HEADER CELL CYCLE 22-DEC-16 5UCV TITLE CRYSTAL STRUCTURE OF A RIBOSOME BIOGENESIS GTP-BINDING PROTEIN (YSXC) TITLE 2 FROM NEISSERIA GONORRHOEAE WITH BOUND GDP COMPND MOL_ID: 1; COMPND 2 MOLECULE: PROBABLE GTP-BINDING PROTEIN ENGB; COMPND 3 CHAIN: A, B; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: NEISSERIA GONORRHOEAE (STRAIN NCCP11945); SOURCE 3 ORGANISM_TAXID: 521006; SOURCE 4 STRAIN: NCCP11945; SOURCE 5 GENE: ENGB, NGK_0143; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: NEGOA.00252.A.B1 KEYWDS SSGCID, GDP, YSXC, ENGB, RIBOSOME BIOGENSIS, GTP-BINDING, STRUCTURAL KEYWDS 2 GENOMICS, SEATTLE STRUCTURAL GENOMICS CENTER FOR INFECTIOUS DISEASE, KEYWDS 3 CELL CYCLE EXPDTA X-RAY DIFFRACTION AUTHOR SEATTLE STRUCTURAL GENOMICS CENTER FOR INFECTIOUS DISEASE,SEATTLE AUTHOR 2 STRUCTURAL GENOMICS CENTER FOR INFECTIOUS DISEASE (SSGCID) REVDAT 2 04-OCT-23 5UCV 1 REMARK REVDAT 1 11-JAN-17 5UCV 0 JRNL AUTH D.M.DRANOW,S.J.MAYCLIN,D.D.LORIMER,T.E.EDWARDS JRNL TITL CRYSTAL STRUCTURE OF A RIBOSOME BIOGENESIS GTP-BINDING JRNL TITL 2 PROTEIN (YSXC) FROM NEISSERIA GONORRHOEAE WITH BOUND GDP JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.80 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.80 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 48.20 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.350 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 3 NUMBER OF REFLECTIONS : 42797 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.169 REMARK 3 R VALUE (WORKING SET) : 0.167 REMARK 3 FREE R VALUE : 0.207 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.780 REMARK 3 FREE R VALUE TEST SET COUNT : 2046 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 48.2208 - 4.4384 1.00 2912 139 0.1701 0.1870 REMARK 3 2 4.4384 - 3.5232 1.00 2791 138 0.1449 0.1800 REMARK 3 3 3.5232 - 3.0779 1.00 2745 141 0.1639 0.2073 REMARK 3 4 3.0779 - 2.7965 1.00 2731 152 0.1701 0.2153 REMARK 3 5 2.7965 - 2.5961 1.00 2692 142 0.1715 0.2082 REMARK 3 6 2.5961 - 2.4431 1.00 2702 146 0.1620 0.2006 REMARK 3 7 2.4431 - 2.3207 1.00 2726 126 0.1598 0.2402 REMARK 3 8 2.3207 - 2.2197 1.00 2697 120 0.1538 0.2066 REMARK 3 9 2.2197 - 2.1342 1.00 2710 143 0.1634 0.1834 REMARK 3 10 2.1342 - 2.0606 1.00 2685 131 0.1683 0.2111 REMARK 3 11 2.0606 - 1.9962 1.00 2700 117 0.1773 0.2357 REMARK 3 12 1.9962 - 1.9391 1.00 2693 133 0.1773 0.2338 REMARK 3 13 1.9391 - 1.8880 1.00 2660 145 0.1870 0.2363 REMARK 3 14 1.8880 - 1.8420 1.00 2692 121 0.2147 0.2515 REMARK 3 15 1.8420 - 1.8001 1.00 2615 152 0.2446 0.2751 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.200 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 18.110 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 18.40 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 23.75 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.006 3074 REMARK 3 ANGLE : 0.818 4181 REMARK 3 CHIRALITY : 0.052 477 REMARK 3 PLANARITY : 0.005 532 REMARK 3 DIHEDRAL : 12.475 1846 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 10 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 2 THROUGH 75 ) REMARK 3 ORIGIN FOR THE GROUP (A): -2.5967 3.0091 10.6273 REMARK 3 T TENSOR REMARK 3 T11: 0.1772 T22: 0.1747 REMARK 3 T33: 0.1628 T12: -0.0154 REMARK 3 T13: 0.0231 T23: 0.0329 REMARK 3 L TENSOR REMARK 3 L11: 2.5070 L22: 2.3745 REMARK 3 L33: 4.0353 L12: -0.1964 REMARK 3 L13: -0.2885 L23: -1.8778 REMARK 3 S TENSOR REMARK 3 S11: -0.0996 S12: 0.0530 S13: -0.0075 REMARK 3 S21: -0.2471 S22: -0.1491 S23: -0.3461 REMARK 3 S31: -0.0824 S32: 0.4764 S33: 0.1764 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 76 THROUGH 102 ) REMARK 3 ORIGIN FOR THE GROUP (A): -8.1723 12.0930 21.7633 REMARK 3 T TENSOR REMARK 3 T11: 0.1502 T22: 0.1514 REMARK 3 T33: 0.1733 T12: -0.0112 REMARK 3 T13: 0.0141 T23: -0.0204 REMARK 3 L TENSOR REMARK 3 L11: 5.1774 L22: 2.9974 REMARK 3 L33: 3.4164 L12: 1.7090 REMARK 3 L13: 3.8348 L23: 1.9581 REMARK 3 S TENSOR REMARK 3 S11: -0.0195 S12: -0.1874 S13: 0.5165 REMARK 3 S21: 0.0208 S22: -0.0940 S23: -0.2610 REMARK 3 S31: -0.4077 S32: -0.0334 S33: 0.0997 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 103 THROUGH 201 ) REMARK 3 ORIGIN FOR THE GROUP (A): -12.4925 -5.8561 19.8993 REMARK 3 T TENSOR REMARK 3 T11: 0.0823 T22: 0.1108 REMARK 3 T33: 0.1016 T12: 0.0104 REMARK 3 T13: 0.0033 T23: 0.0022 REMARK 3 L TENSOR REMARK 3 L11: 1.0761 L22: 2.0511 REMARK 3 L33: 1.4826 L12: 0.5505 REMARK 3 L13: -0.5065 L23: -0.9410 REMARK 3 S TENSOR REMARK 3 S11: -0.0276 S12: -0.0196 S13: -0.1088 REMARK 3 S21: -0.1414 S22: -0.0978 S23: -0.1577 REMARK 3 S31: 0.1515 S32: 0.0379 S33: 0.0693 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 2 THROUGH 32 ) REMARK 3 ORIGIN FOR THE GROUP (A): -37.7803 6.1274 38.9302 REMARK 3 T TENSOR REMARK 3 T11: 0.0997 T22: 0.1160 REMARK 3 T33: 0.1821 T12: -0.0210 REMARK 3 T13: 0.0206 T23: -0.0354 REMARK 3 L TENSOR REMARK 3 L11: 2.3058 L22: 3.6374 REMARK 3 L33: 1.7983 L12: -0.4977 REMARK 3 L13: -0.0520 L23: -1.6907 REMARK 3 S TENSOR REMARK 3 S11: -0.0154 S12: 0.1282 S13: -0.0855 REMARK 3 S21: -0.0179 S22: 0.0088 S23: 0.3841 REMARK 3 S31: 0.0773 S32: -0.1893 S33: -0.0296 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 33 THROUGH 66 ) REMARK 3 ORIGIN FOR THE GROUP (A): -41.1116 0.8454 44.4171 REMARK 3 T TENSOR REMARK 3 T11: 0.1317 T22: 0.1612 REMARK 3 T33: 0.2312 T12: -0.0220 REMARK 3 T13: 0.0705 T23: -0.0067 REMARK 3 L TENSOR REMARK 3 L11: 2.4043 L22: 3.5415 REMARK 3 L33: 3.6932 L12: -1.0692 REMARK 3 L13: -0.4980 L23: -3.0876 REMARK 3 S TENSOR REMARK 3 S11: 0.0729 S12: 0.0008 S13: -0.1941 REMARK 3 S21: 0.2094 S22: 0.1661 S23: 0.8153 REMARK 3 S31: -0.0006 S32: -0.2914 S33: -0.0086 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 67 THROUGH 102 ) REMARK 3 ORIGIN FOR THE GROUP (A): -33.9957 -1.7382 34.7331 REMARK 3 T TENSOR REMARK 3 T11: 0.1015 T22: 0.1605 REMARK 3 T33: 0.1394 T12: -0.0233 REMARK 3 T13: -0.0013 T23: -0.0242 REMARK 3 L TENSOR REMARK 3 L11: 1.8483 L22: 3.1532 REMARK 3 L33: 2.0219 L12: -0.4560 REMARK 3 L13: -0.1197 L23: 0.4439 REMARK 3 S TENSOR REMARK 3 S11: 0.0562 S12: 0.1947 S13: -0.2525 REMARK 3 S21: 0.0852 S22: -0.0978 S23: 0.2903 REMARK 3 S31: 0.3329 S32: -0.1776 S33: 0.0342 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 103 THROUGH 117 ) REMARK 3 ORIGIN FOR THE GROUP (A): -28.9483 -1.1155 42.7512 REMARK 3 T TENSOR REMARK 3 T11: 0.0674 T22: 0.1022 REMARK 3 T33: 0.0789 T12: -0.0155 REMARK 3 T13: 0.0302 T23: -0.0307 REMARK 3 L TENSOR REMARK 3 L11: 1.0515 L22: 7.6623 REMARK 3 L33: 3.2009 L12: -1.0256 REMARK 3 L13: 0.4597 L23: -3.5544 REMARK 3 S TENSOR REMARK 3 S11: 0.0425 S12: -0.0538 S13: 0.0045 REMARK 3 S21: 0.1313 S22: -0.1132 S23: -0.1534 REMARK 3 S31: 0.0171 S32: 0.0486 S33: 0.0671 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 118 THROUGH 148 ) REMARK 3 ORIGIN FOR THE GROUP (A): -25.2172 -5.3429 43.7652 REMARK 3 T TENSOR REMARK 3 T11: 0.0775 T22: 0.1063 REMARK 3 T33: 0.0915 T12: -0.0196 REMARK 3 T13: 0.0023 T23: -0.0081 REMARK 3 L TENSOR REMARK 3 L11: 1.0694 L22: 1.6162 REMARK 3 L33: 3.6147 L12: 0.2758 REMARK 3 L13: -0.8706 L23: -0.9537 REMARK 3 S TENSOR REMARK 3 S11: 0.0586 S12: -0.0148 S13: -0.0422 REMARK 3 S21: 0.1848 S22: -0.0901 S23: 0.0400 REMARK 3 S31: 0.1194 S32: 0.0157 S33: 0.0214 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 149 THROUGH 168 ) REMARK 3 ORIGIN FOR THE GROUP (A): -19.0617 -8.0715 52.9001 REMARK 3 T TENSOR REMARK 3 T11: 0.1544 T22: 0.1579 REMARK 3 T33: 0.1676 T12: -0.0396 REMARK 3 T13: -0.0680 T23: 0.0029 REMARK 3 L TENSOR REMARK 3 L11: 5.2103 L22: 4.4368 REMARK 3 L33: 7.4402 L12: 3.2891 REMARK 3 L13: -5.1653 L23: -4.8164 REMARK 3 S TENSOR REMARK 3 S11: 0.1222 S12: -0.3065 S13: -0.1220 REMARK 3 S21: 0.2705 S22: -0.2796 S23: -0.2822 REMARK 3 S31: -0.0584 S32: 0.5864 S33: 0.1715 REMARK 3 TLS GROUP : 10 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 169 THROUGH 200 ) REMARK 3 ORIGIN FOR THE GROUP (A): -28.3969 4.0499 52.1652 REMARK 3 T TENSOR REMARK 3 T11: 0.2376 T22: 0.1454 REMARK 3 T33: 0.1229 T12: -0.0248 REMARK 3 T13: 0.0222 T23: -0.0352 REMARK 3 L TENSOR REMARK 3 L11: 1.8625 L22: 2.9864 REMARK 3 L33: 2.6414 L12: -0.2136 REMARK 3 L13: -0.0498 L23: -0.6870 REMARK 3 S TENSOR REMARK 3 S11: -0.0448 S12: -0.1147 S13: 0.0664 REMARK 3 S21: 0.6452 S22: 0.0309 S23: 0.1659 REMARK 3 S31: -0.2521 S32: -0.0670 S33: -0.0324 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5UCV COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 28-DEC-16. REMARK 100 THE DEPOSITION ID IS D_1000225668. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 26-OCT-16 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 21-ID-F REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97872 REMARK 200 MONOCHROMATOR : DIAMOND [111] REMARK 200 OPTICS : BERYLLIUM LENSES REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 300 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 42802 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.800 REMARK 200 RESOLUTION RANGE LOW (A) : 48.204 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 6.058 REMARK 200 R MERGE (I) : 0.07400 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 17.8800 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.80 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.85 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.7 REMARK 200 DATA REDUNDANCY IN SHELL : 5.35 REMARK 200 R MERGE FOR SHELL (I) : 0.56000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.950 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MORDA REMARK 200 STARTING MODEL: 4DHE REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 46.37 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.29 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: NEGOA.00252.A.B1.PW37899 AT 17.5 REMARK 280 MG/ML, INCUBATED WITH 4 MM MGCL2, 3 MM GTP, PROTEIN MIXED 1:1 REMARK 280 AND INCUBATED WITH AN EQUAL VOLUME MCSG1(C4): 25.5% (W/V) PEG- REMARK 280 4000, 15% (V/V) GLYCEROL, 0.085 M SODIUM ACETATE:HCL, 0.17 M REMARK 280 AMMONIUM ACETATE, CRYOPROTECTED WITH 20% ETHYLENE GLYCOL, PH 8.5, REMARK 280 VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 290K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 26.05500 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 63.44500 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 34.22000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 63.44500 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 26.05500 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 34.22000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2710 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 16960 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -29.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A -7 REMARK 465 ALA A -6 REMARK 465 HIS A -5 REMARK 465 HIS A -4 REMARK 465 HIS A -3 REMARK 465 HIS A -2 REMARK 465 HIS A -1 REMARK 465 HIS A 0 REMARK 465 MET A 1 REMARK 465 VAL A 47 REMARK 465 ARG A 48 REMARK 465 LEU A 49 REMARK 465 ALA A 50 REMARK 465 TYR A 51 REMARK 465 VAL A 52 REMARK 465 SER A 53 REMARK 465 LYS A 54 REMARK 465 THR A 55 REMARK 465 PRO A 56 REMARK 465 GLY A 57 REMARK 465 ARG A 58 REMARK 465 THR A 59 REMARK 465 ALA A 202 REMARK 465 ALA A 203 REMARK 465 SER A 204 REMARK 465 SER A 205 REMARK 465 PRO A 206 REMARK 465 GLU A 207 REMARK 465 GLU A 208 REMARK 465 ASN A 209 REMARK 465 MET B -7 REMARK 465 ALA B -6 REMARK 465 HIS B -5 REMARK 465 HIS B -4 REMARK 465 HIS B -3 REMARK 465 HIS B -2 REMARK 465 HIS B -1 REMARK 465 HIS B 0 REMARK 465 MET B 1 REMARK 465 HIS B 46 REMARK 465 VAL B 47 REMARK 465 ARG B 48 REMARK 465 LEU B 49 REMARK 465 ALA B 50 REMARK 465 TYR B 51 REMARK 465 VAL B 52 REMARK 465 SER B 53 REMARK 465 LYS B 54 REMARK 465 THR B 55 REMARK 465 PRO B 56 REMARK 465 GLY B 57 REMARK 465 ARG B 58 REMARK 465 ALA B 201 REMARK 465 ALA B 202 REMARK 465 ALA B 203 REMARK 465 SER B 204 REMARK 465 SER B 205 REMARK 465 PRO B 206 REMARK 465 GLU B 207 REMARK 465 GLU B 208 REMARK 465 ASN B 209 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ASN A 2 CG OD1 ND2 REMARK 470 GLN A 5 CG CD OE1 NE2 REMARK 470 ASN A 6 CG OD1 ND2 REMARK 470 LYS A 8 CG CD CE NZ REMARK 470 LYS A 17 CG CD CE NZ REMARK 470 ASN A 45 CG OD1 ND2 REMARK 470 HIS A 46 CG ND1 CD2 CE1 NE2 REMARK 470 GLN A 60 CG CD OE1 NE2 REMARK 470 GLN A 68 CG CD OE1 NE2 REMARK 470 TYR A 81 CG CD1 CD2 CE1 CE2 CZ OH REMARK 470 GLN A 83 CG CD OE1 NE2 REMARK 470 GLU A 86 CG CD OE1 OE2 REMARK 470 LEU A 95 CG CD1 CD2 REMARK 470 LYS A 164 CG CD CE NZ REMARK 470 ARG A 169 CG CD NE CZ NH1 NH2 REMARK 470 ASN B 2 CG OD1 ND2 REMARK 470 GLN B 5 CG CD OE1 NE2 REMARK 470 LYS B 8 CG CD CE NZ REMARK 470 LYS B 17 CG CD CE NZ REMARK 470 THR B 59 OG1 CG2 REMARK 470 GLN B 60 CG CD OE1 NE2 REMARK 470 GLN B 68 CG CD OE1 NE2 REMARK 470 LYS B 164 CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 200 -17.76 81.78 REMARK 500 HIS B 61 -165.94 -128.85 REMARK 500 ALA B 82 -6.06 80.15 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH B 580 DISTANCE = 6.00 ANGSTROMS REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ACT A 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GDP A 302 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CL A 303 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PO4 A 304 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ACT B 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL B 302 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: SSGCID-NEGOA.00252.A RELATED DB: TARGETTRACK DBREF 5UCV A 1 209 UNP B4RQ29 ENGB_NEIG2 1 209 DBREF 5UCV B 1 209 UNP B4RQ29 ENGB_NEIG2 1 209 SEQADV 5UCV MET A -7 UNP B4RQ29 INITIATING METHIONINE SEQADV 5UCV ALA A -6 UNP B4RQ29 EXPRESSION TAG SEQADV 5UCV HIS A -5 UNP B4RQ29 EXPRESSION TAG SEQADV 5UCV HIS A -4 UNP B4RQ29 EXPRESSION TAG SEQADV 5UCV HIS A -3 UNP B4RQ29 EXPRESSION TAG SEQADV 5UCV HIS A -2 UNP B4RQ29 EXPRESSION TAG SEQADV 5UCV HIS A -1 UNP B4RQ29 EXPRESSION TAG SEQADV 5UCV HIS A 0 UNP B4RQ29 EXPRESSION TAG SEQADV 5UCV MET B -7 UNP B4RQ29 INITIATING METHIONINE SEQADV 5UCV ALA B -6 UNP B4RQ29 EXPRESSION TAG SEQADV 5UCV HIS B -5 UNP B4RQ29 EXPRESSION TAG SEQADV 5UCV HIS B -4 UNP B4RQ29 EXPRESSION TAG SEQADV 5UCV HIS B -3 UNP B4RQ29 EXPRESSION TAG SEQADV 5UCV HIS B -2 UNP B4RQ29 EXPRESSION TAG SEQADV 5UCV HIS B -1 UNP B4RQ29 EXPRESSION TAG SEQADV 5UCV HIS B 0 UNP B4RQ29 EXPRESSION TAG SEQRES 1 A 217 MET ALA HIS HIS HIS HIS HIS HIS MET ASN LEU PHE GLN SEQRES 2 A 217 ASN ALA LYS PHE PHE THR THR VAL ASN HIS LEU LYS ASP SEQRES 3 A 217 LEU PRO ASP THR PRO LEU GLU ILE ALA PHE VAL GLY ARG SEQRES 4 A 217 SER ASN ALA GLY LYS SER SER ALA ILE ASN THR LEU THR SEQRES 5 A 217 ASN HIS VAL ARG LEU ALA TYR VAL SER LYS THR PRO GLY SEQRES 6 A 217 ARG THR GLN HIS ILE ASN PHE PHE GLU LEU GLN ASN GLY SEQRES 7 A 217 ASN PHE MET VAL ASP LEU PRO GLY TYR GLY TYR ALA GLN SEQRES 8 A 217 VAL PRO GLU ALA VAL ARG ALA HIS TRP VAL ASN LEU LEU SEQRES 9 A 217 GLY ASP TYR LEU ARG HIS ARG LYS GLN LEU ILE GLY LEU SEQRES 10 A 217 VAL LEU ILE MET ASP ALA ARG HIS PRO LEU LYS GLU LEU SEQRES 11 A 217 ASP ILE ARG MET LEU ASP PHE PHE HIS THR THR GLY ARG SEQRES 12 A 217 PRO VAL HIS ILE LEU LEU SER LYS ALA ASP LYS LEU SER SEQRES 13 A 217 LYS ASN GLU GLN ILE LYS THR LEU SER GLN VAL LYS LYS SEQRES 14 A 217 LEU LEU LYS PRO TYR SER ASP ARG GLN ASN ILE SER VAL SEQRES 15 A 217 GLN LEU PHE SER SER LEU LYS LYS GLN GLY ILE ASP GLU SEQRES 16 A 217 ALA ASN ARG THR VAL GLY SER TRP PHE ASP ALA ALA ASP SEQRES 17 A 217 ALA ALA ALA SER SER PRO GLU GLU ASN SEQRES 1 B 217 MET ALA HIS HIS HIS HIS HIS HIS MET ASN LEU PHE GLN SEQRES 2 B 217 ASN ALA LYS PHE PHE THR THR VAL ASN HIS LEU LYS ASP SEQRES 3 B 217 LEU PRO ASP THR PRO LEU GLU ILE ALA PHE VAL GLY ARG SEQRES 4 B 217 SER ASN ALA GLY LYS SER SER ALA ILE ASN THR LEU THR SEQRES 5 B 217 ASN HIS VAL ARG LEU ALA TYR VAL SER LYS THR PRO GLY SEQRES 6 B 217 ARG THR GLN HIS ILE ASN PHE PHE GLU LEU GLN ASN GLY SEQRES 7 B 217 ASN PHE MET VAL ASP LEU PRO GLY TYR GLY TYR ALA GLN SEQRES 8 B 217 VAL PRO GLU ALA VAL ARG ALA HIS TRP VAL ASN LEU LEU SEQRES 9 B 217 GLY ASP TYR LEU ARG HIS ARG LYS GLN LEU ILE GLY LEU SEQRES 10 B 217 VAL LEU ILE MET ASP ALA ARG HIS PRO LEU LYS GLU LEU SEQRES 11 B 217 ASP ILE ARG MET LEU ASP PHE PHE HIS THR THR GLY ARG SEQRES 12 B 217 PRO VAL HIS ILE LEU LEU SER LYS ALA ASP LYS LEU SER SEQRES 13 B 217 LYS ASN GLU GLN ILE LYS THR LEU SER GLN VAL LYS LYS SEQRES 14 B 217 LEU LEU LYS PRO TYR SER ASP ARG GLN ASN ILE SER VAL SEQRES 15 B 217 GLN LEU PHE SER SER LEU LYS LYS GLN GLY ILE ASP GLU SEQRES 16 B 217 ALA ASN ARG THR VAL GLY SER TRP PHE ASP ALA ALA ASP SEQRES 17 B 217 ALA ALA ALA SER SER PRO GLU GLU ASN HET ACT A 301 4 HET GDP A 302 28 HET CL A 303 1 HET PO4 A 304 5 HET ACT B 301 4 HET GOL B 302 12 HETNAM ACT ACETATE ION HETNAM GDP GUANOSINE-5'-DIPHOSPHATE HETNAM CL CHLORIDE ION HETNAM PO4 PHOSPHATE ION HETNAM GOL GLYCEROL HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 3 ACT 2(C2 H3 O2 1-) FORMUL 4 GDP C10 H15 N5 O11 P2 FORMUL 5 CL CL 1- FORMUL 6 PO4 O4 P 3- FORMUL 8 GOL C3 H8 O3 FORMUL 9 HOH *315(H2 O) HELIX 1 AA1 HIS A 15 LEU A 19 5 5 HELIX 2 AA2 GLY A 35 ASN A 45 1 11 HELIX 3 AA3 PRO A 85 ARG A 103 1 19 HELIX 4 AA4 LYS A 120 THR A 132 1 13 HELIX 5 AA5 LYS A 143 LEU A 147 5 5 HELIX 6 AA6 SER A 148 LYS A 164 1 17 HELIX 7 AA7 PRO A 165 ARG A 169 5 5 HELIX 8 AA8 GLY A 184 ALA A 199 1 16 HELIX 9 AA9 LEU B 3 ALA B 7 5 5 HELIX 10 AB1 HIS B 15 LEU B 19 5 5 HELIX 11 AB2 SER B 32 ASN B 45 1 14 HELIX 12 AB3 GLN B 68 GLY B 70 5 3 HELIX 13 AB4 PRO B 85 ALA B 87 5 3 HELIX 14 AB5 VAL B 88 ARG B 103 1 16 HELIX 15 AB6 LYS B 120 THR B 132 1 13 HELIX 16 AB7 LYS B 143 LEU B 147 5 5 HELIX 17 AB8 SER B 148 LYS B 164 1 17 HELIX 18 AB9 PRO B 165 ARG B 169 5 5 HELIX 19 AC1 GLY B 184 ASP B 200 1 17 SHEET 1 AA1 7 LYS A 8 VAL A 13 0 SHEET 2 AA1 7 ILE A 62 GLU A 66 -1 O PHE A 64 N PHE A 10 SHEET 3 AA1 7 PHE A 72 ASP A 75 -1 O ASP A 75 N ASN A 63 SHEET 4 AA1 7 GLU A 25 GLY A 30 1 N PHE A 28 O VAL A 74 SHEET 5 AA1 7 LEU A 106 ASP A 114 1 O VAL A 110 N ALA A 27 SHEET 6 AA1 7 VAL A 137 SER A 142 1 O HIS A 138 N LEU A 109 SHEET 7 AA1 7 ILE A 172 LEU A 176 1 O GLN A 175 N LEU A 141 SHEET 1 AA2 7 LYS B 8 VAL B 13 0 SHEET 2 AA2 7 ILE B 62 GLU B 66 -1 O PHE B 64 N THR B 11 SHEET 3 AA2 7 PHE B 72 ASP B 75 -1 O MET B 73 N PHE B 65 SHEET 4 AA2 7 GLU B 25 GLY B 30 1 N PHE B 28 O VAL B 74 SHEET 5 AA2 7 LEU B 106 ASP B 114 1 O VAL B 110 N ALA B 27 SHEET 6 AA2 7 VAL B 137 SER B 142 1 O HIS B 138 N LEU B 109 SHEET 7 AA2 7 ILE B 172 LEU B 176 1 O GLN B 175 N LEU B 141 SITE 1 AC1 4 GLU A 121 ILE A 124 HIS B 102 HOH B 439 SITE 1 AC2 19 ASN A 33 ALA A 34 GLY A 35 LYS A 36 SITE 2 AC2 19 SER A 37 SER A 38 LYS A 143 ASP A 145 SITE 3 AC2 19 LYS A 146 SER A 178 SER A 179 LEU A 180 SITE 4 AC2 19 HOH A 402 HOH A 414 HOH A 416 HOH A 450 SITE 5 AC2 19 HOH A 452 HOH A 474 HOH A 490 SITE 1 AC3 3 GLU A 121 HOH A 528 ARG B 169 SITE 1 AC4 6 ASP A 98 ARG A 103 HOH A 404 HOH A 407 SITE 2 AC4 6 HOH A 420 LYS B 146 SITE 1 AC5 1 ASP B 197 SITE 1 AC6 8 SER B 38 LYS B 143 ASP B 145 SER B 178 SITE 2 AC6 8 SER B 179 LEU B 180 HOH B 410 HOH B 414 CRYST1 52.110 68.440 126.890 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.019190 0.000000 0.000000 0.00000 SCALE2 0.000000 0.014611 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007881 0.00000