HEADER LYASE 22-DEC-16 5UCK TITLE CLASS II FRUCTOSE-1,6-BISPHOSPHATE ALDOLASE OF HELICOBACTER PYLORI TITLE 2 WITH CLEAVAGE PRODUCTS COMPND MOL_ID: 1; COMPND 2 MOLECULE: FRUCTOSE-BISPHOSPHATE ALDOLASE; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: FBPA,FRUCTOSE-1,6-BISPHOSPHATE ALDOLASE; COMPND 5 EC: 4.1.2.13; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HELICOBACTER PYLORI (STRAIN ATCC 700392 / SOURCE 3 26695); SOURCE 4 ORGANISM_TAXID: 85962; SOURCE 5 STRAIN: ATCC 700392 / 26695; SOURCE 6 GENE: FBA, HP_0176; SOURCE 7 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 8 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS GLYCOLYSIS, METALLOENZYME, LYASE EXPDTA X-RAY DIFFRACTION AUTHOR B.JACQUES,J.SYGUSCH REVDAT 4 04-OCT-23 5UCK 1 LINK REVDAT 3 08-JAN-20 5UCK 1 REMARK REVDAT 2 30-MAY-18 5UCK 1 JRNL REVDAT 1 11-APR-18 5UCK 0 JRNL AUTH B.JACQUES,M.COINCON,J.SYGUSCH JRNL TITL ACTIVE SITE REMODELING DURING THE CATALYTIC CYCLE IN JRNL TITL 2 METAL-DEPENDENT FRUCTOSE-1,6-BISPHOSPHATE ALDOLASES. JRNL REF J. BIOL. CHEM. V. 293 7737 2018 JRNL REFN ESSN 1083-351X JRNL PMID 29593097 JRNL DOI 10.1074/JBC.RA117.001098 REMARK 2 REMARK 2 RESOLUTION. 1.78 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (DEV_2481) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.78 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 45.19 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 0.030 REMARK 3 COMPLETENESS FOR RANGE (%) : 85.3 REMARK 3 NUMBER OF REFLECTIONS : 47109 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.193 REMARK 3 R VALUE (WORKING SET) : 0.191 REMARK 3 FREE R VALUE : 0.232 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.850 REMARK 3 FREE R VALUE TEST SET COUNT : 2284 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 45.2062 - 4.4887 0.99 3248 162 0.1563 0.1824 REMARK 3 2 4.4887 - 3.5633 0.97 3172 170 0.1493 0.1718 REMARK 3 3 3.5633 - 3.1130 0.97 3210 155 0.1676 0.2055 REMARK 3 4 3.1130 - 2.8284 0.96 3114 160 0.1936 0.2264 REMARK 3 5 2.8284 - 2.6257 0.94 3078 160 0.1877 0.2570 REMARK 3 6 2.6257 - 2.4709 0.93 3058 154 0.1989 0.2563 REMARK 3 7 2.4709 - 2.3472 0.93 3089 150 0.1945 0.2732 REMARK 3 8 2.3472 - 2.2450 0.89 2910 153 0.1908 0.2181 REMARK 3 9 2.2450 - 2.1586 0.89 2892 151 0.1956 0.2465 REMARK 3 10 2.1586 - 2.0841 0.87 2852 145 0.2156 0.2596 REMARK 3 11 2.0841 - 2.0189 0.81 2697 130 0.2488 0.3177 REMARK 3 12 2.0189 - 1.9612 0.80 2623 141 0.2613 0.3093 REMARK 3 13 1.9612 - 1.9096 0.74 2443 134 0.2963 0.3500 REMARK 3 14 1.9096 - 1.8630 0.71 2337 101 0.3113 0.3427 REMARK 3 15 1.8630 - 1.8206 0.70 2303 128 0.3106 0.3539 REMARK 3 16 1.8206 - 1.7819 0.55 1799 90 0.3210 0.4175 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.240 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 29.790 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 19.00 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 31.48 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.004 4703 REMARK 3 ANGLE : 0.710 6333 REMARK 3 CHIRALITY : 0.042 694 REMARK 3 PLANARITY : 0.003 823 REMARK 3 DIHEDRAL : 12.405 2845 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 6 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 1 THROUGH 15 ) REMARK 3 ORIGIN FOR THE GROUP (A): 1.9881 19.4173 -14.4275 REMARK 3 T TENSOR REMARK 3 T11: 0.1298 T22: 0.2837 REMARK 3 T33: 0.2509 T12: 0.0199 REMARK 3 T13: -0.0228 T23: -0.0877 REMARK 3 L TENSOR REMARK 3 L11: 0.0039 L22: 0.0037 REMARK 3 L33: 0.0080 L12: -0.0043 REMARK 3 L13: 0.0012 L23: -0.0041 REMARK 3 S TENSOR REMARK 3 S11: 0.0342 S12: -0.0455 S13: -0.0220 REMARK 3 S21: 0.0311 S22: 0.0095 S23: -0.0111 REMARK 3 S31: -0.0372 S32: 0.0382 S33: -0.0000 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 16 THROUGH 184 ) REMARK 3 ORIGIN FOR THE GROUP (A): -9.4040 22.4090 -20.8925 REMARK 3 T TENSOR REMARK 3 T11: 0.1434 T22: 0.2335 REMARK 3 T33: 0.2237 T12: 0.0172 REMARK 3 T13: -0.0014 T23: -0.0712 REMARK 3 L TENSOR REMARK 3 L11: 0.0454 L22: 0.1026 REMARK 3 L33: 0.1023 L12: 0.0421 REMARK 3 L13: 0.0466 L23: 0.0344 REMARK 3 S TENSOR REMARK 3 S11: -0.0215 S12: -0.1446 S13: 0.1094 REMARK 3 S21: -0.0579 S22: 0.0415 S23: 0.0005 REMARK 3 S31: -0.0416 S32: 0.0202 S33: -0.0000 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 185 THROUGH 307 ) REMARK 3 ORIGIN FOR THE GROUP (A): -0.4138 30.5979 -33.2653 REMARK 3 T TENSOR REMARK 3 T11: 0.2658 T22: 0.1263 REMARK 3 T33: 0.1688 T12: -0.0821 REMARK 3 T13: 0.0113 T23: 0.0057 REMARK 3 L TENSOR REMARK 3 L11: 0.4617 L22: 0.0969 REMARK 3 L33: 0.0992 L12: -0.1111 REMARK 3 L13: -0.1297 L23: 0.0198 REMARK 3 S TENSOR REMARK 3 S11: -0.0679 S12: -0.0886 S13: 0.3293 REMARK 3 S21: -0.2614 S22: 0.2036 S23: -0.0344 REMARK 3 S31: -0.2162 S32: 0.1650 S33: 0.0634 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 1 THROUGH 15 ) REMARK 3 ORIGIN FOR THE GROUP (A): -18.9265 -12.8734 -45.2140 REMARK 3 T TENSOR REMARK 3 T11: 0.1293 T22: 0.2396 REMARK 3 T33: 0.3623 T12: -0.0188 REMARK 3 T13: 0.0268 T23: -0.0757 REMARK 3 L TENSOR REMARK 3 L11: 0.0039 L22: 0.0073 REMARK 3 L33: 0.0005 L12: 0.0014 REMARK 3 L13: -0.0003 L23: -0.0017 REMARK 3 S TENSOR REMARK 3 S11: 0.0250 S12: -0.0176 S13: -0.0141 REMARK 3 S21: -0.0309 S22: -0.0037 S23: 0.0296 REMARK 3 S31: 0.0219 S32: -0.0231 S33: 0.0000 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 16 THROUGH 216 ) REMARK 3 ORIGIN FOR THE GROUP (A): -8.8968 -6.8266 -51.1863 REMARK 3 T TENSOR REMARK 3 T11: 0.1296 T22: 0.1890 REMARK 3 T33: 0.2242 T12: 0.0021 REMARK 3 T13: 0.0150 T23: -0.0580 REMARK 3 L TENSOR REMARK 3 L11: 0.1042 L22: 0.1127 REMARK 3 L33: 0.1274 L12: -0.0049 REMARK 3 L13: 0.0908 L23: 0.0248 REMARK 3 S TENSOR REMARK 3 S11: -0.0040 S12: 0.1035 S13: -0.1049 REMARK 3 S21: -0.0433 S22: -0.0332 S23: 0.0044 REMARK 3 S31: -0.0372 S32: 0.0176 S33: -0.0012 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 217 THROUGH 307 ) REMARK 3 ORIGIN FOR THE GROUP (A): -17.4178 10.8000 -54.3046 REMARK 3 T TENSOR REMARK 3 T11: 0.2234 T22: 0.0697 REMARK 3 T33: 0.0569 T12: 0.0190 REMARK 3 T13: -0.0725 T23: 0.0775 REMARK 3 L TENSOR REMARK 3 L11: 0.2185 L22: 0.0649 REMARK 3 L33: 0.0640 L12: -0.0777 REMARK 3 L13: -0.0025 L23: -0.0087 REMARK 3 S TENSOR REMARK 3 S11: -0.0176 S12: 0.2373 S13: -0.1123 REMARK 3 S21: -0.1089 S22: -0.1034 S23: 0.0701 REMARK 3 S31: -0.2467 S32: -0.1230 S33: -0.1157 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5UCK COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 28-DEC-16. REMARK 100 THE DEPOSITION ID IS D_1000225650. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 30-JUL-14 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : NSLS REMARK 200 BEAMLINE : X29A REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.075 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 51940 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.782 REMARK 200 RESOLUTION RANGE LOW (A) : 45.190 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 85.3 REMARK 200 DATA REDUNDANCY : 1.900 REMARK 200 R MERGE (I) : 0.05860 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 9.0200 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.78 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.85 REMARK 200 COMPLETENESS FOR SHELL (%) : 60.8 REMARK 200 DATA REDUNDANCY IN SHELL : 1.60 REMARK 200 R MERGE FOR SHELL (I) : 0.44540 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.260 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 3C4U REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 44.32 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.21 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PEG 1000, PEG 8000, CALCIUM ACETATE, REMARK 280 TRIS-ACETIC ACID BUFFER, PH 8, VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 297K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 6260 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 21580 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -210.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 LEU A 138 REMARK 465 MET A 139 REMARK 465 GLY A 140 REMARK 465 ILE A 141 REMARK 465 GLU A 142 REMARK 465 ASP A 143 REMARK 465 ASN A 144 REMARK 465 ILE A 145 REMARK 465 SER A 146 REMARK 465 VAL A 147 REMARK 465 ASP A 148 REMARK 465 GLU A 149 REMARK 465 LYS A 150 REMARK 465 ASP A 151 REMARK 465 ALA A 152 REMARK 465 VAL A 153 REMARK 465 ARG B 137 REMARK 465 LEU B 138 REMARK 465 MET B 139 REMARK 465 GLY B 140 REMARK 465 ILE B 141 REMARK 465 GLU B 142 REMARK 465 ASP B 143 REMARK 465 ASN B 144 REMARK 465 ILE B 145 REMARK 465 SER B 146 REMARK 465 VAL B 147 REMARK 465 ASP B 148 REMARK 465 GLU B 149 REMARK 465 LYS B 150 REMARK 465 ASP B 151 REMARK 465 ALA B 152 REMARK 465 VAL B 153 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 HZ2 LYS A 122 O HOH A 512 1.60 REMARK 500 O HOH A 505 O HOH A 629 1.95 REMARK 500 O HOH B 507 O HOH B 530 1.98 REMARK 500 OE1 GLU B 115 O HOH B 501 1.99 REMARK 500 OD1 ASP B 170 O HOH B 502 2.02 REMARK 500 O HOH B 576 O HOH B 655 2.03 REMARK 500 O HOH B 638 O HOH B 650 2.05 REMARK 500 OE2 GLU A 111 O HOH A 501 2.07 REMARK 500 OE2 GLU B 88 O HOH B 503 2.09 REMARK 500 O HOH A 535 O HOH A 639 2.15 REMARK 500 O HOH A 601 O HOH A 658 2.16 REMARK 500 O GLU B 272 O HOH B 504 2.17 REMARK 500 O HOH B 598 O HOH B 671 2.18 REMARK 500 O HOH A 533 O HOH A 647 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LYS A 186 3.61 -66.96 REMARK 500 ILE A 215 70.49 52.73 REMARK 500 ASP A 255 -54.90 -144.54 REMARK 500 ASP B 255 -60.56 -140.62 REMARK 500 ASP B 273 100.80 -161.98 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH B 702 DISTANCE = 5.81 ANGSTROMS REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 402 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 83 NE2 REMARK 620 2 HIS A 210 ND1 85.4 REMARK 620 3 HOH A 513 O 77.4 144.5 REMARK 620 N 1 2 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 403 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 83 NE2 REMARK 620 2 HIS A 180 NE2 86.9 REMARK 620 3 HIS A 210 ND1 78.7 131.0 REMARK 620 4 13P A 404 O3 113.8 125.0 103.5 REMARK 620 5 G3H A 405 O1 92.8 76.1 150.2 53.8 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA B 401 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP B 82 OD1 REMARK 620 2 GLU B 132 OE2 140.7 REMARK 620 N 1 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN B 403 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS B 83 NE2 REMARK 620 2 HIS B 180 NE2 94.7 REMARK 620 3 HIS B 210 ND1 88.2 115.9 REMARK 620 4 13P B 404 O2 175.1 87.5 94.8 REMARK 620 5 13P B 404 O3 114.6 140.2 92.5 61.5 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN B 402 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU B 134 OE2 REMARK 620 2 HIS B 210 ND1 77.4 REMARK 620 3 HOH B 530 O 91.0 144.3 REMARK 620 N 1 2 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue NA A 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN A 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN A 403 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue 13P A 404 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue G3H A 405 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue NA B 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN B 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN B 403 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue 13P B 404 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue G3H B 405 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 5UCN RELATED DB: PDB REMARK 900 RELATED ID: 5UCP RELATED DB: PDB REMARK 900 RELATED ID: 5UCS RELATED DB: PDB REMARK 900 RELATED ID: 5UCZ RELATED DB: PDB REMARK 900 RELATED ID: 5UD0 RELATED DB: PDB REMARK 900 RELATED ID: 5UD1 RELATED DB: PDB REMARK 900 RELATED ID: 5UD2 RELATED DB: PDB REMARK 900 RELATED ID: 5UD3 RELATED DB: PDB REMARK 900 RELATED ID: 5UD4 RELATED DB: PDB DBREF 5UCK A 1 307 UNP P56109 ALF_HELPY 1 307 DBREF 5UCK B 1 307 UNP P56109 ALF_HELPY 1 307 SEQADV 5UCK ALA A 48 UNP P56109 THR 48 CONFLICT SEQADV 5UCK ILE A 67 UNP P56109 THR 67 CONFLICT SEQADV 5UCK ALA B 48 UNP P56109 THR 48 CONFLICT SEQADV 5UCK ILE B 67 UNP P56109 THR 67 CONFLICT SEQRES 1 A 307 MET LEU VAL LYS GLY ASN GLU ILE LEU LEU LYS ALA HIS SEQRES 2 A 307 LYS GLU GLY TYR GLY VAL GLY ALA PHE ASN PHE VAL ASN SEQRES 3 A 307 PHE GLU MET LEU ASN ALA ILE PHE GLU ALA GLY ASN GLU SEQRES 4 A 307 GLU ASN SER PRO LEU PHE ILE GLN ALA SER GLU GLY ALA SEQRES 5 A 307 ILE LYS TYR MET GLY ILE ASP MET ALA VAL GLY MET VAL SEQRES 6 A 307 LYS ILE MET CYS GLU ARG TYR PRO HIS ILE PRO VAL ALA SEQRES 7 A 307 LEU HIS LEU ASP HIS GLY THR THR PHE GLU SER CYS GLU SEQRES 8 A 307 LYS ALA VAL LYS ALA GLY PHE THR SER VAL MET ILE ASP SEQRES 9 A 307 ALA SER HIS HIS ALA PHE GLU GLU ASN LEU GLU LEU THR SEQRES 10 A 307 SER LYS VAL VAL LYS MET ALA HIS ASN ALA GLY VAL SER SEQRES 11 A 307 VAL GLU ALA GLU LEU GLY ARG LEU MET GLY ILE GLU ASP SEQRES 12 A 307 ASN ILE SER VAL ASP GLU LYS ASP ALA VAL LEU VAL ASN SEQRES 13 A 307 PRO LYS GLU ALA GLU GLN PHE VAL LYS GLU SER GLN VAL SEQRES 14 A 307 ASP TYR LEU ALA PRO ALA ILE GLY THR SER HIS GLY ALA SEQRES 15 A 307 PHE LYS PHE LYS GLY GLU PRO LYS LEU ASP PHE GLU ARG SEQRES 16 A 307 LEU GLN GLU VAL LYS ARG LEU THR ASN ILE PRO LEU VAL SEQRES 17 A 307 LEU HIS GLY ALA SER ALA ILE PRO ASP ASN VAL ARG LYS SEQRES 18 A 307 SER TYR LEU ASP ALA GLY GLY ASP LEU LYS GLY SER LYS SEQRES 19 A 307 GLY VAL PRO PHE GLU PHE LEU GLN GLU SER VAL LYS GLY SEQRES 20 A 307 GLY ILE ASN LYS VAL ASN THR ASP THR ASP LEU ARG ILE SEQRES 21 A 307 ALA PHE ILE ALA GLU VAL ARG LYS VAL ALA ASN GLU ASP SEQRES 22 A 307 LYS SER GLN PHE ASP LEU ARG LYS PHE PHE SER PRO ALA SEQRES 23 A 307 GLN LEU ALA LEU LYS ASN VAL VAL LYS GLU ARG MET LYS SEQRES 24 A 307 LEU LEU GLY SER ALA ASN LYS ILE SEQRES 1 B 307 MET LEU VAL LYS GLY ASN GLU ILE LEU LEU LYS ALA HIS SEQRES 2 B 307 LYS GLU GLY TYR GLY VAL GLY ALA PHE ASN PHE VAL ASN SEQRES 3 B 307 PHE GLU MET LEU ASN ALA ILE PHE GLU ALA GLY ASN GLU SEQRES 4 B 307 GLU ASN SER PRO LEU PHE ILE GLN ALA SER GLU GLY ALA SEQRES 5 B 307 ILE LYS TYR MET GLY ILE ASP MET ALA VAL GLY MET VAL SEQRES 6 B 307 LYS ILE MET CYS GLU ARG TYR PRO HIS ILE PRO VAL ALA SEQRES 7 B 307 LEU HIS LEU ASP HIS GLY THR THR PHE GLU SER CYS GLU SEQRES 8 B 307 LYS ALA VAL LYS ALA GLY PHE THR SER VAL MET ILE ASP SEQRES 9 B 307 ALA SER HIS HIS ALA PHE GLU GLU ASN LEU GLU LEU THR SEQRES 10 B 307 SER LYS VAL VAL LYS MET ALA HIS ASN ALA GLY VAL SER SEQRES 11 B 307 VAL GLU ALA GLU LEU GLY ARG LEU MET GLY ILE GLU ASP SEQRES 12 B 307 ASN ILE SER VAL ASP GLU LYS ASP ALA VAL LEU VAL ASN SEQRES 13 B 307 PRO LYS GLU ALA GLU GLN PHE VAL LYS GLU SER GLN VAL SEQRES 14 B 307 ASP TYR LEU ALA PRO ALA ILE GLY THR SER HIS GLY ALA SEQRES 15 B 307 PHE LYS PHE LYS GLY GLU PRO LYS LEU ASP PHE GLU ARG SEQRES 16 B 307 LEU GLN GLU VAL LYS ARG LEU THR ASN ILE PRO LEU VAL SEQRES 17 B 307 LEU HIS GLY ALA SER ALA ILE PRO ASP ASN VAL ARG LYS SEQRES 18 B 307 SER TYR LEU ASP ALA GLY GLY ASP LEU LYS GLY SER LYS SEQRES 19 B 307 GLY VAL PRO PHE GLU PHE LEU GLN GLU SER VAL LYS GLY SEQRES 20 B 307 GLY ILE ASN LYS VAL ASN THR ASP THR ASP LEU ARG ILE SEQRES 21 B 307 ALA PHE ILE ALA GLU VAL ARG LYS VAL ALA ASN GLU ASP SEQRES 22 B 307 LYS SER GLN PHE ASP LEU ARG LYS PHE PHE SER PRO ALA SEQRES 23 B 307 GLN LEU ALA LEU LYS ASN VAL VAL LYS GLU ARG MET LYS SEQRES 24 B 307 LEU LEU GLY SER ALA ASN LYS ILE HET NA A 401 1 HET ZN A 402 1 HET ZN A 403 1 HET 13P A 404 15 HET G3H A 405 30 HET NA B 401 1 HET ZN B 402 1 HET ZN B 403 1 HET 13P B 404 15 HET G3H B 405 30 HETNAM NA SODIUM ION HETNAM ZN ZINC ION HETNAM 13P 1,3-DIHYDROXYACETONEPHOSPHATE HETNAM G3H GLYCERALDEHYDE-3-PHOSPHATE FORMUL 3 NA 2(NA 1+) FORMUL 4 ZN 4(ZN 2+) FORMUL 6 13P 2(C3 H7 O6 P) FORMUL 7 G3H 2(C3 H7 O6 P) FORMUL 13 HOH *381(H2 O) HELIX 1 AA1 LYS A 4 GLY A 16 1 13 HELIX 2 AA2 ASN A 26 ASN A 41 1 16 HELIX 3 AA3 GLU A 50 GLY A 57 1 8 HELIX 4 AA4 GLY A 57 TYR A 72 1 16 HELIX 5 AA5 THR A 86 GLY A 97 1 12 HELIX 6 AA6 ALA A 109 ALA A 127 1 19 HELIX 7 AA7 ASN A 156 GLN A 168 1 13 HELIX 8 AA8 ASP A 192 ASN A 204 1 13 HELIX 9 AA9 PRO A 216 ALA A 226 1 11 HELIX 10 AB1 PRO A 237 GLY A 248 1 12 HELIX 11 AB2 ASP A 255 ASP A 273 1 19 HELIX 12 AB3 ASP A 278 GLY A 302 1 25 HELIX 13 AB4 LYS B 4 GLY B 16 1 13 HELIX 14 AB5 ASN B 26 ASN B 41 1 16 HELIX 15 AB6 GLU B 50 GLY B 57 1 8 HELIX 16 AB7 GLY B 57 TYR B 72 1 16 HELIX 17 AB8 THR B 86 GLY B 97 1 12 HELIX 18 AB9 ALA B 109 ALA B 127 1 19 HELIX 19 AC1 ASN B 156 GLN B 168 1 13 HELIX 20 AC2 ASP B 192 ASN B 204 1 13 HELIX 21 AC3 PRO B 216 ALA B 226 1 11 HELIX 22 AC4 PRO B 237 GLY B 248 1 12 HELIX 23 AC5 ASP B 255 ASP B 273 1 19 HELIX 24 AC6 ASP B 278 LEU B 301 1 24 SHEET 1 AA1 9 VAL A 19 ASN A 23 0 SHEET 2 AA1 9 LEU A 44 SER A 49 1 O GLN A 47 N PHE A 22 SHEET 3 AA1 9 VAL A 77 GLY A 84 1 O ALA A 78 N ILE A 46 SHEET 4 AA1 9 SER A 100 ILE A 103 1 O SER A 100 N LEU A 81 SHEET 5 AA1 9 SER A 130 LEU A 135 1 O GLU A 132 N VAL A 101 SHEET 6 AA1 9 TYR A 171 PRO A 174 1 O ALA A 173 N ALA A 133 SHEET 7 AA1 9 LEU A 207 LEU A 209 1 O VAL A 208 N LEU A 172 SHEET 8 AA1 9 ILE A 249 THR A 254 1 O LYS A 251 N LEU A 209 SHEET 9 AA1 9 VAL A 19 ASN A 23 1 N ALA A 21 O THR A 254 SHEET 1 AA2 9 VAL B 19 ASN B 23 0 SHEET 2 AA2 9 LEU B 44 SER B 49 1 O PHE B 45 N PHE B 22 SHEET 3 AA2 9 VAL B 77 GLY B 84 1 O ALA B 78 N ILE B 46 SHEET 4 AA2 9 SER B 100 ILE B 103 1 O SER B 100 N LEU B 81 SHEET 5 AA2 9 SER B 130 LEU B 135 1 O GLU B 132 N VAL B 101 SHEET 6 AA2 9 TYR B 171 PRO B 174 1 O ALA B 173 N ALA B 133 SHEET 7 AA2 9 LEU B 207 LEU B 209 1 O VAL B 208 N LEU B 172 SHEET 8 AA2 9 ILE B 249 THR B 254 1 O ASN B 250 N LEU B 207 SHEET 9 AA2 9 VAL B 19 ASN B 23 1 N VAL B 19 O ASN B 250 LINK OD1 ASP A 82 NA NA A 401 1555 1555 2.72 LINK NE2AHIS A 83 ZN A ZN A 402 1555 1555 2.59 LINK NE2BHIS A 83 ZN B ZN A 403 1555 1555 2.11 LINK NE2 HIS A 180 ZN B ZN A 403 1555 1555 2.04 LINK ND1AHIS A 210 ZN A ZN A 402 1555 1555 2.59 LINK ND1BHIS A 210 ZN B ZN A 403 1555 1555 2.29 LINK ZN A ZN A 402 O HOH A 513 1555 1555 2.36 LINK ZN B ZN A 403 O3 13P A 404 1555 1555 2.35 LINK ZN B ZN A 403 O1 BG3H A 405 1555 1555 2.70 LINK OD1 ASP B 82 NA NA B 401 1555 1555 2.69 LINK NE2BHIS B 83 ZN B ZN B 403 1555 1555 2.06 LINK OE2 GLU B 132 NA NA B 401 1555 1555 3.16 LINK OE2 GLU B 134 ZN A ZN B 402 1555 1555 2.37 LINK NE2 HIS B 180 ZN B ZN B 403 1555 1555 1.96 LINK ND1AHIS B 210 ZN A ZN B 402 1555 1555 2.70 LINK ND1BHIS B 210 ZN B ZN B 403 1555 1555 2.12 LINK ZN A ZN B 402 O HOH B 530 1555 1555 2.51 LINK ZN B ZN B 403 O2 13P B 404 1555 1555 2.67 LINK ZN B ZN B 403 O3 13P B 404 1555 1555 2.51 SITE 1 AC1 8 GLN A 47 HIS A 80 ASP A 82 MET A 102 SITE 2 AC1 8 GLU A 132 HIS A 210 LYS A 251 ASN A 253 SITE 1 AC2 5 HIS A 83 GLU A 134 HIS A 180 HIS A 210 SITE 2 AC2 5 HOH A 513 SITE 1 AC3 5 HIS A 83 HIS A 180 HIS A 210 13P A 404 SITE 2 AC3 5 G3H A 405 SITE 1 AC4 16 ASN A 23 ASP A 82 HIS A 83 HIS A 180 SITE 2 AC4 16 GLY A 181 LYS A 184 HIS A 210 GLY A 211 SITE 3 AC4 16 ALA A 212 SER A 213 ASN A 253 THR A 254 SITE 4 AC4 16 ASP A 255 THR A 256 ZN A 403 G3H A 405 SITE 1 AC5 12 SER A 49 ASP A 82 HIS A 83 HIS A 180 SITE 2 AC5 12 ASP A 255 ARG A 259 ZN A 403 13P A 404 SITE 3 AC5 12 HOH A 521 HOH A 610 HOH A 615 ARG B 280 SITE 1 AC6 7 HIS B 80 ASP B 82 MET B 102 GLU B 132 SITE 2 AC6 7 HIS B 210 LYS B 251 ASN B 253 SITE 1 AC7 6 HIS B 83 GLU B 134 HIS B 180 HIS B 210 SITE 2 AC7 6 ZN B 403 HOH B 530 SITE 1 AC8 6 HIS B 83 HIS B 180 HIS B 210 ZN B 402 SITE 2 AC8 6 13P B 404 G3H B 405 SITE 1 AC9 16 GLN B 47 ASP B 82 HIS B 83 HIS B 180 SITE 2 AC9 16 GLY B 181 LYS B 184 HIS B 210 GLY B 211 SITE 3 AC9 16 ALA B 212 SER B 213 ASN B 253 THR B 254 SITE 4 AC9 16 ASP B 255 THR B 256 ZN B 403 G3H B 405 SITE 1 AD1 12 ARG A 280 SER B 49 ASP B 82 HIS B 83 SITE 2 AD1 12 ASP B 255 ARG B 259 ZN B 403 13P B 404 SITE 3 AD1 12 HOH B 508 HOH B 509 HOH B 561 HOH B 603 CRYST1 39.384 62.843 64.754 82.23 75.97 74.40 P 1 2 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.025391 -0.007087 -0.005830 0.00000 SCALE2 0.000000 0.016521 -0.001242 0.00000 SCALE3 0.000000 0.000000 0.015963 0.00000