data_5UCL # _entry.id 5UCL # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.305 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code PDB 5UCL WWPDB D_1000225648 # _pdbx_database_PDB_obs_spr.id OBSLTE _pdbx_database_PDB_obs_spr.date 2019-03-06 _pdbx_database_PDB_obs_spr.pdb_id 6NJG _pdbx_database_PDB_obs_spr.replace_pdb_id 5UCL _pdbx_database_PDB_obs_spr.details ? # _pdbx_database_status.status_code OBS _pdbx_database_status.status_code_sf OBS _pdbx_database_status.status_code_mr ? _pdbx_database_status.entry_id 5UCL _pdbx_database_status.recvd_initial_deposition_date 2016-12-22 _pdbx_database_status.SG_entry N _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y # loop_ _audit_author.name _audit_author.pdbx_ordinal _audit_author.identifier_ORCID 'Manczyk, N.' 1 ? 'Sicheri, F.' 2 ? # _citation.abstract ? _citation.abstract_id_CAS ? _citation.book_id_ISBN ? _citation.book_publisher ? _citation.book_publisher_city ? _citation.book_title ? _citation.coordinate_linkage ? _citation.country US _citation.database_id_Medline ? _citation.details ? _citation.id primary _citation.journal_abbrev 'Protein Sci.' _citation.journal_id_ASTM PRCIEI _citation.journal_id_CSD 0795 _citation.journal_id_ISSN 1469-896X _citation.journal_full ? _citation.journal_issue ? _citation.journal_volume 26 _citation.language ? _citation.page_first 1060 _citation.page_last 1069 _citation.title ;Structural and functional characterization of a ubiquitin variant engineered for tight and specific binding to an alpha-helical ubiquitin interacting motif. ; _citation.year 2017 _citation.database_id_CSD ? _citation.pdbx_database_id_DOI 10.1002/pro.3155 _citation.pdbx_database_id_PubMed 28276594 _citation.unpublished_flag ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Manczyk, N.' 1 ? primary 'Yates, B.P.' 2 ? primary 'Veggiani, G.' 3 ? primary 'Ernst, A.' 4 ? primary 'Sicheri, F.' 5 ? primary 'Sidhu, S.S.' 6 ? # _cell.angle_alpha 90.00 _cell.angle_alpha_esd ? _cell.angle_beta 90.00 _cell.angle_beta_esd ? _cell.angle_gamma 90.00 _cell.angle_gamma_esd ? _cell.entry_id 5UCL _cell.details ? _cell.formula_units_Z ? _cell.length_a 44.613 _cell.length_a_esd ? _cell.length_b 44.613 _cell.length_b_esd ? _cell.length_c 104.343 _cell.length_c_esd ? _cell.volume ? _cell.volume_esd ? _cell.Z_PDB 8 _cell.reciprocal_angle_alpha ? _cell.reciprocal_angle_beta ? _cell.reciprocal_angle_gamma ? _cell.reciprocal_angle_alpha_esd ? _cell.reciprocal_angle_beta_esd ? _cell.reciprocal_angle_gamma_esd ? _cell.reciprocal_length_a ? _cell.reciprocal_length_b ? _cell.reciprocal_length_c ? _cell.reciprocal_length_a_esd ? _cell.reciprocal_length_b_esd ? _cell.reciprocal_length_c_esd ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 5UCL _symmetry.cell_setting ? _symmetry.Int_Tables_number 96 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 43 21 2' _symmetry.pdbx_full_space_group_name_H-M ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man Polyubiquitin-B 9742.091 1 ? 'K13Q, L15I, G17V, K18M, T19R, T21A, K55M, Q69K, K70R,E71D, T73N, H75Y, L78S, R79S, G82S, G83L, M84R, Q85A' ? ? 2 polymer syn 'Vacuolar protein sorting-associated protein 27' 2824.103 1 ? T1Y ? ? 3 water nat water 18.015 8 ? ? ? ? # _entity_name_com.entity_id 2 _entity_name_com.name 'Golgi retention defective protein 11' # loop_ _entity_poly.entity_id _entity_poly.type _entity_poly.nstd_linkage _entity_poly.nstd_monomer _entity_poly.pdbx_seq_one_letter_code _entity_poly.pdbx_seq_one_letter_code_can _entity_poly.pdbx_strand_id _entity_poly.pdbx_target_identifier 1 'polypeptide(L)' no no ;GGAAQPAMQIFVQTITVMRIALEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGMQLEDGRTLSDYNIKRDSNLYLVSSL RSLRAGAAA ; ;GGAAQPAMQIFVQTITVMRIALEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGMQLEDGRTLSDYNIKRDSNLYLVSSL RSLRAGAAA ; A ? 2 'polypeptide(L)' no no YPEDEEELIRKAIELSLKESRNSA YPEDEEELIRKAIELSLKESRNSA B ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 GLY n 1 2 GLY n 1 3 ALA n 1 4 ALA n 1 5 GLN n 1 6 PRO n 1 7 ALA n 1 8 MET n 1 9 GLN n 1 10 ILE n 1 11 PHE n 1 12 VAL n 1 13 GLN n 1 14 THR n 1 15 ILE n 1 16 THR n 1 17 VAL n 1 18 MET n 1 19 ARG n 1 20 ILE n 1 21 ALA n 1 22 LEU n 1 23 GLU n 1 24 VAL n 1 25 GLU n 1 26 PRO n 1 27 SER n 1 28 ASP n 1 29 THR n 1 30 ILE n 1 31 GLU n 1 32 ASN n 1 33 VAL n 1 34 LYS n 1 35 ALA n 1 36 LYS n 1 37 ILE n 1 38 GLN n 1 39 ASP n 1 40 LYS n 1 41 GLU n 1 42 GLY n 1 43 ILE n 1 44 PRO n 1 45 PRO n 1 46 ASP n 1 47 GLN n 1 48 GLN n 1 49 ARG n 1 50 LEU n 1 51 ILE n 1 52 PHE n 1 53 ALA n 1 54 GLY n 1 55 MET n 1 56 GLN n 1 57 LEU n 1 58 GLU n 1 59 ASP n 1 60 GLY n 1 61 ARG n 1 62 THR n 1 63 LEU n 1 64 SER n 1 65 ASP n 1 66 TYR n 1 67 ASN n 1 68 ILE n 1 69 LYS n 1 70 ARG n 1 71 ASP n 1 72 SER n 1 73 ASN n 1 74 LEU n 1 75 TYR n 1 76 LEU n 1 77 VAL n 1 78 SER n 1 79 SER n 1 80 LEU n 1 81 ARG n 1 82 SER n 1 83 LEU n 1 84 ARG n 1 85 ALA n 1 86 GLY n 1 87 ALA n 1 88 ALA n 1 89 ALA n 2 1 TYR n 2 2 PRO n 2 3 GLU n 2 4 ASP n 2 5 GLU n 2 6 GLU n 2 7 GLU n 2 8 LEU n 2 9 ILE n 2 10 ARG n 2 11 LYS n 2 12 ALA n 2 13 ILE n 2 14 GLU n 2 15 LEU n 2 16 SER n 2 17 LEU n 2 18 LYS n 2 19 GLU n 2 20 SER n 2 21 ARG n 2 22 ASN n 2 23 SER n 2 24 ALA n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type 'Biological sequence' _entity_src_gen.pdbx_beg_seq_num 1 _entity_src_gen.pdbx_end_seq_num 89 _entity_src_gen.gene_src_common_name Human _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene UBB _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Homo sapiens' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 9606 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 562 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain ? _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type ? _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name ? _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _pdbx_entity_src_syn.entity_id 2 _pdbx_entity_src_syn.pdbx_src_id 1 _pdbx_entity_src_syn.pdbx_alt_source_flag sample _pdbx_entity_src_syn.pdbx_beg_seq_num 1 _pdbx_entity_src_syn.pdbx_end_seq_num 24 _pdbx_entity_src_syn.organism_scientific 'Saccharomyces cerevisiae' _pdbx_entity_src_syn.organism_common_name ;Baker's yeast ; _pdbx_entity_src_syn.ncbi_taxonomy_id 559292 _pdbx_entity_src_syn.details ? # loop_ _struct_ref.id _struct_ref.db_name _struct_ref.db_code _struct_ref.pdbx_db_accession _struct_ref.pdbx_db_isoform _struct_ref.entity_id _struct_ref.pdbx_seq_one_letter_code _struct_ref.pdbx_align_begin 1 UNP J3QS39_HUMAN J3QS39 ? 1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQ 1 2 UNP VPS27_YEAST P40343 ? 2 TPEDEEELIRKAIELSLKESRNSA 255 # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 5UCL A 8 ? 85 ? J3QS39 1 ? 78 ? 1 78 2 2 5UCL B 1 ? 24 ? P40343 255 ? 278 ? 255 278 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 5UCL GLY A 1 ? UNP J3QS39 ? ? 'expression tag' -6 1 1 5UCL GLY A 2 ? UNP J3QS39 ? ? 'expression tag' -5 2 1 5UCL ALA A 3 ? UNP J3QS39 ? ? 'expression tag' -4 3 1 5UCL ALA A 4 ? UNP J3QS39 ? ? 'expression tag' -3 4 1 5UCL GLN A 5 ? UNP J3QS39 ? ? 'expression tag' -2 5 1 5UCL PRO A 6 ? UNP J3QS39 ? ? 'expression tag' -1 6 1 5UCL ALA A 7 ? UNP J3QS39 ? ? 'expression tag' 0 7 1 5UCL GLN A 13 ? UNP J3QS39 LYS 6 'engineered mutation' 6 8 1 5UCL ILE A 15 ? UNP J3QS39 LEU 8 'engineered mutation' 8 9 1 5UCL VAL A 17 ? UNP J3QS39 GLY 10 'engineered mutation' 10 10 1 5UCL MET A 18 ? UNP J3QS39 LYS 11 'engineered mutation' 11 11 1 5UCL ARG A 19 ? UNP J3QS39 THR 12 'engineered mutation' 12 12 1 5UCL ALA A 21 ? UNP J3QS39 THR 14 'engineered mutation' 14 13 1 5UCL MET A 55 ? UNP J3QS39 LYS 48 'engineered mutation' 48 14 1 5UCL LYS A 69 ? UNP J3QS39 GLN 62 'engineered mutation' 62 15 1 5UCL ARG A 70 ? UNP J3QS39 LYS 63 'engineered mutation' 63 16 1 5UCL ASP A 71 ? UNP J3QS39 GLU 64 'engineered mutation' 64 17 1 5UCL ASN A 73 ? UNP J3QS39 THR 66 'engineered mutation' 66 18 1 5UCL TYR A 75 ? UNP J3QS39 HIS 68 'engineered mutation' 68 19 1 5UCL SER A 78 ? UNP J3QS39 LEU 71 'engineered mutation' 71 20 1 5UCL SER A 79 ? UNP J3QS39 ARG 72 'engineered mutation' 72 21 1 5UCL SER A 82 ? UNP J3QS39 GLY 75 'engineered mutation' 75 22 1 5UCL LEU A 83 ? UNP J3QS39 GLY 76 'engineered mutation' 76 23 1 5UCL ARG A 84 ? UNP J3QS39 MET 77 'engineered mutation' 77 24 1 5UCL ALA A 85 ? UNP J3QS39 GLN 78 'engineered mutation' 78 25 1 5UCL GLY A 86 ? UNP J3QS39 ? ? 'expression tag' 79 26 1 5UCL ALA A 87 ? UNP J3QS39 ? ? 'expression tag' 80 27 1 5UCL ALA A 88 ? UNP J3QS39 ? ? 'expression tag' 81 28 1 5UCL ALA A 89 ? UNP J3QS39 ? ? 'expression tag' 82 29 2 5UCL TYR B 1 ? UNP P40343 THR 255 'engineered mutation' 255 30 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.absorpt_coefficient_mu ? _exptl.absorpt_correction_T_max ? _exptl.absorpt_correction_T_min ? _exptl.absorpt_correction_type ? _exptl.absorpt_process_details ? _exptl.entry_id 5UCL _exptl.crystals_number 1 _exptl.details ? _exptl.method 'X-RAY DIFFRACTION' _exptl.method_details ? # _exptl_crystal.colour ? _exptl_crystal.density_diffrn ? _exptl_crystal.density_Matthews 2.07 _exptl_crystal.density_method ? _exptl_crystal.density_percent_sol 40.46 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.id 1 _exptl_crystal.preparation ? _exptl_crystal.size_max ? _exptl_crystal.size_mid ? _exptl_crystal.size_min ? _exptl_crystal.size_rad ? _exptl_crystal.colour_lustre ? _exptl_crystal.colour_modifier ? _exptl_crystal.colour_primary ? _exptl_crystal.density_meas ? _exptl_crystal.density_meas_esd ? _exptl_crystal.density_meas_gt ? _exptl_crystal.density_meas_lt ? _exptl_crystal.density_meas_temp ? _exptl_crystal.density_meas_temp_esd ? _exptl_crystal.density_meas_temp_gt ? _exptl_crystal.density_meas_temp_lt ? _exptl_crystal.pdbx_crystal_image_url ? _exptl_crystal.pdbx_crystal_image_format ? _exptl_crystal.pdbx_mosaicity ? _exptl_crystal.pdbx_mosaicity_esd ? # _exptl_crystal_grow.apparatus ? _exptl_crystal_grow.atmosphere ? _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.details ? _exptl_crystal_grow.method 'VAPOR DIFFUSION, HANGING DROP' _exptl_crystal_grow.method_ref ? _exptl_crystal_grow.pH 7.0 _exptl_crystal_grow.pressure ? _exptl_crystal_grow.pressure_esd ? _exptl_crystal_grow.seeding ? _exptl_crystal_grow.seeding_ref ? _exptl_crystal_grow.temp 293 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.temp_esd ? _exptl_crystal_grow.time ? _exptl_crystal_grow.pdbx_details '2.1 M DL-Malic acid' _exptl_crystal_grow.pdbx_pH_range ? # _diffrn.ambient_environment ? _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.ambient_temp_esd ? _diffrn.crystal_id 1 _diffrn.crystal_support ? _diffrn.crystal_treatment ? _diffrn.details ? _diffrn.id 1 _diffrn.ambient_pressure ? _diffrn.ambient_pressure_esd ? _diffrn.ambient_pressure_gt ? _diffrn.ambient_pressure_lt ? _diffrn.ambient_temp_gt ? _diffrn.ambient_temp_lt ? # _diffrn_detector.details ? _diffrn_detector.detector CCD _diffrn_detector.diffrn_id 1 _diffrn_detector.type 'RIGAKU SATURN 944' _diffrn_detector.area_resol_mean ? _diffrn_detector.dtime ? _diffrn_detector.pdbx_frames_total ? _diffrn_detector.pdbx_collection_time_total ? _diffrn_detector.pdbx_collection_date 2014-10-17 # _diffrn_radiation.collimation ? _diffrn_radiation.diffrn_id 1 _diffrn_radiation.filter_edge ? _diffrn_radiation.inhomogeneity ? _diffrn_radiation.monochromator ? _diffrn_radiation.polarisn_norm ? _diffrn_radiation.polarisn_ratio ? _diffrn_radiation.probe ? _diffrn_radiation.type ? _diffrn_radiation.xray_symbol ? _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.pdbx_wavelength_list ? _diffrn_radiation.pdbx_wavelength ? _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_analyzer ? _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 1.5418 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.current ? _diffrn_source.details ? _diffrn_source.diffrn_id 1 _diffrn_source.power ? _diffrn_source.size ? _diffrn_source.source 'ROTATING ANODE' _diffrn_source.target ? _diffrn_source.type 'RIGAKU FR-E DW' _diffrn_source.voltage ? _diffrn_source.take-off_angle ? _diffrn_source.pdbx_wavelength_list 1.5418 _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_synchrotron_beamline ? _diffrn_source.pdbx_synchrotron_site ? # _reflns.B_iso_Wilson_estimate ? _reflns.entry_id 5UCL _reflns.data_reduction_details ? _reflns.data_reduction_method ? _reflns.d_resolution_high 2.35 _reflns.d_resolution_low 41.02 _reflns.details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.number_all ? _reflns.number_obs 4521 _reflns.observed_criterion ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.observed_criterion_I_max ? _reflns.observed_criterion_I_min ? _reflns.observed_criterion_sigma_F ? _reflns.observed_criterion_sigma_I ? _reflns.percent_possible_obs 98.65 _reflns.R_free_details ? _reflns.Rmerge_F_all ? _reflns.Rmerge_F_obs ? _reflns.Friedel_coverage ? _reflns.number_gt ? _reflns.threshold_expression ? _reflns.pdbx_redundancy 9.1 _reflns.pdbx_Rmerge_I_obs 0.059 _reflns.pdbx_Rmerge_I_all ? _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_av_sigmaI ? _reflns.pdbx_netI_over_sigmaI 31.5 _reflns.pdbx_res_netI_over_av_sigmaI_2 ? _reflns.pdbx_res_netI_over_sigmaI_2 ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_d_res_high_opt ? _reflns.pdbx_d_res_low_opt ? _reflns.pdbx_d_res_opt_method ? _reflns.phase_calculation_details ? _reflns.pdbx_Rrim_I_all ? _reflns.pdbx_Rpim_I_all ? _reflns.pdbx_d_opt ? _reflns.pdbx_number_measured_all ? _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 _reflns.pdbx_CC_half ? _reflns.pdbx_R_split ? # _reflns_shell.d_res_high 2.35 _reflns_shell.d_res_low 2.43 _reflns_shell.meanI_over_sigI_all ? _reflns_shell.meanI_over_sigI_obs 3.41 _reflns_shell.number_measured_all ? _reflns_shell.number_measured_obs 424 _reflns_shell.number_possible ? _reflns_shell.number_unique_all ? _reflns_shell.number_unique_obs ? _reflns_shell.percent_possible_all 90.6 _reflns_shell.percent_possible_obs ? _reflns_shell.Rmerge_F_all ? _reflns_shell.Rmerge_F_obs ? _reflns_shell.Rmerge_I_all ? _reflns_shell.Rmerge_I_obs 0.302 _reflns_shell.meanI_over_sigI_gt ? _reflns_shell.meanI_over_uI_all ? _reflns_shell.meanI_over_uI_gt ? _reflns_shell.number_measured_gt ? _reflns_shell.number_unique_gt ? _reflns_shell.percent_possible_gt ? _reflns_shell.Rmerge_F_gt ? _reflns_shell.Rmerge_I_gt ? _reflns_shell.pdbx_redundancy 4.1 _reflns_shell.pdbx_Rsym_value ? _reflns_shell.pdbx_chi_squared ? _reflns_shell.pdbx_netI_over_sigmaI_all ? _reflns_shell.pdbx_netI_over_sigmaI_obs ? _reflns_shell.pdbx_Rrim_I_all ? _reflns_shell.pdbx_Rpim_I_all ? _reflns_shell.pdbx_rejects ? _reflns_shell.pdbx_ordinal 1 _reflns_shell.pdbx_diffrn_id 1 _reflns_shell.pdbx_CC_half 0.96 _reflns_shell.pdbx_R_split ? # _refine.aniso_B[1][1] 2.38 _refine.aniso_B[1][2] 0.00 _refine.aniso_B[1][3] 0.00 _refine.aniso_B[2][2] 2.38 _refine.aniso_B[2][3] 0.00 _refine.aniso_B[3][3] -4.76 _refine.B_iso_max ? _refine.B_iso_mean 63.690 _refine.B_iso_min ? _refine.correlation_coeff_Fo_to_Fc 0.951 _refine.correlation_coeff_Fo_to_Fc_free 0.932 _refine.details 'HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS' _refine.diff_density_max ? _refine.diff_density_max_esd ? _refine.diff_density_min ? _refine.diff_density_min_esd ? _refine.diff_density_rms ? _refine.diff_density_rms_esd ? _refine.entry_id 5UCL _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.ls_abs_structure_details ? _refine.ls_abs_structure_Flack ? _refine.ls_abs_structure_Flack_esd ? _refine.ls_abs_structure_Rogers ? _refine.ls_abs_structure_Rogers_esd ? _refine.ls_d_res_high 2.35 _refine.ls_d_res_low 41.02 _refine.ls_extinction_coef ? _refine.ls_extinction_coef_esd ? _refine.ls_extinction_expression ? _refine.ls_extinction_method ? _refine.ls_goodness_of_fit_all ? _refine.ls_goodness_of_fit_all_esd ? _refine.ls_goodness_of_fit_obs ? _refine.ls_goodness_of_fit_obs_esd ? _refine.ls_hydrogen_treatment ? _refine.ls_matrix_type ? _refine.ls_number_constraints ? _refine.ls_number_parameters ? _refine.ls_number_reflns_all ? _refine.ls_number_reflns_obs 4521 _refine.ls_number_reflns_R_free 243 _refine.ls_number_reflns_R_work ? _refine.ls_number_restraints ? _refine.ls_percent_reflns_obs 98.65 _refine.ls_percent_reflns_R_free 5.1 _refine.ls_R_factor_all ? _refine.ls_R_factor_obs 0.22398 _refine.ls_R_factor_R_free 0.24979 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_R_factor_R_work 0.22253 _refine.ls_R_Fsqd_factor_obs ? _refine.ls_R_I_factor_obs ? _refine.ls_redundancy_reflns_all ? _refine.ls_redundancy_reflns_obs ? _refine.ls_restrained_S_all ? _refine.ls_restrained_S_obs ? _refine.ls_shift_over_esd_max ? _refine.ls_shift_over_esd_mean ? _refine.ls_structure_factor_coef ? _refine.ls_weighting_details ? _refine.ls_weighting_scheme ? _refine.ls_wR_factor_all ? _refine.ls_wR_factor_obs ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.occupancy_max ? _refine.occupancy_min ? _refine.solvent_model_details ? _refine.solvent_model_param_bsol ? _refine.solvent_model_param_ksol ? _refine.ls_R_factor_gt ? _refine.ls_goodness_of_fit_gt ? _refine.ls_goodness_of_fit_ref ? _refine.ls_shift_over_su_max ? _refine.ls_shift_over_su_max_lt ? _refine.ls_shift_over_su_mean ? _refine.ls_shift_over_su_mean_lt ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F ? _refine.pdbx_ls_sigma_Fsqd ? _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_ls_cross_valid_method 'FREE R-VALUE' _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_starting_model '1Q0W, 1UBQ' _refine.pdbx_stereochemistry_target_values ? _refine.pdbx_R_Free_selection_details RANDOM _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_overall_ESU_R 0.353 _refine.pdbx_overall_ESU_R_Free 0.239 _refine.pdbx_solvent_vdw_probe_radii 1.20 _refine.pdbx_solvent_ion_probe_radii 0.80 _refine.pdbx_solvent_shrinkage_radii 0.80 _refine.pdbx_real_space_R ? _refine.pdbx_density_correlation ? _refine.pdbx_pd_number_of_powder_patterns ? _refine.pdbx_pd_number_of_points ? _refine.pdbx_pd_meas_number_of_points ? _refine.pdbx_pd_proc_ls_prof_R_factor ? _refine.pdbx_pd_proc_ls_prof_wR_factor ? _refine.pdbx_pd_Marquardt_correlation_coeff ? _refine.pdbx_pd_Fsqrd_R_factor ? _refine.pdbx_pd_ls_matrix_band_width ? _refine.pdbx_overall_phase_error ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_diffrn_id 1 _refine.overall_SU_B 17.666 _refine.overall_SU_ML 0.186 _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_average_fsc_overall ? _refine.pdbx_average_fsc_work ? _refine.pdbx_average_fsc_free ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id 1 _refine_hist.pdbx_number_atoms_protein 711 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 0 _refine_hist.number_atoms_solvent 8 _refine_hist.number_atoms_total 719 _refine_hist.d_res_high 2.35 _refine_hist.d_res_low 41.02 # loop_ _refine_ls_restr.pdbx_refine_id _refine_ls_restr.criterion _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.number _refine_ls_restr.rejects _refine_ls_restr.type _refine_ls_restr.weight _refine_ls_restr.pdbx_restraint_function 'X-RAY DIFFRACTION' ? 0.014 0.019 717 ? r_bond_refined_d ? ? 'X-RAY DIFFRACTION' ? 0.002 0.020 703 ? r_bond_other_d ? ? 'X-RAY DIFFRACTION' ? 1.820 2.003 969 ? r_angle_refined_deg ? ? 'X-RAY DIFFRACTION' ? 1.028 3.000 1609 ? r_angle_other_deg ? ? 'X-RAY DIFFRACTION' ? 7.298 5.000 89 ? r_dihedral_angle_1_deg ? ? 'X-RAY DIFFRACTION' ? 33.734 25.312 32 ? r_dihedral_angle_2_deg ? ? 'X-RAY DIFFRACTION' ? 17.439 15.000 130 ? r_dihedral_angle_3_deg ? ? 'X-RAY DIFFRACTION' ? 24.254 15.000 5 ? r_dihedral_angle_4_deg ? ? 'X-RAY DIFFRACTION' ? 0.092 0.200 118 ? r_chiral_restr ? ? 'X-RAY DIFFRACTION' ? 0.007 0.021 794 ? r_gen_planes_refined ? ? 'X-RAY DIFFRACTION' ? 0.002 0.020 143 ? r_gen_planes_other ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? r_nbd_refined ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? r_nbd_other ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? r_nbtor_refined ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? r_nbtor_other ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? r_xyhbond_nbd_refined ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? r_xyhbond_nbd_other ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? r_metal_ion_refined ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? r_metal_ion_other ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? r_symmetry_vdw_refined ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? r_symmetry_vdw_other ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? r_symmetry_hbond_refined ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? r_symmetry_hbond_other ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? r_symmetry_metal_ion_refined ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? r_symmetry_metal_ion_other ? ? 'X-RAY DIFFRACTION' ? 0.851 2.636 365 ? r_mcbond_it ? ? 'X-RAY DIFFRACTION' ? 0.850 2.635 364 ? r_mcbond_other ? ? 'X-RAY DIFFRACTION' ? 1.368 3.950 451 ? r_mcangle_it ? ? 'X-RAY DIFFRACTION' ? 1.367 3.951 452 ? r_mcangle_other ? ? 'X-RAY DIFFRACTION' ? 1.034 2.747 352 ? r_scbond_it ? ? 'X-RAY DIFFRACTION' ? 1.033 2.747 353 ? r_scbond_other ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? r_scangle_it ? ? 'X-RAY DIFFRACTION' ? 1.689 4.076 519 ? r_scangle_other ? ? 'X-RAY DIFFRACTION' ? 3.629 20.072 721 ? r_long_range_B_refined ? ? 'X-RAY DIFFRACTION' ? 3.627 20.083 722 ? r_long_range_B_other ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? r_rigid_bond_restr ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? r_sphericity_free ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? r_sphericity_bonded ? ? # _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_ls_shell.d_res_high 2.346 _refine_ls_shell.d_res_low 2.406 _refine_ls_shell.number_reflns_all ? _refine_ls_shell.number_reflns_obs ? _refine_ls_shell.number_reflns_R_free 20 _refine_ls_shell.number_reflns_R_work 274 _refine_ls_shell.percent_reflns_obs 88.29 _refine_ls_shell.percent_reflns_R_free ? _refine_ls_shell.R_factor_all ? _refine_ls_shell.R_factor_obs ? _refine_ls_shell.R_factor_R_free 0.371 _refine_ls_shell.R_factor_R_free_error ? _refine_ls_shell.R_factor_R_work 0.274 _refine_ls_shell.redundancy_reflns_all ? _refine_ls_shell.redundancy_reflns_obs ? _refine_ls_shell.wR_factor_all ? _refine_ls_shell.wR_factor_obs ? _refine_ls_shell.wR_factor_R_free ? _refine_ls_shell.wR_factor_R_work ? _refine_ls_shell.pdbx_total_number_of_bins_used 20 _refine_ls_shell.pdbx_phase_error ? _refine_ls_shell.pdbx_fsc_work ? _refine_ls_shell.pdbx_fsc_free ? # _struct.entry_id 5UCL _struct.title 'Ubiquitin Variant in Complex with Binding Partner' _struct.pdbx_descriptor 'Polyubiquitin-B, Vacuolar protein sorting-associated protein 27' _struct.pdbx_model_details ? _struct.pdbx_formula_weight ? _struct.pdbx_formula_weight_method ? _struct.pdbx_model_type_details ? _struct.pdbx_CASP_flag N # _struct_keywords.entry_id 5UCL _struct_keywords.text 'Ubiquitin Variant, UIM, PROTEIN BINDING' _struct_keywords.pdbx_keywords 'PROTEIN BINDING' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 AA1 THR A 29 ? GLY A 42 ? THR A 22 GLY A 35 1 ? 14 HELX_P HELX_P2 AA2 PRO A 44 ? ASP A 46 ? PRO A 37 ASP A 39 5 ? 3 HELX_P HELX_P3 AA3 LEU A 63 ? ASN A 67 ? LEU A 56 ASN A 60 5 ? 5 HELX_P HELX_P4 AA4 PRO B 2 ? SER B 16 ? PRO B 256 SER B 270 1 ? 15 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # _struct_sheet.id AA1 _struct_sheet.type ? _struct_sheet.number_strands 5 _struct_sheet.details ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense AA1 1 2 ? anti-parallel AA1 2 3 ? parallel AA1 3 4 ? anti-parallel AA1 4 5 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id AA1 1 MET A 18 ? GLU A 23 ? MET A 11 GLU A 16 AA1 2 GLN A 9 ? ILE A 15 ? GLN A 2 ILE A 8 AA1 3 ASN A 73 ? SER A 78 ? ASN A 66 SER A 71 AA1 4 GLN A 48 ? PHE A 52 ? GLN A 41 PHE A 45 AA1 5 MET A 55 ? GLN A 56 ? MET A 48 GLN A 49 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id AA1 1 2 O LEU A 22 ? O LEU A 15 N ILE A 10 ? N ILE A 3 AA1 2 3 N PHE A 11 ? N PHE A 4 O LEU A 74 ? O LEU A 67 AA1 3 4 O TYR A 75 ? O TYR A 68 N ILE A 51 ? N ILE A 44 AA1 4 5 N PHE A 52 ? N PHE A 45 O MET A 55 ? O MET A 48 # _atom_sites.entry_id 5UCL _atom_sites.fract_transf_matrix[1][1] 0.022415 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.022415 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.009584 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C N O S # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 GLY 1 -6 ? ? ? A . n A 1 2 GLY 2 -5 ? ? ? A . n A 1 3 ALA 3 -4 ? ? ? A . n A 1 4 ALA 4 -3 ? ? ? A . n A 1 5 GLN 5 -2 ? ? ? A . n A 1 6 PRO 6 -1 ? ? ? A . n A 1 7 ALA 7 0 ? ? ? A . n A 1 8 MET 8 1 1 MET MET A . n A 1 9 GLN 9 2 2 GLN GLN A . n A 1 10 ILE 10 3 3 ILE ILE A . n A 1 11 PHE 11 4 4 PHE PHE A . n A 1 12 VAL 12 5 5 VAL VAL A . n A 1 13 GLN 13 6 6 GLN GLN A . n A 1 14 THR 14 7 7 THR THR A . n A 1 15 ILE 15 8 8 ILE ILE A . n A 1 16 THR 16 9 ? ? ? A . n A 1 17 VAL 17 10 10 VAL VAL A . n A 1 18 MET 18 11 11 MET MET A . n A 1 19 ARG 19 12 12 ARG ARG A . n A 1 20 ILE 20 13 13 ILE ILE A . n A 1 21 ALA 21 14 14 ALA ALA A . n A 1 22 LEU 22 15 15 LEU LEU A . n A 1 23 GLU 23 16 16 GLU GLU A . n A 1 24 VAL 24 17 17 VAL VAL A . n A 1 25 GLU 25 18 18 GLU GLU A . n A 1 26 PRO 26 19 19 PRO PRO A . n A 1 27 SER 27 20 20 SER SER A . n A 1 28 ASP 28 21 21 ASP ASP A . n A 1 29 THR 29 22 22 THR THR A . n A 1 30 ILE 30 23 23 ILE ILE A . n A 1 31 GLU 31 24 24 GLU GLU A . n A 1 32 ASN 32 25 25 ASN ASN A . n A 1 33 VAL 33 26 26 VAL VAL A . n A 1 34 LYS 34 27 27 LYS LYS A . n A 1 35 ALA 35 28 28 ALA ALA A . n A 1 36 LYS 36 29 29 LYS LYS A . n A 1 37 ILE 37 30 30 ILE ILE A . n A 1 38 GLN 38 31 31 GLN GLN A . n A 1 39 ASP 39 32 32 ASP ASP A . n A 1 40 LYS 40 33 33 LYS LYS A . n A 1 41 GLU 41 34 34 GLU GLU A . n A 1 42 GLY 42 35 35 GLY GLY A . n A 1 43 ILE 43 36 36 ILE ILE A . n A 1 44 PRO 44 37 37 PRO PRO A . n A 1 45 PRO 45 38 38 PRO PRO A . n A 1 46 ASP 46 39 39 ASP ASP A . n A 1 47 GLN 47 40 40 GLN GLN A . n A 1 48 GLN 48 41 41 GLN GLN A . n A 1 49 ARG 49 42 42 ARG ARG A . n A 1 50 LEU 50 43 43 LEU LEU A . n A 1 51 ILE 51 44 44 ILE ILE A . n A 1 52 PHE 52 45 45 PHE PHE A . n A 1 53 ALA 53 46 46 ALA ALA A . n A 1 54 GLY 54 47 47 GLY GLY A . n A 1 55 MET 55 48 48 MET MET A . n A 1 56 GLN 56 49 49 GLN GLN A . n A 1 57 LEU 57 50 50 LEU LEU A . n A 1 58 GLU 58 51 51 GLU GLU A . n A 1 59 ASP 59 52 52 ASP ASP A . n A 1 60 GLY 60 53 53 GLY GLY A . n A 1 61 ARG 61 54 54 ARG ARG A . n A 1 62 THR 62 55 55 THR THR A . n A 1 63 LEU 63 56 56 LEU LEU A . n A 1 64 SER 64 57 57 SER SER A . n A 1 65 ASP 65 58 58 ASP ASP A . n A 1 66 TYR 66 59 59 TYR TYR A . n A 1 67 ASN 67 60 60 ASN ASN A . n A 1 68 ILE 68 61 61 ILE ILE A . n A 1 69 LYS 69 62 62 LYS LYS A . n A 1 70 ARG 70 63 63 ARG ARG A . n A 1 71 ASP 71 64 64 ASP ASP A . n A 1 72 SER 72 65 65 SER SER A . n A 1 73 ASN 73 66 66 ASN ASN A . n A 1 74 LEU 74 67 67 LEU LEU A . n A 1 75 TYR 75 68 68 TYR TYR A . n A 1 76 LEU 76 69 69 LEU LEU A . n A 1 77 VAL 77 70 70 VAL VAL A . n A 1 78 SER 78 71 71 SER SER A . n A 1 79 SER 79 72 72 SER SER A . n A 1 80 LEU 80 73 73 LEU LEU A . n A 1 81 ARG 81 74 74 ARG ARG A . n A 1 82 SER 82 75 75 SER SER A . n A 1 83 LEU 83 76 76 LEU LEU A . n A 1 84 ARG 84 77 ? ? ? A . n A 1 85 ALA 85 78 ? ? ? A . n A 1 86 GLY 86 79 ? ? ? A . n A 1 87 ALA 87 80 ? ? ? A . n A 1 88 ALA 88 81 ? ? ? A . n A 1 89 ALA 89 82 ? ? ? A . n B 2 1 TYR 1 255 255 TYR TYR B . n B 2 2 PRO 2 256 256 PRO PRO B . n B 2 3 GLU 3 257 257 GLU GLU B . n B 2 4 ASP 4 258 258 ASP ASP B . n B 2 5 GLU 5 259 259 GLU GLU B . n B 2 6 GLU 6 260 260 GLU GLU B . n B 2 7 GLU 7 261 261 GLU GLU B . n B 2 8 LEU 8 262 262 LEU LEU B . n B 2 9 ILE 9 263 263 ILE ILE B . n B 2 10 ARG 10 264 264 ARG ARG B . n B 2 11 LYS 11 265 265 LYS LYS B . n B 2 12 ALA 12 266 266 ALA ALA B . n B 2 13 ILE 13 267 267 ILE ILE B . n B 2 14 GLU 14 268 268 GLU GLU B . n B 2 15 LEU 15 269 269 LEU LEU B . n B 2 16 SER 16 270 270 SER SER B . n B 2 17 LEU 17 271 271 LEU LEU B . n B 2 18 LYS 18 272 ? ? ? B . n B 2 19 GLU 19 273 ? ? ? B . n B 2 20 SER 20 274 ? ? ? B . n B 2 21 ARG 21 275 ? ? ? B . n B 2 22 ASN 22 276 ? ? ? B . n B 2 23 SER 23 277 ? ? ? B . n B 2 24 ALA 24 278 ? ? ? B . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 HOH 1 101 2 HOH HOH A . C 3 HOH 2 102 1 HOH HOH A . C 3 HOH 3 103 3 HOH HOH A . C 3 HOH 4 104 8 HOH HOH A . C 3 HOH 5 105 4 HOH HOH A . C 3 HOH 6 106 9 HOH HOH A . C 3 HOH 7 107 7 HOH HOH A . C 3 HOH 8 108 6 HOH HOH A . # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 990 ? 1 MORE -7 ? 1 'SSA (A^2)' 5530 ? # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2017-03-22 2 'Structure model' 1 1 2017-03-29 3 'Structure model' 1 2 2017-05-10 4 'Structure model' 1 3 2017-09-27 5 'Structure model' 1 4 2019-03-06 # loop_ _pdbx_audit_revision_details.ordinal _pdbx_audit_revision_details.revision_ordinal _pdbx_audit_revision_details.data_content_type _pdbx_audit_revision_details.provider _pdbx_audit_revision_details.type _pdbx_audit_revision_details.description 1 1 'Structure model' repository 'Initial release' ? 2 5 'Structure model' repository Obsolete ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Data collection' 2 3 'Structure model' 'Database references' 3 4 'Structure model' 'Author supporting evidence' 4 5 'Structure model' Advisory 5 5 'Structure model' 'Data collection' 6 5 'Structure model' Other # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 4 'Structure model' pdbx_audit_support 2 5 'Structure model' pdbx_database_PDB_obs_spr 3 5 'Structure model' pdbx_database_proc 4 5 'Structure model' pdbx_database_status # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 4 'Structure model' '_pdbx_audit_support.funding_organization' 2 5 'Structure model' '_pdbx_database_status.status_code' 3 5 'Structure model' '_pdbx_database_status.status_code_sf' # loop_ _pdbx_refine_tls.pdbx_refine_id _pdbx_refine_tls.id _pdbx_refine_tls.details _pdbx_refine_tls.method _pdbx_refine_tls.origin_x _pdbx_refine_tls.origin_y _pdbx_refine_tls.origin_z _pdbx_refine_tls.T[1][1] _pdbx_refine_tls.T[2][2] _pdbx_refine_tls.T[3][3] _pdbx_refine_tls.T[1][2] _pdbx_refine_tls.T[1][3] _pdbx_refine_tls.T[2][3] _pdbx_refine_tls.L[1][1] _pdbx_refine_tls.L[2][2] _pdbx_refine_tls.L[3][3] _pdbx_refine_tls.L[1][2] _pdbx_refine_tls.L[1][3] _pdbx_refine_tls.L[2][3] _pdbx_refine_tls.S[1][1] _pdbx_refine_tls.S[1][2] _pdbx_refine_tls.S[1][3] _pdbx_refine_tls.S[2][1] _pdbx_refine_tls.S[2][2] _pdbx_refine_tls.S[2][3] _pdbx_refine_tls.S[3][1] _pdbx_refine_tls.S[3][2] _pdbx_refine_tls.S[3][3] 'X-RAY DIFFRACTION' 1 ? refined 4.5560 38.2015 116.6861 0.1814 0.4949 0.2659 0.0044 -0.0226 -0.0545 7.6231 5.6192 18.0492 -2.5178 2.6419 -4.8670 -0.2649 1.0385 -0.1595 -0.2434 -0.5031 0.0264 0.3837 -1.0880 0.7680 'X-RAY DIFFRACTION' 2 ? refined 1.5943 38.8660 121.0091 0.2224 0.5197 0.3330 0.0319 -0.0247 -0.0319 9.3335 4.4043 29.1322 -4.4377 1.6710 -8.8977 -0.1983 0.5226 -0.2971 0.0265 0.1199 0.0946 0.1316 -1.5029 0.0783 'X-RAY DIFFRACTION' 3 ? refined 8.4487 46.1701 107.0250 0.6188 1.0186 0.3447 0.5404 0.0925 0.2450 23.2138 13.5048 3.7407 15.2371 1.9846 -2.1860 -0.1135 0.4951 1.2973 -0.2889 0.2314 0.9850 0.0118 -0.1647 -0.1179 'X-RAY DIFFRACTION' 4 ? refined 11.3188 49.1747 114.7509 0.5359 0.3540 0.3515 0.0129 -0.0134 0.1305 16.4589 12.6705 9.2939 -2.5691 -1.8376 1.1117 0.1327 1.3291 0.5868 -0.3219 -0.4357 0.1392 -2.1379 0.2150 0.3030 'X-RAY DIFFRACTION' 5 ? refined 3.0353 49.9438 118.7063 0.6134 0.5028 0.5608 0.2660 -0.2365 0.0302 15.4660 2.1718 10.6685 -5.1174 -4.9302 -0.4495 0.5431 1.0105 0.2390 0.0674 -0.0819 0.0453 -1.3131 -1.4122 -0.4612 'X-RAY DIFFRACTION' 6 ? refined 6.8056 50.1292 124.1803 0.5885 0.3704 0.4255 0.1488 -0.0753 0.0317 14.1996 14.9980 4.8965 -12.8932 1.1244 2.9521 -0.4527 -0.5833 0.9983 0.1630 0.1192 -0.6689 -0.3996 -0.5713 0.3335 'X-RAY DIFFRACTION' 7 ? refined 13.1690 42.6191 121.3365 0.3073 0.2445 0.2547 -0.0203 0.0116 0.0378 7.5872 13.5191 8.7050 -9.9397 -4.4874 6.1680 -0.4132 0.0321 0.3035 0.4514 0.1997 -0.3529 -0.5330 0.1850 0.2136 'X-RAY DIFFRACTION' 8 ? refined 18.7847 39.8640 116.9669 0.2375 0.4565 0.2626 -0.0349 0.0318 0.0456 3.3725 16.6572 12.7273 -3.1509 -1.9104 -9.9577 -0.0046 0.0966 0.6038 0.0102 -0.1329 -1.0365 -0.1919 0.8089 0.1375 'X-RAY DIFFRACTION' 9 ? refined 16.7968 45.0832 109.4236 0.8338 0.5289 0.4936 0.1563 0.2725 0.2240 4.8650 2.8959 0.3694 2.2786 -0.3654 -0.9461 0.1902 0.8539 0.1475 0.3291 -0.3248 -0.4167 -0.2130 0.2237 0.1346 'X-RAY DIFFRACTION' 10 ? refined 10.2295 36.8590 107.7935 0.8231 0.7552 0.2898 0.1811 -0.0996 -0.0355 1.4080 4.7957 11.3571 2.2083 0.3503 0.5148 0.5710 0.2323 -0.1433 -0.0008 -0.0427 -0.1202 0.7076 -1.5050 -0.5284 'X-RAY DIFFRACTION' 11 ? refined 8.7114 36.4444 117.8928 0.2455 0.3806 0.3289 0.0299 -0.0795 -0.0632 7.3055 2.2243 22.8221 -0.4792 -6.4533 -4.3827 -0.0628 0.6413 -0.4950 -0.2328 0.0778 -0.0007 0.7122 -0.9753 -0.0150 'X-RAY DIFFRACTION' 12 ? refined 6.3968 46.0251 131.1871 0.5633 0.4988 0.5271 0.2144 0.0137 0.0571 10.8345 15.4374 21.3489 -12.7306 -12.9177 16.4772 -0.0799 0.1766 0.0579 0.0417 -0.1842 0.1321 -0.9973 -1.0838 0.2641 'X-RAY DIFFRACTION' 13 ? refined 15.1727 42.4209 134.7066 0.2354 0.3861 0.3019 -0.0133 -0.0132 -0.0332 6.6901 8.0674 13.4403 -4.4724 -9.4654 5.8359 0.0740 -0.2325 0.1367 -0.1829 0.1465 0.1736 -0.0822 0.3417 -0.2205 'X-RAY DIFFRACTION' 14 ? refined 17.2718 35.4241 129.3582 0.2135 0.2556 0.2086 0.0587 -0.0028 -0.0022 8.5289 14.7631 11.4535 2.4428 1.8357 4.1998 -0.3375 -0.2989 -0.0537 -0.0815 0.1334 -0.4175 -0.0645 1.0801 0.2040 'X-RAY DIFFRACTION' 15 ? refined 14.9487 30.4913 121.6097 0.4312 0.4065 0.2143 0.2001 -0.0285 -0.0496 13.4308 3.2624 8.4530 2.2911 -6.4024 2.8416 -0.2305 0.0465 -0.5676 0.3727 0.0767 -0.1699 0.7183 0.1440 0.1538 # loop_ _pdbx_refine_tls_group.pdbx_refine_id _pdbx_refine_tls_group.id _pdbx_refine_tls_group.refine_tls_id _pdbx_refine_tls_group.beg_auth_asym_id _pdbx_refine_tls_group.beg_auth_seq_id _pdbx_refine_tls_group.beg_label_asym_id _pdbx_refine_tls_group.beg_label_seq_id _pdbx_refine_tls_group.end_auth_asym_id _pdbx_refine_tls_group.end_auth_seq_id _pdbx_refine_tls_group.end_label_asym_id _pdbx_refine_tls_group.end_label_seq_id _pdbx_refine_tls_group.selection _pdbx_refine_tls_group.selection_details 'X-RAY DIFFRACTION' 1 1 A 1 ? ? A 8 ? ? ? ? 'X-RAY DIFFRACTION' 2 2 A 10 ? ? A 15 ? ? ? ? 'X-RAY DIFFRACTION' 3 3 A 16 ? ? A 22 ? ? ? ? 'X-RAY DIFFRACTION' 4 4 A 23 ? ? A 27 ? ? ? ? 'X-RAY DIFFRACTION' 5 5 A 28 ? ? A 33 ? ? ? ? 'X-RAY DIFFRACTION' 6 6 A 34 ? ? A 39 ? ? ? ? 'X-RAY DIFFRACTION' 7 7 A 40 ? ? A 45 ? ? ? ? 'X-RAY DIFFRACTION' 8 8 A 46 ? ? A 51 ? ? ? ? 'X-RAY DIFFRACTION' 9 9 A 52 ? ? A 58 ? ? ? ? 'X-RAY DIFFRACTION' 10 10 A 59 ? ? A 64 ? ? ? ? 'X-RAY DIFFRACTION' 11 11 A 65 ? ? A 69 ? ? ? ? 'X-RAY DIFFRACTION' 12 12 A 70 ? ? A 76 ? ? ? ? 'X-RAY DIFFRACTION' 13 13 B 258 ? ? B 262 ? ? ? ? 'X-RAY DIFFRACTION' 14 14 B 263 ? ? B 268 ? ? ? ? 'X-RAY DIFFRACTION' 15 15 B 269 ? ? B 271 ? ? ? ? # loop_ _software.citation_id _software.classification _software.compiler_name _software.compiler_version _software.contact_author _software.contact_author_email _software.date _software.description _software.dependencies _software.hardware _software.language _software.location _software.mods _software.name _software.os _software.os_version _software.type _software.version _software.pdbx_ordinal ? refinement ? ? ? ? ? ? ? ? ? ? ? REFMAC ? ? ? 5.8.0103 1 ? 'data reduction' ? ? ? ? ? ? ? ? ? ? ? HKL-2000 ? ? ? 2000.0.98.706 2 ? 'data scaling' ? ? ? ? ? ? ? ? ? ? ? HKL-2000 ? ? ? 2000.0.98.706 3 ? phasing ? ? ? ? ? ? ? ? ? ? ? PHASER ? ? ? 6.5.0 4 # loop_ _pdbx_unobs_or_zero_occ_atoms.id _pdbx_unobs_or_zero_occ_atoms.PDB_model_num _pdbx_unobs_or_zero_occ_atoms.polymer_flag _pdbx_unobs_or_zero_occ_atoms.occupancy_flag _pdbx_unobs_or_zero_occ_atoms.auth_asym_id _pdbx_unobs_or_zero_occ_atoms.auth_comp_id _pdbx_unobs_or_zero_occ_atoms.auth_seq_id _pdbx_unobs_or_zero_occ_atoms.PDB_ins_code _pdbx_unobs_or_zero_occ_atoms.auth_atom_id _pdbx_unobs_or_zero_occ_atoms.label_alt_id _pdbx_unobs_or_zero_occ_atoms.label_asym_id _pdbx_unobs_or_zero_occ_atoms.label_comp_id _pdbx_unobs_or_zero_occ_atoms.label_seq_id _pdbx_unobs_or_zero_occ_atoms.label_atom_id 1 1 Y 1 A GLN 2 ? CG ? A GLN 9 CG 2 1 Y 1 A GLN 2 ? CD ? A GLN 9 CD 3 1 Y 1 A GLN 2 ? OE1 ? A GLN 9 OE1 4 1 Y 1 A GLN 2 ? NE2 ? A GLN 9 NE2 5 1 Y 1 A GLU 16 ? CG ? A GLU 23 CG 6 1 Y 1 A GLU 16 ? CD ? A GLU 23 CD 7 1 Y 1 A GLU 16 ? OE1 ? A GLU 23 OE1 8 1 Y 1 A GLU 16 ? OE2 ? A GLU 23 OE2 9 1 Y 1 A GLU 18 ? CG ? A GLU 25 CG 10 1 Y 1 A GLU 18 ? CD ? A GLU 25 CD 11 1 Y 1 A GLU 18 ? OE1 ? A GLU 25 OE1 12 1 Y 1 A GLU 18 ? OE2 ? A GLU 25 OE2 13 1 Y 1 A LYS 29 ? CG ? A LYS 36 CG 14 1 Y 1 A LYS 29 ? CD ? A LYS 36 CD 15 1 Y 1 A LYS 29 ? CE ? A LYS 36 CE 16 1 Y 1 A LYS 29 ? NZ ? A LYS 36 NZ 17 1 Y 1 A SER 57 ? OG ? A SER 64 OG 18 1 Y 1 A LYS 62 ? CG ? A LYS 69 CG 19 1 Y 1 A LYS 62 ? CD ? A LYS 69 CD 20 1 Y 1 A LYS 62 ? CE ? A LYS 69 CE 21 1 Y 1 A LYS 62 ? NZ ? A LYS 69 NZ 22 1 Y 1 A ARG 74 ? CG ? A ARG 81 CG 23 1 Y 1 A ARG 74 ? CD ? A ARG 81 CD 24 1 Y 1 A ARG 74 ? NE ? A ARG 81 NE 25 1 Y 1 A ARG 74 ? CZ ? A ARG 81 CZ 26 1 Y 1 A ARG 74 ? NH1 ? A ARG 81 NH1 27 1 Y 1 A ARG 74 ? NH2 ? A ARG 81 NH2 28 1 Y 1 A SER 75 ? OG ? A SER 82 OG 29 1 Y 1 B GLU 257 ? CG ? B GLU 3 CG 30 1 Y 1 B GLU 257 ? CD ? B GLU 3 CD 31 1 Y 1 B GLU 257 ? OE1 ? B GLU 3 OE1 32 1 Y 1 B GLU 257 ? OE2 ? B GLU 3 OE2 # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A GLY -6 ? A GLY 1 2 1 Y 1 A GLY -5 ? A GLY 2 3 1 Y 1 A ALA -4 ? A ALA 3 4 1 Y 1 A ALA -3 ? A ALA 4 5 1 Y 1 A GLN -2 ? A GLN 5 6 1 Y 1 A PRO -1 ? A PRO 6 7 1 Y 1 A ALA 0 ? A ALA 7 8 1 Y 1 A THR 9 ? A THR 16 9 1 Y 1 A ARG 77 ? A ARG 84 10 1 Y 1 A ALA 78 ? A ALA 85 11 1 Y 1 A GLY 79 ? A GLY 86 12 1 Y 1 A ALA 80 ? A ALA 87 13 1 Y 1 A ALA 81 ? A ALA 88 14 1 Y 1 A ALA 82 ? A ALA 89 15 1 Y 1 B LYS 272 ? B LYS 18 16 1 Y 1 B GLU 273 ? B GLU 19 17 1 Y 1 B SER 274 ? B SER 20 18 1 Y 1 B ARG 275 ? B ARG 21 19 1 Y 1 B ASN 276 ? B ASN 22 20 1 Y 1 B SER 277 ? B SER 23 21 1 Y 1 B ALA 278 ? B ALA 24 # _pdbx_audit_support.funding_organization 'Canadian Institutes of Health Research' _pdbx_audit_support.country Canada _pdbx_audit_support.grant_number FDN-143277 _pdbx_audit_support.ordinal 1 # _pdbx_entity_nonpoly.entity_id 3 _pdbx_entity_nonpoly.name water _pdbx_entity_nonpoly.comp_id HOH #