRO ILE ARG THR GLY ILE GLY ALA SEQRES 12 B 163 ARG LEU GLY VAL ASN ILE GLY TYR LEU LYS LEU SER ALA SEQRES 13 B 163 ALA PRO THR TRP ASN PRO PHE MODRES 5UC0 MSE A 128 MET MODIFIED RESIDUE MODRES 5UC0 MSE A 129 MET MODIFIED RESIDUE MODRES 5UC0 MSE B 128 MET MODIFIED RESIDUE MODRES 5UC0 MSE B 129 MET MODIFIED RESIDUE HET MSE A 128 8 HET MSE A 129 8 HET MSE B 128 8 HET MSE B 129 8 HET SO4 A 201 5 HET SO4 A 202 5 HET CL A 203 1 HET CL A 204 1 HET 1PE A 205 16 HET SO4 B 201 5 HET SO4 B 202 5 HET 1PE B 203 16 HETNAM MSE SELENOMETHIONINE HETNAM SO4 SULFATE ION HETNAM CL CHLORIDE ION HETNAM 1PE PENTAETHYLENE GLYCOL HETSYN 1PE PEG400 FORMUL 1 MSE 4(C5 H11 N O2 SE) FORMUL 3 SO4 4(O4 S 2-) FORMUL 5 CL 2(CL 1-) FORMUL 7 1PE 2(C10 H22 O6) FORMUL 11 HOH *322(H2 O) HELIX 1 AA1 THR A 42 GLY A 55 1 14 HELIX 2 AA2 SER A 58 GLY A 73 1 16 HELIX 3 AA3 ASP A 136 TYR A 141 5 6 HELIX 4 AA4 GLY A 175 GLY A 181 1 7 HELIX 5 AA5 VAL A 182 ILE A 184 5 3 HELIX 6 AA6 THR B 42 GLY B 55 1 14 HELIX 7 AA7 SER B 58 GLY B 73 1 16 HELIX 8 AA8 ASP B 136 LEU B 140 5 5 HELIX 9 AA9 GLY B 175 VAL B 182 1 8 SHEET 1 AA122 ILE A 167 THR A 174 0 SHEET 2 AA122 SER A 125 TYR A 132 -1 N MSE A 128 O ILE A 172 SHEET 3 AA122 GLY A 77 GLY A 84 -1 N GLY A 77 O VAL A 131 SHEET 4 AA122 LEU A 92 TYR A 100 -1 O TYR A 100 N TYR A 78 SHEET 5 AA122 HIS A 107 PRO A 114 -1 O HIS A 107 N LEU A 99 SHEET 6 AA122 TYR A 186 SER A 190 -1 O SER A 190 N PHE A 110 SHEET 7 AA122 GLY A 142 GLY A 146 -1 N TYR A 144 O LEU A 187 SHEET 8 AA122 LEU A 162 ARG A 164 -1 O LYS A 163 N ALA A 145 SHEET 9 AA122 ILE A 167 THR A 174 -1 O LEU A 169 N LEU A 162 SHEET 10 AA122 VAL A 157 PHE A 159 -1 N GLY A 158 O ARG A 173 SHEET 11 AA122 TYR A 152 ILE A 154 -1 N TYR A 152 O PHE A 159 SHEET 12 AA122 TYR B 152 ILE B 154 -1 O VAL B 153 N VAL A 153 SHEET 13 AA122 VAL B 157 PHE B 159 -1 O VAL B 157 N ILE B 154 SHEET 14 AA122 ILE B 167 THR B 174 -1 O ARG B 173 N GLY B 158 SHEET 15 AA122 LEU B 162 ARG B 164 -1 N LEU B 162 O LEU B 169 SHEET 16 AA122 GLY B 142 GLY B 146 -1 N ALA B 145 O LYS B 163 SHEET 17 AA122 TYR B 186 SER B 190 -1 O LEU B 187 N TYR B 144 SHEET 18 AA122 HIS B 107 PRO B 114 -1 N GLN B 112 O LYS B 188 SHEET 19 AA122 LEU B 92 TYR B 100 -1 N GLY B 95 O TRP B 111 SHEET 20 AA122 GLY B 77 GLY B 84 -1 N TYR B 78 O TYR B 100 SHEET 21 AA122 SER B 125 TYR B 132 -1 O VAL B 131 N GLY B 77 SHEET 22 AA122 ILE B 167 THR B 174 -1 O ILE B 172 N MSE B 128 LINK C VAL A 127 N MSE A 128 1555 1555 1.33 LINK C MSE A 128 N MSE A 129 1555 1555 1.34 LINK C MSE A 129 N LEU A 130 1555 1555 1.33 LINK C AVAL B 127 N MSE B 128 1555 1555 1.33 LINK C BVAL B 127 N MSE B 128 1555 1555 1.33 LINK C MSE B 128 N MSE B 129 1555 1555 1.33 LINK C MSE B 129 N LEU B 130 1555 1555 1.33 SITE 1 AC1 5 GLY A 142 ARG A 143 ARG A 164 HOH A 342 SITE 2 AC1 5 HOH A 347 SITE 1 AC2 4 ARG A 143 THR A 194 ASN A 196 HOH A 330 SITE 1 AC3 2 ARG A 126 HOH A 429 SITE 1 AC4 2 ILE A 176 HOH B 406 SITE 1 AC5 7 GLU A 82 TYR A 94 PRO A 193 THR A 194 SITE 2 AC5 7 TRP A 195 HOH A 371 HOH A 373 SITE 1 AC6 6 GLY B 142 ARG B 143 ARG B 164 HOH B 301 SITE 2 AC6 6 HOH B 302 HOH B 342 SITE 1 AC7 3 ARG B 143 THR B 194 ASN B 196 SITE 1 AC8 4 GLU B 82 TYR B 94 THR B 194 TRP B 195 CRYST1 113.075 113.075 64.308 90.00 90.00 120.00 P 63 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.008844 0.005106 0.000000 0.00000 SCALE2 0.000000 0.010212 0.000000 0.00000 SCALE3 0.000000 0.000000 0.015550 0.00000