HEADER PROTEIN BINDING 22-DEC-16 5UCL OBSLTE 06-MAR-19 5UCL 6NJG TITLE UBIQUITIN VARIANT IN COMPLEX WITH BINDING PARTNER COMPND MOL_ID: 1; COMPND 2 MOLECULE: POLYUBIQUITIN-B; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES; COMPND 5 MUTATION: YES; COMPND 6 MOL_ID: 2; COMPND 7 MOLECULE: VACUOLAR PROTEIN SORTING-ASSOCIATED PROTEIN 27; COMPND 8 CHAIN: B; COMPND 9 SYNONYM: GOLGI RETENTION DEFECTIVE PROTEIN 11; COMPND 10 ENGINEERED: YES; COMPND 11 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: UBB; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 MOL_ID: 2; SOURCE 9 SYNTHETIC: YES; SOURCE 10 ORGANISM_SCIENTIFIC: SACCHAROMYCES CEREVISIAE; SOURCE 11 ORGANISM_COMMON: BAKER'S YEAST; SOURCE 12 ORGANISM_TAXID: 559292 KEYWDS UBIQUITIN VARIANT, UIM, PROTEIN BINDING EXPDTA X-RAY DIFFRACTION AUTHOR N.MANCZYK,F.SICHERI REVDAT 5 06-MAR-19 5UCL 1 OBSLTE REVDAT 4 27-SEP-17 5UCL 1 REMARK REVDAT 3 10-MAY-17 5UCL 1 JRNL REVDAT 2 29-MAR-17 5UCL 1 REMARK REVDAT 1 22-MAR-17 5UCL 0 JRNL AUTH N.MANCZYK,B.P.YATES,G.VEGGIANI,A.ERNST,F.SICHERI,S.S.SIDHU JRNL TITL STRUCTURAL AND FUNCTIONAL CHARACTERIZATION OF A UBIQUITIN JRNL TITL 2 VARIANT ENGINEERED FOR TIGHT AND SPECIFIC BINDING TO AN JRNL TITL 3 ALPHA-HELICAL UBIQUITIN INTERACTING MOTIF. JRNL REF PROTEIN SCI. V. 26 1060 2017 JRNL REFN ESSN 1469-896X JRNL PMID 28276594 JRNL DOI 10.1002/PRO.3155 REMARK 2 REMARK 2 RESOLUTION. 2.35 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0103 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.35 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 41.02 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 98.7 REMARK 3 NUMBER OF REFLECTIONS : 4521 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : FREE R-VALUE REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.224 REMARK 3 R VALUE (WORKING SET) : 0.223 REMARK 3 FREE R VALUE : 0.250 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 243 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.35 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.41 REMARK 3 REFLECTION IN BIN (WORKING SET) : 274 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 88.29 REMARK 3 BIN R VALUE (WORKING SET) : 0.2740 REMARK 3 BIN FREE R VALUE SET COUNT : 20 REMARK 3 BIN FREE R VALUE : 0.3710 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 711 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 8 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 63.69 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 2.38000 REMARK 3 B22 (A**2) : 2.38000 REMARK 3 B33 (A**2) : -4.76000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.353 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.239 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.186 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 17.666 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.951 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.932 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 717 ; 0.014 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 703 ; 0.002 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 969 ; 1.820 ; 2.003 REMARK 3 BOND ANGLES OTHERS (DEGREES): 1609 ; 1.028 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 89 ; 7.298 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 32 ;33.734 ;25.312 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 130 ;17.439 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 5 ;24.254 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 118 ; 0.092 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 794 ; 0.007 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 143 ; 0.002 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 365 ; 0.851 ; 2.636 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 364 ; 0.850 ; 2.635 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 451 ; 1.368 ; 3.950 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 452 ; 1.367 ; 3.951 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 352 ; 1.034 ; 2.747 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 353 ; 1.033 ; 2.747 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 519 ; 1.689 ; 4.076 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): 721 ; 3.629 ;20.072 REMARK 3 LONG RANGE B OTHER ATOMS (A**2): 722 ; 3.627 ;20.083 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 15 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 1 A 8 REMARK 3 ORIGIN FOR THE GROUP (A): 4.5560 38.2015 116.6861 REMARK 3 T TENSOR REMARK 3 T11: 0.1814 T22: 0.4949 REMARK 3 T33: 0.2659 T12: 0.0044 REMARK 3 T13: -0.0226 T23: -0.0545 REMARK 3 L TENSOR REMARK 3 L11: 7.6231 L22: 5.6192 REMARK 3 L33: 18.0492 L12: -2.5178 REMARK 3 L13: 2.6419 L23: -4.8670 REMARK 3 S TENSOR REMARK 3 S11: -0.2649 S12: 1.0385 S13: -0.1595 REMARK 3 S21: -0.2434 S22: -0.5031 S23: 0.0264 REMARK 3 S31: 0.3837 S32: -1.0880 S33: 0.7680 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 10 A 15 REMARK 3 ORIGIN FOR THE GROUP (A): 1.5943 38.8660 121.0091 REMARK 3 T TENSOR REMARK 3 T11: 0.2224 T22: 0.5197 REMARK 3 T33: 0.3330 T12: 0.0319 REMARK 3 T13: -0.0247 T23: -0.0319 REMARK 3 L TENSOR REMARK 3 L11: 9.3335 L22: 4.4043 REMARK 3 L33: 29.1322 L12: -4.4377 REMARK 3 L13: 1.6710 L23: -8.8977 REMARK 3 S TENSOR REMARK 3 S11: -0.1983 S12: 0.5226 S13: -0.2971 REMARK 3 S21: 0.0265 S22: 0.1199 S23: 0.0946 REMARK 3 S31: 0.1316 S32: -1.5029 S33: 0.0783 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 16 A 22 REMARK 3 ORIGIN FOR THE GROUP (A): 8.4487 46.1701 107.0250 REMARK 3 T TENSOR REMARK 3 T11: 0.6188 T22: 1.0186 REMARK 3 T33: 0.3447 T12: 0.5404 REMARK 3 T13: 0.0925 T23: 0.2450 REMARK 3 L TENSOR REMARK 3 L11: 23.2138 L22: 13.5048 REMARK 3 L33: 3.7407 L12: 15.2371 REMARK 3 L13: 1.9846 L23: -2.1860 REMARK 3 S TENSOR REMARK 3 S11: -0.1135 S12: 0.4951 S13: 1.2973 REMARK 3 S21: -0.2889 S22: 0.2314 S23: 0.9850 REMARK 3 S31: 0.0118 S32: -0.1647 S33: -0.1179 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 23 A 27 REMARK 3 ORIGIN FOR THE GROUP (A): 11.3188 49.1747 114.7509 REMARK 3 T TENSOR REMARK 3 T11: 0.5359 T22: 0.3540 REMARK 3 T33: 0.3515 T12: 0.0129 REMARK 3 T13: -0.0134 T23: 0.1305 REMARK 3 L TENSOR REMARK 3 L11: 16.4589 L22: 12.6705 REMARK 3 L33: 9.2939 L12: -2.5691 REMARK 3 L13: -1.8376 L23: 1.1117 REMARK 3 S TENSOR REMARK 3 S11: 0.1327 S12: 1.3291 S13: 0.5868 REMARK 3 S21: -0.3219 S22: -0.4357 S23: 0.1392 REMARK 3 S31: -2.1379 S32: 0.2150 S33: 0.3030 REMARK 3 REMARK 3 TLS GROUP : 5 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 28 A 33 REMARK 3 ORIGIN FOR THE GROUP (A): 3.0353 49.9438 118.7063 REMARK 3 T TENSOR REMARK 3 T11: 0.6134 T22: 0.5028 REMARK 3 T33: 0.5608 T12: 0.2660 REMARK 3 T13: -0.2365 T23: 0.0302 REMARK 3 L TENSOR REMARK 3 L11: 15.4660 L22: 2.1718 REMARK 3 L33: 10.6685 L12: -5.1174 REMARK 3 L13: -4.9302 L23: -0.4495 REMARK 3 S TENSOR REMARK 3 S11: 0.5431 S12: 1.0105 S13: 0.2390 REMARK 3 S21: 0.0674 S22: -0.0819 S23: 0.0453 REMARK 3 S31: -1.3131 S32: -1.4122 S33: -0.4612 REMARK 3 REMARK 3 TLS GROUP : 6 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 34 A 39 REMARK 3 ORIGIN FOR THE GROUP (A): 6.8056 50.1292 124.1803 REMARK 3 T TENSOR REMARK 3 T11: 0.5885 T22: 0.3704 REMARK 3 T33: 0.4255 T12: 0.1488 REMARK 3 T13: -0.0753 T23: 0.0317 REMARK 3 L TENSOR REMARK 3 L11: 14.1996 L22: 14.9980 REMARK 3 L33: 4.8965 L12: -12.8932 REMARK 3 L13: 1.1244 L23: 2.9521 REMARK 3 S TENSOR REMARK 3 S11: -0.4527 S12: -0.5833 S13: 0.9983 REMARK 3 S21: 0.1630 S22: 0.1192 S23: -0.6689 REMARK 3 S31: -0.3996 S32: -0.5713 S33: 0.3335 REMARK 3 REMARK 3 TLS GROUP : 7 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 40 A 45 REMARK 3 ORIGIN FOR THE GROUP (A): 13.1690 42.6191 121.3365 REMARK 3 T TENSOR REMARK 3 T11: 0.3073 T22: 0.2445 REMARK 3 T33: 0.2547 T12: -0.0203 REMARK 3 T13: 0.0116 T23: 0.0378 REMARK 3 L TENSOR REMARK 3 L11: 7.5872 L22: 13.5191 REMARK 3 L33: 8.7050 L12: -9.9397 REMARK 3 L13: -4.4874 L23: 6.1680 REMARK 3 S TENSOR REMARK 3 S11: -0.4132 S12: 0.0321 S13: 0.3035 REMARK 3 S21: 0.4514 S22: 0.1997 S23: -0.3529 REMARK 3 S31: -0.5330 S32: 0.1850 S33: 0.2136 REMARK 3 REMARK 3 TLS GROUP : 8 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 46 A 51 REMARK 3 ORIGIN FOR THE GROUP (A): 18.7847 39.8640 116.9669 REMARK 3 T TENSOR REMARK 3 T11: 0.2375 T22: 0.4565 REMARK 3 T33: 0.2626 T12: -0.0349 REMARK 3 T13: 0.0318 T23: 0.0456 REMARK 3 L TENSOR REMARK 3 L11: 3.3725 L22: 16.6572 REMARK 3 L33: 12.7273 L12: -3.1509 REMARK 3 L13: -1.9104 L23: -9.9577 REMARK 3 S TENSOR REMARK 3 S11: -0.0046 S12: 0.0966 S13: 0.6038 REMARK 3 S21: 0.0102 S22: -0.1329 S23: -1.0365 REMARK 3 S31: -0.1919 S32: 0.8089 S33: 0.1375 REMARK 3 REMARK 3 TLS GROUP : 9 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 52 A 58 REMARK 3 ORIGIN FOR THE GROUP (A): 16.7968 45.0832 109.4236 REMARK 3 T TENSOR REMARK 3 T11: 0.8338 T22: 0.5289 REMARK 3 T33: 0.4936 T12: 0.1563 REMARK 3 T13: 0.2725 T23: 0.2240 REMARK 3 L TENSOR REMARK 3 L11: 4.8650 L22: 2.8959 REMARK 3 L33: 0.3694 L12: 2.2786 REMARK 3 L13: -0.3654 L23: -0.9461 REMARK 3 S TENSOR REMARK 3 S11: 0.1902 S12: 0.8539 S13: 0.1475 REMARK 3 S21: 0.3291 S22: -0.3248 S23: -0.4167 REMARK 3 S31: -0.2130 S32: 0.2237 S33: 0.1346 REMARK 3 REMARK 3 TLS GROUP : 10 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 59 A 64 REMARK 3 ORIGIN FOR THE GROUP (A): 10.2295 36.8590 107.7935 REMARK 3 T TENSOR REMARK 3 T11: 0.8231 T22: 0.7552 REMARK 3 T33: 0.2898 T12: 0.1811 REMARK 3 T13: -0.0996 T23: -0.0355 REMARK 3 L TENSOR REMARK 3 L11: 1.4080 L22: 4.7957 REMARK 3 L33: 11.3571 L12: 2.2083 REMARK 3 L13: 0.3503 L23: 0.5148 REMARK 3 S TENSOR REMARK 3 S11: 0.5710 S12: 0.2323 S13: -0.1433 REMARK 3 S21: -0.0008 S22: -0.0427 S23: -0.1202 REMARK 3 S31: 0.7076 S32: -1.5050 S33: -0.5284 REMARK 3 REMARK 3 TLS GROUP : 11 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 65 A 69 REMARK 3 ORIGIN FOR THE GROUP (A): 8.7114 36.4444 117.8928 REMARK 3 T TENSOR REMARK 3 T11: 0.2455 T22: 0.3806 REMARK 3 T33: 0.3289 T12: 0.0299 REMARK 3 T13: -0.0795 T23: -0.0632 REMARK 3 L TENSOR REMARK 3 L11: 7.3055 L22: 2.2243 REMARK 3 L33: 22.8221 L12: -0.4792 REMARK 3 L13: -6.4533 L23: -4.3827 REMARK 3 S TENSOR REMARK 3 S11: -0.0628 S12: 0.6413 S13: -0.4950 REMARK 3 S21: -0.2328 S22: 0.0778 S23: -0.0007 REMARK 3 S31: 0.7122 S32: -0.9753 S33: -0.0150 REMARK 3 REMARK 3 TLS GROUP : 12 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 70 A 76 REMARK 3 ORIGIN FOR THE GROUP (A): 6.3968 46.0251 131.1871 REMARK 3 T TENSOR REMARK 3 T11: 0.5633 T22: 0.4988 REMARK 3 T33: 0.5271 T12: 0.2144 REMARK 3 T13: 0.0137 T23: 0.0571 REMARK 3 L TENSOR REMARK 3 L11: 10.8345 L22: 15.4374 REMARK 3 L33: 21.3489 L12: -12.7306 REMARK 3 L13: -12.9177 L23: 16.4772 REMARK 3 S TENSOR REMARK 3 S11: -0.0799 S12: 0.1766 S13: 0.0579 REMARK 3 S21: 0.0417 S22: -0.1842 S23: 0.1321 REMARK 3 S31: -0.9973 S32: -1.0838 S33: 0.2641 REMARK 3 REMARK 3 TLS GROUP : 13 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 258 B 262 REMARK 3 ORIGIN FOR THE GROUP (A): 15.1727 42.4209 134.7066 REMARK 3 T TENSOR REMARK 3 T11: 0.2354 T22: 0.3861 REMARK 3 T33: 0.3019 T12: -0.0133 REMARK 3 T13: -0.0132 T23: -0.0332 REMARK 3 L TENSOR REMARK 3 L11: 6.6901 L22: 8.0674 REMARK 3 L33: 13.4403 L12: -4.4724 REMARK 3 L13: -9.4654 L23: 5.8359 REMARK 3 S TENSOR REMARK 3 S11: 0.0740 S12: -0.2325 S13: 0.1367 REMARK 3 S21: -0.1829 S22: 0.1465 S23: 0.1736 REMARK 3 S31: -0.0822 S32: 0.3417 S33: -0.2205 REMARK 3 REMARK 3 TLS GROUP : 14 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 263 B 268 REMARK 3 ORIGIN FOR THE GROUP (A): 17.2718 35.4241 129.3582 REMARK 3 T TENSOR REMARK 3 T11: 0.2135 T22: 0.2556 REMARK 3 T33: 0.2086 T12: 0.0587 REMARK 3 T13: -0.0028 T23: -0.0022 REMARK 3 L TENSOR REMARK 3 L11: 8.5289 L22: 14.7631 REMARK 3 L33: 11.4535 L12: 2.4428 REMARK 3 L13: 1.8357 L23: 4.1998 REMARK 3 S TENSOR REMARK 3 S11: -0.3375 S12: -0.2989 S13: -0.0537 REMARK 3 S21: -0.0815 S22: 0.1334 S23: -0.4175 REMARK 3 S31: -0.0645 S32: 1.0801 S33: 0.2040 REMARK 3 REMARK 3 TLS GROUP : 15 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 269 B 271 REMARK 3 ORIGIN FOR THE GROUP (A): 14.9487 30.4913 121.6097 REMARK 3 T TENSOR REMARK 3 T11: 0.4312 T22: 0.4065 REMARK 3 T33: 0.2143 T12: 0.2001 REMARK 3 T13: -0.0285 T23: -0.0496 REMARK 3 L TENSOR REMARK 3 L11: 13.4308 L22: 3.2624 REMARK 3 L33: 8.4530 L12: 2.2911 REMARK 3 L13: -6.4024 L23: 2.8416 REMARK 3 S TENSOR REMARK 3 S11: -0.2305 S12: 0.0465 S13: -0.5676 REMARK 3 S21: 0.3727 S22: 0.0767 S23: -0.1699 REMARK 3 S31: 0.7183 S32: 0.1440 S33: 0.1538 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 5UCL COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 04-JAN-17. REMARK 100 THE DEPOSITION ID IS D_1000225648. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 17-OCT-14 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : RIGAKU FR-E DW REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.5418 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : RIGAKU SATURN 944 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 2000.0.98.706 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 2000.0.98.706 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 4521 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.350 REMARK 200 RESOLUTION RANGE LOW (A) : 41.020 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.7 REMARK 200 DATA REDUNDANCY : 9.100 REMARK 200 R MERGE (I) : 0.05900 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 31.5000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.35 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.43 REMARK 200 COMPLETENESS FOR SHELL (%) : 90.6 REMARK 200 DATA REDUNDANCY IN SHELL : 4.10 REMARK 200 R MERGE FOR SHELL (I) : 0.30200 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 3.410 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER 6.5.0 REMARK 200 STARTING MODEL: 1Q0W, 1UBQ REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 40.46 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.07 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 2.1 M DL-MALIC ACID, PH 7.0, VAPOR REMARK 280 DIFFUSION, HANGING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 43 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y+1/2,X+1/2,Z+3/4 REMARK 290 4555 Y+1/2,-X+1/2,Z+1/4 REMARK 290 5555 -X+1/2,Y+1/2,-Z+3/4 REMARK 290 6555 X+1/2,-Y+1/2,-Z+1/4 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 52.17150 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 22.30650 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 22.30650 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 78.25725 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 22.30650 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 22.30650 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 26.08575 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 22.30650 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 22.30650 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 78.25725 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 22.30650 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 22.30650 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 26.08575 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 52.17150 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 990 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 5530 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -7.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A -6 REMARK 465 GLY A -5 REMARK 465 ALA A -4 REMARK 465 ALA A -3 REMARK 465 GLN A -2 REMARK 465 PRO A -1 REMARK 465 ALA A 0 REMARK 465 THR A 9 REMARK 465 ARG A 77 REMARK 465 ALA A 78 REMARK 465 GLY A 79 REMARK 465 ALA A 80 REMARK 465 ALA A 81 REMARK 465 ALA A 82 REMARK 465 LYS B 272 REMARK 465 GLU B 273 REMARK 465 SER B 274 REMARK 465 ARG B 275 REMARK 465 ASN B 276 REMARK 465 SER B 277 REMARK 465 ALA B 278 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLN A 2 CG CD OE1 NE2 REMARK 470 GLU A 16 CG CD OE1 OE2 REMARK 470 GLU A 18 CG CD OE1 OE2 REMARK 470 LYS A 29 CG CD CE NZ REMARK 470 SER A 57 OG REMARK 470 LYS A 62 CG CD CE NZ REMARK 470 ARG A 74 CG CD NE CZ NH1 NH2 REMARK 470 SER A 75 OG REMARK 470 GLU B 257 CG CD OE1 OE2 DBREF 5UCL A 1 78 UNP J3QS39 J3QS39_HUMAN 1 78 DBREF 5UCL B 255 278 UNP P40343 VPS27_YEAST 255 278 SEQADV 5UCL GLY A -6 UNP J3QS39 EXPRESSION TAG SEQADV 5UCL GLY A -5 UNP J3QS39 EXPRESSION TAG SEQADV 5UCL ALA A -4 UNP J3QS39 EXPRESSION TAG SEQADV 5UCL ALA A -3 UNP J3QS39 EXPRESSION TAG SEQADV 5UCL GLN A -2 UNP J3QS39 EXPRESSION TAG SEQADV 5UCL PRO A -1 UNP J3QS39 EXPRESSION TAG SEQADV 5UCL ALA A 0 UNP J3QS39 EXPRESSION TAG SEQADV 5UCL GLN A 6 UNP J3QS39 LYS 6 ENGINEERED MUTATION SEQADV 5UCL ILE A 8 UNP J3QS39 LEU 8 ENGINEERED MUTATION SEQADV 5UCL VAL A 10 UNP J3QS39 GLY 10 ENGINEERED MUTATION SEQADV 5UCL MET A 11 UNP J3QS39 LYS 11 ENGINEERED MUTATION SEQADV 5UCL ARG A 12 UNP J3QS39 THR 12 ENGINEERED MUTATION SEQADV 5UCL ALA A 14 UNP J3QS39 THR 14 ENGINEERED MUTATION SEQADV 5UCL MET A 48 UNP J3QS39 LYS 48 ENGINEERED MUTATION SEQADV 5UCL LYS A 62 UNP J3QS39 GLN 62 ENGINEERED MUTATION SEQADV 5UCL ARG A 63 UNP J3QS39 LYS 63 ENGINEERED MUTATION SEQADV 5UCL ASP A 64 UNP J3QS39 GLU 64 ENGINEERED MUTATION SEQADV 5UCL ASN A 66 UNP J3QS39 THR 66 ENGINEERED MUTATION SEQADV 5UCL TYR A 68 UNP J3QS39 HIS 68 ENGINEERED MUTATION SEQADV 5UCL SER A 71 UNP J3QS39 LEU 71 ENGINEERED MUTATION SEQADV 5UCL SER A 72 UNP J3QS39 ARG 72 ENGINEERED MUTATION SEQADV 5UCL SER A 75 UNP J3QS39 GLY 75 ENGINEERED MUTATION SEQADV 5UCL LEU A 76 UNP J3QS39 GLY 76 ENGINEERED MUTATION SEQADV 5UCL ARG A 77 UNP J3QS39 MET 77 ENGINEERED MUTATION SEQADV 5UCL ALA A 78 UNP J3QS39 GLN 78 ENGINEERED MUTATION SEQADV 5UCL GLY A 79 UNP J3QS39 EXPRESSION TAG SEQADV 5UCL ALA A 80 UNP J3QS39 EXPRESSION TAG SEQADV 5UCL ALA A 81 UNP J3QS39 EXPRESSION TAG SEQADV 5UCL ALA A 82 UNP J3QS39 EXPRESSION TAG SEQADV 5UCL TYR B 255 UNP P40343 THR 255 ENGINEERED MUTATION SEQRES 1 A 89 GLY GLY ALA ALA GLN PRO ALA MET GLN ILE PHE VAL GLN SEQRES 2 A 89 THR ILE THR VAL MET ARG ILE ALA LEU GLU VAL GLU PRO SEQRES 3 A 89 SER ASP THR ILE GLU ASN VAL LYS ALA LYS ILE GLN ASP SEQRES 4 A 89 LYS GLU GLY ILE PRO PRO ASP GLN GLN ARG LEU ILE PHE SEQRES 5 A 89 ALA GLY MET GLN LEU GLU ASP GLY ARG THR LEU SER ASP SEQRES 6 A 89 TYR ASN ILE LYS ARG ASP SER ASN LEU TYR LEU VAL SER SEQRES 7 A 89 SER LEU ARG SER LEU ARG ALA GLY ALA ALA ALA SEQRES 1 B 24 TYR PRO GLU ASP GLU GLU GLU LEU ILE ARG LYS ALA ILE SEQRES 2 B 24 GLU LEU SER LEU LYS GLU SER ARG ASN SER ALA FORMUL 3 HOH *8(H2 O) HELIX 1 AA1 THR A 22 GLY A 35 1 14 HELIX 2 AA2 PRO A 37 ASP A 39 5 3 HELIX 3 AA3 LEU A 56 ASN A 60 5 5 HELIX 4 AA4 PRO B 256 SER B 270 1 15 SHEET 1 AA1 5 MET A 11 GLU A 16 0 SHEET 2 AA1 5 GLN A 2 ILE A 8 -1 N ILE A 3 O LEU A 15 SHEET 3 AA1 5 ASN A 66 SER A 71 1 O LEU A 67 N PHE A 4 SHEET 4 AA1 5 GLN A 41 PHE A 45 -1 N ILE A 44 O TYR A 68 SHEET 5 AA1 5 MET A 48 GLN A 49 -1 O MET A 48 N PHE A 45 CRYST1 44.613 44.613 104.343 90.00 90.00 90.00 P 43 21 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.022415 0.000000 0.000000 0.00000 SCALE2 0.000000 0.022415 0.000000 0.00000 SCALE3 0.000000 0.000000 0.009584 0.00000