data_5UD8 # _entry.id 5UD8 # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.308 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code PDB 5UD8 WWPDB D_1000225683 # _pdbx_database_related.content_type unspecified _pdbx_database_related.db_id 5UD7 _pdbx_database_related.db_name PDB _pdbx_database_related.details . # _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.entry_id 5UD8 _pdbx_database_status.recvd_initial_deposition_date 2016-12-23 _pdbx_database_status.SG_entry N _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y # loop_ _audit_author.name _audit_author.pdbx_ordinal _audit_author.identifier_ORCID 'Sudom, A.' 1 ? 'Min, X.' 2 ? 'Wang, Z.' 3 ? # _citation.abstract ? _citation.abstract_id_CAS ? _citation.book_id_ISBN ? _citation.book_publisher ? _citation.book_publisher_city ? _citation.book_title ? _citation.coordinate_linkage ? _citation.country US _citation.database_id_Medline ? _citation.details ? _citation.id primary _citation.journal_abbrev 'J. Biol. Chem.' _citation.journal_id_ASTM JBCHA3 _citation.journal_id_CSD 0071 _citation.journal_id_ISSN 1083-351X _citation.journal_full ? _citation.journal_issue ? _citation.journal_volume 293 _citation.language ? _citation.page_first 12634 _citation.page_last 12646 _citation.title ;Molecular basis for the loss-of-function effects of the Alzheimer's disease-associated R47H variant of the immune receptor TREM2. ; _citation.year 2018 _citation.database_id_CSD ? _citation.pdbx_database_id_DOI 10.1074/jbc.RA118.002352 _citation.pdbx_database_id_PubMed 29794134 _citation.unpublished_flag ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Sudom, A.' 1 ? primary 'Talreja, S.' 2 ? primary 'Danao, J.' 3 ? primary 'Bragg, E.' 4 ? primary 'Kegel, R.' 5 ? primary 'Min, X.' 6 ? primary 'Richardson, J.' 7 ? primary 'Zhang, Z.' 8 ? primary 'Sharkov, N.' 9 ? primary 'Marcora, E.' 10 0000-0002-3829-4927 primary 'Thibault, S.' 11 ? primary 'Bradley, J.' 12 0000-0002-4887-778X primary 'Wood, S.' 13 ? primary 'Lim, A.C.' 14 ? primary 'Chen, H.' 15 ? primary 'Wang, S.' 16 ? primary 'Foltz, I.N.' 17 ? primary 'Sambashivan, S.' 18 ? primary 'Wang, Z.' 19 ? # _cell.angle_alpha 90.000 _cell.angle_alpha_esd ? _cell.angle_beta 90.000 _cell.angle_beta_esd ? _cell.angle_gamma 90.000 _cell.angle_gamma_esd ? _cell.entry_id 5UD8 _cell.details ? _cell.formula_units_Z ? _cell.length_a 23.790 _cell.length_a_esd ? _cell.length_b 62.530 _cell.length_b_esd ? _cell.length_c 125.270 _cell.length_c_esd ? _cell.volume ? _cell.volume_esd ? _cell.Z_PDB 8 _cell.reciprocal_angle_alpha ? _cell.reciprocal_angle_beta ? _cell.reciprocal_angle_gamma ? _cell.reciprocal_angle_alpha_esd ? _cell.reciprocal_angle_beta_esd ? _cell.reciprocal_angle_gamma_esd ? _cell.reciprocal_length_a ? _cell.reciprocal_length_b ? _cell.reciprocal_length_c ? _cell.reciprocal_length_a_esd ? _cell.reciprocal_length_b_esd ? _cell.reciprocal_length_c_esd ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 5UD8 _symmetry.cell_setting ? _symmetry.Int_Tables_number 18 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 2 21 21' _symmetry.pdbx_full_space_group_name_H-M ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'Triggering receptor expressed on myeloid cells 2' 12530.212 2 ? ? ? ? 2 water nat water 18.015 113 ? ? ? ? # _entity_name_com.entity_id 1 _entity_name_com.name 'TREM-2,Triggering receptor expressed on monocytes 2' # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code ;HNTTVFQGVAGQSLQVSCPYDSMKHWGRHKAWCRQLGEKGPCQRVVSTHNLWLLSFLRRWNGSTAITDDTLGGTLTITLR NLQPHDAGLYQCQSLHGSEADTLRKVLVEVLA ; _entity_poly.pdbx_seq_one_letter_code_can ;HNTTVFQGVAGQSLQVSCPYDSMKHWGRHKAWCRQLGEKGPCQRVVSTHNLWLLSFLRRWNGSTAITDDTLGGTLTITLR NLQPHDAGLYQCQSLHGSEADTLRKVLVEVLA ; _entity_poly.pdbx_strand_id A,B _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 HIS n 1 2 ASN n 1 3 THR n 1 4 THR n 1 5 VAL n 1 6 PHE n 1 7 GLN n 1 8 GLY n 1 9 VAL n 1 10 ALA n 1 11 GLY n 1 12 GLN n 1 13 SER n 1 14 LEU n 1 15 GLN n 1 16 VAL n 1 17 SER n 1 18 CYS n 1 19 PRO n 1 20 TYR n 1 21 ASP n 1 22 SER n 1 23 MET n 1 24 LYS n 1 25 HIS n 1 26 TRP n 1 27 GLY n 1 28 ARG n 1 29 HIS n 1 30 LYS n 1 31 ALA n 1 32 TRP n 1 33 CYS n 1 34 ARG n 1 35 GLN n 1 36 LEU n 1 37 GLY n 1 38 GLU n 1 39 LYS n 1 40 GLY n 1 41 PRO n 1 42 CYS n 1 43 GLN n 1 44 ARG n 1 45 VAL n 1 46 VAL n 1 47 SER n 1 48 THR n 1 49 HIS n 1 50 ASN n 1 51 LEU n 1 52 TRP n 1 53 LEU n 1 54 LEU n 1 55 SER n 1 56 PHE n 1 57 LEU n 1 58 ARG n 1 59 ARG n 1 60 TRP n 1 61 ASN n 1 62 GLY n 1 63 SER n 1 64 THR n 1 65 ALA n 1 66 ILE n 1 67 THR n 1 68 ASP n 1 69 ASP n 1 70 THR n 1 71 LEU n 1 72 GLY n 1 73 GLY n 1 74 THR n 1 75 LEU n 1 76 THR n 1 77 ILE n 1 78 THR n 1 79 LEU n 1 80 ARG n 1 81 ASN n 1 82 LEU n 1 83 GLN n 1 84 PRO n 1 85 HIS n 1 86 ASP n 1 87 ALA n 1 88 GLY n 1 89 LEU n 1 90 TYR n 1 91 GLN n 1 92 CYS n 1 93 GLN n 1 94 SER n 1 95 LEU n 1 96 HIS n 1 97 GLY n 1 98 SER n 1 99 GLU n 1 100 ALA n 1 101 ASP n 1 102 THR n 1 103 LEU n 1 104 ARG n 1 105 LYS n 1 106 VAL n 1 107 LEU n 1 108 VAL n 1 109 GLU n 1 110 VAL n 1 111 LEU n 1 112 ALA n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type 'Biological sequence' _entity_src_gen.pdbx_beg_seq_num 1 _entity_src_gen.pdbx_end_seq_num 112 _entity_src_gen.gene_src_common_name Human _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene TREM2 _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Homo sapiens' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 9606 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 469008 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain 'BL21(DE3)' _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type plasmid _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name pET24 _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code TREM2_HUMAN _struct_ref.pdbx_db_accession Q9NZC2 _struct_ref.pdbx_db_isoform Q9NZC2-2 _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ;HNTTVFQGVAGQSLQVSCPYDSMKHWGRRKAWCRQLGEKGPCQRVVSTHNLWLLSFLRRWNGSTAITDDTLGGTLTITLR NLQPHDAGLYQCQSLHGSEADTLRKVLVEVLA ; _struct_ref.pdbx_align_begin 19 # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 5UD8 A 1 ? 112 ? Q9NZC2 19 ? 130 ? 19 130 2 1 5UD8 B 1 ? 112 ? Q9NZC2 19 ? 130 ? 19 130 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 5UD8 HIS A 29 ? UNP Q9NZC2 ARG 47 'engineered mutation' 47 1 2 5UD8 HIS B 29 ? UNP Q9NZC2 ARG 47 'engineered mutation' 47 2 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.absorpt_coefficient_mu ? _exptl.absorpt_correction_T_max ? _exptl.absorpt_correction_T_min ? _exptl.absorpt_correction_type ? _exptl.absorpt_process_details ? _exptl.entry_id 5UD8 _exptl.crystals_number 1 _exptl.details ? _exptl.method 'X-RAY DIFFRACTION' _exptl.method_details ? # _exptl_crystal.colour ? _exptl_crystal.density_diffrn ? _exptl_crystal.density_Matthews 1.86 _exptl_crystal.density_method ? _exptl_crystal.density_percent_sol 33.84 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.id 1 _exptl_crystal.preparation ? _exptl_crystal.size_max ? _exptl_crystal.size_mid ? _exptl_crystal.size_min ? _exptl_crystal.size_rad ? _exptl_crystal.colour_lustre ? _exptl_crystal.colour_modifier ? _exptl_crystal.colour_primary ? _exptl_crystal.density_meas ? _exptl_crystal.density_meas_esd ? _exptl_crystal.density_meas_gt ? _exptl_crystal.density_meas_lt ? _exptl_crystal.density_meas_temp ? _exptl_crystal.density_meas_temp_esd ? _exptl_crystal.density_meas_temp_gt ? _exptl_crystal.density_meas_temp_lt ? _exptl_crystal.pdbx_crystal_image_url ? _exptl_crystal.pdbx_crystal_image_format ? _exptl_crystal.pdbx_mosaicity 0.590 _exptl_crystal.pdbx_mosaicity_esd ? # _exptl_crystal_grow.apparatus ? _exptl_crystal_grow.atmosphere ? _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.details ? _exptl_crystal_grow.method EVAPORATION _exptl_crystal_grow.method_ref ? _exptl_crystal_grow.pH 8.0 _exptl_crystal_grow.pressure ? _exptl_crystal_grow.pressure_esd ? _exptl_crystal_grow.seeding ? _exptl_crystal_grow.seeding_ref ? _exptl_crystal_grow.temp 293 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.temp_esd ? _exptl_crystal_grow.time ? _exptl_crystal_grow.pdbx_details '30% PEG 6000, 0.1 M Tris 8.0' _exptl_crystal_grow.pdbx_pH_range ? # _diffrn.ambient_environment ? _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.ambient_temp_esd ? _diffrn.crystal_id 1 _diffrn.crystal_support ? _diffrn.crystal_treatment ? _diffrn.details ? _diffrn.id 1 _diffrn.ambient_pressure ? _diffrn.ambient_pressure_esd ? _diffrn.ambient_pressure_gt ? _diffrn.ambient_pressure_lt ? _diffrn.ambient_temp_gt ? _diffrn.ambient_temp_lt ? # _diffrn_detector.details '3X3 CCD ARRAY' _diffrn_detector.detector CCD _diffrn_detector.diffrn_id 1 _diffrn_detector.type 'ADSC QUANTUM 315' _diffrn_detector.area_resol_mean ? _diffrn_detector.dtime ? _diffrn_detector.pdbx_frames_total ? _diffrn_detector.pdbx_collection_time_total ? _diffrn_detector.pdbx_collection_date 2013-10-25 # _diffrn_radiation.collimation ? _diffrn_radiation.diffrn_id 1 _diffrn_radiation.filter_edge ? _diffrn_radiation.inhomogeneity ? _diffrn_radiation.monochromator SI _diffrn_radiation.polarisn_norm ? _diffrn_radiation.polarisn_ratio ? _diffrn_radiation.probe ? _diffrn_radiation.type ? _diffrn_radiation.xray_symbol ? _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.pdbx_wavelength_list ? _diffrn_radiation.pdbx_wavelength ? _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_analyzer ? _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 1.0 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.current ? _diffrn_source.details ? _diffrn_source.diffrn_id 1 _diffrn_source.power ? _diffrn_source.size ? _diffrn_source.source SYNCHROTRON _diffrn_source.target ? _diffrn_source.type 'ALS BEAMLINE 5.0.2' _diffrn_source.voltage ? _diffrn_source.take-off_angle ? _diffrn_source.pdbx_wavelength_list 1.0 _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_synchrotron_beamline 5.0.2 _diffrn_source.pdbx_synchrotron_site ALS # _reflns.B_iso_Wilson_estimate 14.290 _reflns.entry_id 5UD8 _reflns.data_reduction_details ? _reflns.data_reduction_method ? _reflns.d_resolution_high 1.800 _reflns.d_resolution_low 44.250 _reflns.details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.number_all ? _reflns.number_obs 17947 _reflns.observed_criterion ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.observed_criterion_I_max ? _reflns.observed_criterion_I_min ? _reflns.observed_criterion_sigma_F ? _reflns.observed_criterion_sigma_I ? _reflns.percent_possible_obs 98.700 _reflns.R_free_details ? _reflns.Rmerge_F_all ? _reflns.Rmerge_F_obs ? _reflns.Friedel_coverage ? _reflns.number_gt ? _reflns.threshold_expression ? _reflns.pdbx_redundancy 5.800 _reflns.pdbx_Rmerge_I_obs 0.127 _reflns.pdbx_Rmerge_I_all ? _reflns.pdbx_Rsym_value 0.127 _reflns.pdbx_netI_over_av_sigmaI ? _reflns.pdbx_netI_over_sigmaI 9.200 _reflns.pdbx_res_netI_over_av_sigmaI_2 ? _reflns.pdbx_res_netI_over_sigmaI_2 ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_d_res_high_opt ? _reflns.pdbx_d_res_low_opt ? _reflns.pdbx_d_res_opt_method ? _reflns.phase_calculation_details ? _reflns.pdbx_Rrim_I_all ? _reflns.pdbx_Rpim_I_all ? _reflns.pdbx_d_opt ? _reflns.pdbx_number_measured_all ? _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 _reflns.pdbx_CC_half ? _reflns.pdbx_R_split ? # loop_ _reflns_shell.d_res_high _reflns_shell.d_res_low _reflns_shell.meanI_over_sigI_all _reflns_shell.meanI_over_sigI_obs _reflns_shell.number_measured_all _reflns_shell.number_measured_obs _reflns_shell.number_possible _reflns_shell.number_unique_all _reflns_shell.number_unique_obs _reflns_shell.percent_possible_all _reflns_shell.percent_possible_obs _reflns_shell.Rmerge_F_all _reflns_shell.Rmerge_F_obs _reflns_shell.Rmerge_I_all _reflns_shell.Rmerge_I_obs _reflns_shell.meanI_over_sigI_gt _reflns_shell.meanI_over_uI_all _reflns_shell.meanI_over_uI_gt _reflns_shell.number_measured_gt _reflns_shell.number_unique_gt _reflns_shell.percent_possible_gt _reflns_shell.Rmerge_F_gt _reflns_shell.Rmerge_I_gt _reflns_shell.pdbx_redundancy _reflns_shell.pdbx_Rsym_value _reflns_shell.pdbx_chi_squared _reflns_shell.pdbx_netI_over_sigmaI_all _reflns_shell.pdbx_netI_over_sigmaI_obs _reflns_shell.pdbx_Rrim_I_all _reflns_shell.pdbx_Rpim_I_all _reflns_shell.pdbx_rejects _reflns_shell.pdbx_ordinal _reflns_shell.pdbx_diffrn_id _reflns_shell.pdbx_CC_half _reflns_shell.pdbx_R_split 1.800 1.900 ? ? ? ? ? ? ? 93.600 ? ? ? ? 0.351 ? ? ? ? ? ? ? ? 3.900 ? ? ? ? ? ? ? 1 1 ? ? 5.690 44.250 ? ? ? ? ? ? ? 99.700 ? ? ? ? 0.090 ? ? ? ? ? ? ? ? 6.000 ? ? ? ? ? ? ? 2 1 ? ? # _refine.aniso_B[1][1] ? _refine.aniso_B[1][2] ? _refine.aniso_B[1][3] ? _refine.aniso_B[2][2] ? _refine.aniso_B[2][3] ? _refine.aniso_B[3][3] ? _refine.B_iso_max 46.200 _refine.B_iso_mean 11.4300 _refine.B_iso_min 1.070 _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.details ? _refine.diff_density_max ? _refine.diff_density_max_esd ? _refine.diff_density_min ? _refine.diff_density_min_esd ? _refine.diff_density_rms ? _refine.diff_density_rms_esd ? _refine.entry_id 5UD8 _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.ls_abs_structure_details ? _refine.ls_abs_structure_Flack ? _refine.ls_abs_structure_Flack_esd ? _refine.ls_abs_structure_Rogers ? _refine.ls_abs_structure_Rogers_esd ? _refine.ls_d_res_high 1.8000 _refine.ls_d_res_low 44.250 _refine.ls_extinction_coef ? _refine.ls_extinction_coef_esd ? _refine.ls_extinction_expression ? _refine.ls_extinction_method ? _refine.ls_goodness_of_fit_all ? _refine.ls_goodness_of_fit_all_esd ? _refine.ls_goodness_of_fit_obs ? _refine.ls_goodness_of_fit_obs_esd ? _refine.ls_hydrogen_treatment ? _refine.ls_matrix_type ? _refine.ls_number_constraints ? _refine.ls_number_parameters ? _refine.ls_number_reflns_all ? _refine.ls_number_reflns_obs 17894 _refine.ls_number_reflns_R_free 913 _refine.ls_number_reflns_R_work ? _refine.ls_number_restraints ? _refine.ls_percent_reflns_obs 98.3500 _refine.ls_percent_reflns_R_free 5.1000 _refine.ls_R_factor_all ? _refine.ls_R_factor_obs 0.2079 _refine.ls_R_factor_R_free 0.2480 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_R_factor_R_work 0.2057 _refine.ls_R_Fsqd_factor_obs ? _refine.ls_R_I_factor_obs ? _refine.ls_redundancy_reflns_all ? _refine.ls_redundancy_reflns_obs ? _refine.ls_restrained_S_all ? _refine.ls_restrained_S_obs ? _refine.ls_shift_over_esd_max ? _refine.ls_shift_over_esd_mean ? _refine.ls_structure_factor_coef ? _refine.ls_weighting_details ? _refine.ls_weighting_scheme ? _refine.ls_wR_factor_all ? _refine.ls_wR_factor_obs ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.occupancy_max ? _refine.occupancy_min ? _refine.solvent_model_details ? _refine.solvent_model_param_bsol ? _refine.solvent_model_param_ksol ? _refine.ls_R_factor_gt ? _refine.ls_goodness_of_fit_gt ? _refine.ls_goodness_of_fit_ref ? _refine.ls_shift_over_su_max ? _refine.ls_shift_over_su_max_lt ? _refine.ls_shift_over_su_mean ? _refine.ls_shift_over_su_mean_lt ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F 1.340 _refine.pdbx_ls_sigma_Fsqd ? _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_ls_cross_valid_method 'FREE R-VALUE' _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_starting_model ? _refine.pdbx_stereochemistry_target_values ? _refine.pdbx_R_Free_selection_details ? _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.pdbx_solvent_vdw_probe_radii 1.1100 _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii 0.9000 _refine.pdbx_real_space_R ? _refine.pdbx_density_correlation ? _refine.pdbx_pd_number_of_powder_patterns ? _refine.pdbx_pd_number_of_points ? _refine.pdbx_pd_meas_number_of_points ? _refine.pdbx_pd_proc_ls_prof_R_factor ? _refine.pdbx_pd_proc_ls_prof_wR_factor ? _refine.pdbx_pd_Marquardt_correlation_coeff ? _refine.pdbx_pd_Fsqrd_R_factor ? _refine.pdbx_pd_ls_matrix_band_width ? _refine.pdbx_overall_phase_error 22.6000 _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_diffrn_id 1 _refine.overall_SU_B ? _refine.overall_SU_ML 0.1800 _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_average_fsc_overall ? _refine.pdbx_average_fsc_work ? _refine.pdbx_average_fsc_free ? # _refine_hist.cycle_id final _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.d_res_high 1.8000 _refine_hist.d_res_low 44.250 _refine_hist.pdbx_number_atoms_ligand 0 _refine_hist.number_atoms_solvent 113 _refine_hist.number_atoms_total 1744 _refine_hist.pdbx_number_residues_total 210 _refine_hist.pdbx_B_iso_mean_solvent 14.31 _refine_hist.pdbx_number_atoms_protein 1631 _refine_hist.pdbx_number_atoms_nucleic_acid 0 # loop_ _refine_ls_restr.pdbx_refine_id _refine_ls_restr.criterion _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.number _refine_ls_restr.rejects _refine_ls_restr.type _refine_ls_restr.weight _refine_ls_restr.pdbx_restraint_function 'X-RAY DIFFRACTION' ? 0.006 ? 1668 ? f_bond_d ? ? 'X-RAY DIFFRACTION' ? 1.097 ? 2259 ? f_angle_d ? ? 'X-RAY DIFFRACTION' ? 0.083 ? 261 ? f_chiral_restr ? ? 'X-RAY DIFFRACTION' ? 0.004 ? 285 ? f_plane_restr ? ? 'X-RAY DIFFRACTION' ? 15.993 ? 588 ? f_dihedral_angle_d ? ? # loop_ _refine_ls_shell.pdbx_refine_id _refine_ls_shell.d_res_high _refine_ls_shell.d_res_low _refine_ls_shell.number_reflns_all _refine_ls_shell.number_reflns_obs _refine_ls_shell.number_reflns_R_free _refine_ls_shell.number_reflns_R_work _refine_ls_shell.percent_reflns_obs _refine_ls_shell.percent_reflns_R_free _refine_ls_shell.R_factor_all _refine_ls_shell.R_factor_obs _refine_ls_shell.R_factor_R_free _refine_ls_shell.R_factor_R_free_error _refine_ls_shell.R_factor_R_work _refine_ls_shell.redundancy_reflns_all _refine_ls_shell.redundancy_reflns_obs _refine_ls_shell.wR_factor_all _refine_ls_shell.wR_factor_obs _refine_ls_shell.wR_factor_R_free _refine_ls_shell.wR_factor_R_work _refine_ls_shell.pdbx_total_number_of_bins_used _refine_ls_shell.pdbx_phase_error _refine_ls_shell.pdbx_fsc_work _refine_ls_shell.pdbx_fsc_free 'X-RAY DIFFRACTION' 1.8000 1.8949 2333 . 119 2214 92.0000 . . . 0.2556 0.0000 0.2207 . . . . . . 7 . . . 'X-RAY DIFFRACTION' 1.8949 2.0136 2489 . 130 2359 98.0000 . . . 0.2554 0.0000 0.2038 . . . . . . 7 . . . 'X-RAY DIFFRACTION' 2.0136 2.1691 2545 . 137 2408 99.0000 . . . 0.2293 0.0000 0.1906 . . . . . . 7 . . . 'X-RAY DIFFRACTION' 2.1691 2.3874 2562 . 121 2441 100.0000 . . . 0.2380 0.0000 0.2113 . . . . . . 7 . . . 'X-RAY DIFFRACTION' 2.3874 2.7328 2564 . 144 2420 100.0000 . . . 0.3219 0.0000 0.2209 . . . . . . 7 . . . 'X-RAY DIFFRACTION' 2.7328 3.4428 2639 . 127 2512 100.0000 . . . 0.2325 0.0000 0.2140 . . . . . . 7 . . . 'X-RAY DIFFRACTION' 3.4428 44.2658 2762 . 135 2627 100.0000 . . . 0.2263 0.0000 0.1937 . . . . . . 7 . . . # _struct.entry_id 5UD8 _struct.title 'Crystal Structure of Mutant Ig-like Domain' _struct.pdbx_descriptor 'Triggering receptor expressed on myeloid cells 2' _struct.pdbx_model_details 'Ig-like Domain' _struct.pdbx_formula_weight ? _struct.pdbx_formula_weight_method ? _struct.pdbx_model_type_details ? _struct.pdbx_CASP_flag N # _struct_keywords.entry_id 5UD8 _struct_keywords.text 'Ig-like domain, IMMUNE SYSTEM' _struct_keywords.pdbx_keywords 'IMMUNE SYSTEM' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 1 ? C N N 2 ? D N N 2 ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 AA1 ASN A 50 ? LEU A 57 ? ASN A 68 LEU A 75 1 ? 8 HELX_P HELX_P2 AA2 GLN A 83 ? ALA A 87 ? GLN A 101 ALA A 105 5 ? 5 HELX_P HELX_P3 AA3 GLN B 83 ? ALA B 87 ? GLN B 101 ALA B 105 5 ? 5 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf1 disulf ? ? A CYS 18 SG ? ? ? 1_555 A CYS 92 SG ? ? A CYS 36 A CYS 110 1_555 ? ? ? ? ? ? ? 2.041 ? disulf2 disulf ? ? A CYS 33 SG ? ? ? 1_555 A CYS 42 SG ? ? A CYS 51 A CYS 60 1_555 ? ? ? ? ? ? ? 2.038 ? disulf3 disulf ? ? B CYS 18 SG ? ? ? 1_555 B CYS 92 SG ? ? B CYS 36 B CYS 110 1_555 ? ? ? ? ? ? ? 2.030 ? disulf4 disulf ? ? B CYS 33 SG ? ? ? 1_555 B CYS 42 SG ? ? B CYS 51 B CYS 60 1_555 ? ? ? ? ? ? ? 2.047 ? # _struct_conn_type.id disulf _struct_conn_type.criteria ? _struct_conn_type.reference ? # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details AA1 ? 5 ? AA2 ? 3 ? AA3 ? 5 ? AA4 ? 3 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense AA1 1 2 ? parallel AA1 2 3 ? anti-parallel AA1 3 4 ? anti-parallel AA1 4 5 ? anti-parallel AA2 1 2 ? anti-parallel AA2 2 3 ? anti-parallel AA3 1 2 ? parallel AA3 2 3 ? anti-parallel AA3 3 4 ? anti-parallel AA3 4 5 ? anti-parallel AA4 1 2 ? anti-parallel AA4 2 3 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id AA1 1 THR A 3 ? VAL A 9 ? THR A 21 VAL A 27 AA1 2 GLU A 99 ? LEU A 111 ? GLU A 117 LEU A 129 AA1 3 GLY A 88 ? HIS A 96 ? GLY A 106 HIS A 114 AA1 4 LYS A 30 ? GLN A 35 ? LYS A 48 GLN A 53 AA1 5 CYS A 42 ? SER A 47 ? CYS A 60 SER A 65 AA2 1 LEU A 14 ? PRO A 19 ? LEU A 32 PRO A 37 AA2 2 THR A 74 ? LEU A 79 ? THR A 92 LEU A 97 AA2 3 ALA A 65 ? ASP A 69 ? ALA A 83 ASP A 87 AA3 1 THR B 3 ? VAL B 9 ? THR B 21 VAL B 27 AA3 2 GLU B 99 ? LEU B 111 ? GLU B 117 LEU B 129 AA3 3 GLY B 88 ? HIS B 96 ? GLY B 106 HIS B 114 AA3 4 HIS B 29 ? GLN B 35 ? HIS B 47 GLN B 53 AA3 5 CYS B 42 ? SER B 47 ? CYS B 60 SER B 65 AA4 1 LEU B 14 ? PRO B 19 ? LEU B 32 PRO B 37 AA4 2 THR B 74 ? LEU B 79 ? THR B 92 LEU B 97 AA4 3 ALA B 65 ? ASP B 69 ? ALA B 83 ASP B 87 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id AA1 1 2 N GLY A 8 ? N GLY A 26 O GLU A 109 ? O GLU A 127 AA1 2 3 O VAL A 108 ? O VAL A 126 N GLY A 88 ? N GLY A 106 AA1 3 4 O GLN A 93 ? O GLN A 111 N ALA A 31 ? N ALA A 49 AA1 4 5 N ARG A 34 ? N ARG A 52 O GLN A 43 ? O GLN A 61 AA2 1 2 N VAL A 16 ? N VAL A 34 O ILE A 77 ? O ILE A 95 AA2 2 3 O THR A 76 ? O THR A 94 N THR A 67 ? N THR A 85 AA3 1 2 N GLY B 8 ? N GLY B 26 O LEU B 111 ? O LEU B 129 AA3 2 3 O LEU B 103 ? O LEU B 121 N CYS B 92 ? N CYS B 110 AA3 3 4 O LEU B 95 ? O LEU B 113 N HIS B 29 ? N HIS B 47 AA3 4 5 N ARG B 34 ? N ARG B 52 O GLN B 43 ? O GLN B 61 AA4 1 2 N VAL B 16 ? N VAL B 34 O ILE B 77 ? O ILE B 95 AA4 2 3 O THR B 76 ? O THR B 94 N THR B 67 ? N THR B 85 # _atom_sites.entry_id 5UD8 _atom_sites.fract_transf_matrix[1][1] 0.042034 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.015992 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.007983 _atom_sites.fract_transf_vector[1] 0.000000 _atom_sites.fract_transf_vector[2] 0.000000 _atom_sites.fract_transf_vector[3] 0.000000 # loop_ _atom_type.symbol C N O S # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 HIS 1 19 19 HIS HIS A . n A 1 2 ASN 2 20 20 ASN ASN A . n A 1 3 THR 3 21 21 THR THR A . n A 1 4 THR 4 22 22 THR THR A . n A 1 5 VAL 5 23 23 VAL VAL A . n A 1 6 PHE 6 24 24 PHE PHE A . n A 1 7 GLN 7 25 25 GLN GLN A . n A 1 8 GLY 8 26 26 GLY GLY A . n A 1 9 VAL 9 27 27 VAL VAL A . n A 1 10 ALA 10 28 28 ALA ALA A . n A 1 11 GLY 11 29 29 GLY GLY A . n A 1 12 GLN 12 30 30 GLN GLN A . n A 1 13 SER 13 31 31 SER SER A . n A 1 14 LEU 14 32 32 LEU LEU A . n A 1 15 GLN 15 33 33 GLN GLN A . n A 1 16 VAL 16 34 34 VAL VAL A . n A 1 17 SER 17 35 35 SER SER A . n A 1 18 CYS 18 36 36 CYS CYS A . n A 1 19 PRO 19 37 37 PRO PRO A . n A 1 20 TYR 20 38 38 TYR TYR A . n A 1 21 ASP 21 39 39 ASP ASP A . n A 1 22 SER 22 40 40 SER SER A . n A 1 23 MET 23 41 41 MET MET A . n A 1 24 LYS 24 42 42 LYS LYS A . n A 1 25 HIS 25 43 43 HIS HIS A . n A 1 26 TRP 26 44 44 TRP TRP A . n A 1 27 GLY 27 45 45 GLY GLY A . n A 1 28 ARG 28 46 46 ARG ARG A . n A 1 29 HIS 29 47 47 HIS HIS A . n A 1 30 LYS 30 48 48 LYS LYS A . n A 1 31 ALA 31 49 49 ALA ALA A . n A 1 32 TRP 32 50 50 TRP TRP A . n A 1 33 CYS 33 51 51 CYS CYS A . n A 1 34 ARG 34 52 52 ARG ARG A . n A 1 35 GLN 35 53 53 GLN GLN A . n A 1 36 LEU 36 54 54 LEU LEU A . n A 1 37 GLY 37 55 55 GLY GLY A . n A 1 38 GLU 38 56 56 GLU GLU A . n A 1 39 LYS 39 57 57 LYS LYS A . n A 1 40 GLY 40 58 58 GLY GLY A . n A 1 41 PRO 41 59 59 PRO PRO A . n A 1 42 CYS 42 60 60 CYS CYS A . n A 1 43 GLN 43 61 61 GLN GLN A . n A 1 44 ARG 44 62 62 ARG ARG A . n A 1 45 VAL 45 63 63 VAL VAL A . n A 1 46 VAL 46 64 64 VAL VAL A . n A 1 47 SER 47 65 65 SER SER A . n A 1 48 THR 48 66 66 THR THR A . n A 1 49 HIS 49 67 67 HIS HIS A . n A 1 50 ASN 50 68 68 ASN ASN A . n A 1 51 LEU 51 69 69 LEU LEU A . n A 1 52 TRP 52 70 70 TRP TRP A . n A 1 53 LEU 53 71 71 LEU LEU A . n A 1 54 LEU 54 72 72 LEU LEU A . n A 1 55 SER 55 73 73 SER SER A . n A 1 56 PHE 56 74 74 PHE PHE A . n A 1 57 LEU 57 75 75 LEU LEU A . n A 1 58 ARG 58 76 ? ? ? A . n A 1 59 ARG 59 77 ? ? ? A . n A 1 60 TRP 60 78 ? ? ? A . n A 1 61 ASN 61 79 ? ? ? A . n A 1 62 GLY 62 80 ? ? ? A . n A 1 63 SER 63 81 ? ? ? A . n A 1 64 THR 64 82 82 THR THR A . n A 1 65 ALA 65 83 83 ALA ALA A . n A 1 66 ILE 66 84 84 ILE ILE A . n A 1 67 THR 67 85 85 THR THR A . n A 1 68 ASP 68 86 86 ASP ASP A . n A 1 69 ASP 69 87 87 ASP ASP A . n A 1 70 THR 70 88 88 THR THR A . n A 1 71 LEU 71 89 89 LEU LEU A . n A 1 72 GLY 72 90 90 GLY GLY A . n A 1 73 GLY 73 91 91 GLY GLY A . n A 1 74 THR 74 92 92 THR THR A . n A 1 75 LEU 75 93 93 LEU LEU A . n A 1 76 THR 76 94 94 THR THR A . n A 1 77 ILE 77 95 95 ILE ILE A . n A 1 78 THR 78 96 96 THR THR A . n A 1 79 LEU 79 97 97 LEU LEU A . n A 1 80 ARG 80 98 98 ARG ARG A . n A 1 81 ASN 81 99 99 ASN ASN A . n A 1 82 LEU 82 100 100 LEU LEU A . n A 1 83 GLN 83 101 101 GLN GLN A . n A 1 84 PRO 84 102 102 PRO PRO A . n A 1 85 HIS 85 103 103 HIS HIS A . n A 1 86 ASP 86 104 104 ASP ASP A . n A 1 87 ALA 87 105 105 ALA ALA A . n A 1 88 GLY 88 106 106 GLY GLY A . n A 1 89 LEU 89 107 107 LEU LEU A . n A 1 90 TYR 90 108 108 TYR TYR A . n A 1 91 GLN 91 109 109 GLN GLN A . n A 1 92 CYS 92 110 110 CYS CYS A . n A 1 93 GLN 93 111 111 GLN GLN A . n A 1 94 SER 94 112 112 SER SER A . n A 1 95 LEU 95 113 113 LEU LEU A . n A 1 96 HIS 96 114 114 HIS HIS A . n A 1 97 GLY 97 115 115 GLY GLY A . n A 1 98 SER 98 116 116 SER SER A . n A 1 99 GLU 99 117 117 GLU GLU A . n A 1 100 ALA 100 118 118 ALA ALA A . n A 1 101 ASP 101 119 119 ASP ASP A . n A 1 102 THR 102 120 120 THR THR A . n A 1 103 LEU 103 121 121 LEU LEU A . n A 1 104 ARG 104 122 122 ARG ARG A . n A 1 105 LYS 105 123 123 LYS LYS A . n A 1 106 VAL 106 124 124 VAL VAL A . n A 1 107 LEU 107 125 125 LEU LEU A . n A 1 108 VAL 108 126 126 VAL VAL A . n A 1 109 GLU 109 127 127 GLU GLU A . n A 1 110 VAL 110 128 128 VAL VAL A . n A 1 111 LEU 111 129 129 LEU LEU A . n A 1 112 ALA 112 130 130 ALA ALA A . n B 1 1 HIS 1 19 19 HIS HIS B . n B 1 2 ASN 2 20 20 ASN ASN B . n B 1 3 THR 3 21 21 THR THR B . n B 1 4 THR 4 22 22 THR THR B . n B 1 5 VAL 5 23 23 VAL VAL B . n B 1 6 PHE 6 24 24 PHE PHE B . n B 1 7 GLN 7 25 25 GLN GLN B . n B 1 8 GLY 8 26 26 GLY GLY B . n B 1 9 VAL 9 27 27 VAL VAL B . n B 1 10 ALA 10 28 28 ALA ALA B . n B 1 11 GLY 11 29 29 GLY GLY B . n B 1 12 GLN 12 30 30 GLN GLN B . n B 1 13 SER 13 31 31 SER SER B . n B 1 14 LEU 14 32 32 LEU LEU B . n B 1 15 GLN 15 33 33 GLN GLN B . n B 1 16 VAL 16 34 34 VAL VAL B . n B 1 17 SER 17 35 35 SER SER B . n B 1 18 CYS 18 36 36 CYS CYS B . n B 1 19 PRO 19 37 37 PRO PRO B . n B 1 20 TYR 20 38 38 TYR TYR B . n B 1 21 ASP 21 39 39 ASP ASP B . n B 1 22 SER 22 40 40 SER SER B . n B 1 23 MET 23 41 41 MET MET B . n B 1 24 LYS 24 42 42 LYS LYS B . n B 1 25 HIS 25 43 43 HIS HIS B . n B 1 26 TRP 26 44 44 TRP TRP B . n B 1 27 GLY 27 45 45 GLY GLY B . n B 1 28 ARG 28 46 46 ARG ARG B . n B 1 29 HIS 29 47 47 HIS HIS B . n B 1 30 LYS 30 48 48 LYS LYS B . n B 1 31 ALA 31 49 49 ALA ALA B . n B 1 32 TRP 32 50 50 TRP TRP B . n B 1 33 CYS 33 51 51 CYS CYS B . n B 1 34 ARG 34 52 52 ARG ARG B . n B 1 35 GLN 35 53 53 GLN GLN B . n B 1 36 LEU 36 54 54 LEU LEU B . n B 1 37 GLY 37 55 55 GLY GLY B . n B 1 38 GLU 38 56 56 GLU GLU B . n B 1 39 LYS 39 57 57 LYS LYS B . n B 1 40 GLY 40 58 58 GLY GLY B . n B 1 41 PRO 41 59 59 PRO PRO B . n B 1 42 CYS 42 60 60 CYS CYS B . n B 1 43 GLN 43 61 61 GLN GLN B . n B 1 44 ARG 44 62 62 ARG ARG B . n B 1 45 VAL 45 63 63 VAL VAL B . n B 1 46 VAL 46 64 64 VAL VAL B . n B 1 47 SER 47 65 65 SER SER B . n B 1 48 THR 48 66 66 THR THR B . n B 1 49 HIS 49 67 67 HIS HIS B . n B 1 50 ASN 50 68 68 ASN ASN B . n B 1 51 LEU 51 69 69 LEU LEU B . n B 1 52 TRP 52 70 70 TRP TRP B . n B 1 53 LEU 53 71 71 LEU LEU B . n B 1 54 LEU 54 72 72 LEU LEU B . n B 1 55 SER 55 73 73 SER SER B . n B 1 56 PHE 56 74 ? ? ? B . n B 1 57 LEU 57 75 ? ? ? B . n B 1 58 ARG 58 76 ? ? ? B . n B 1 59 ARG 59 77 ? ? ? B . n B 1 60 TRP 60 78 ? ? ? B . n B 1 61 ASN 61 79 ? ? ? B . n B 1 62 GLY 62 80 ? ? ? B . n B 1 63 SER 63 81 ? ? ? B . n B 1 64 THR 64 82 82 THR THR B . n B 1 65 ALA 65 83 83 ALA ALA B . n B 1 66 ILE 66 84 84 ILE ILE B . n B 1 67 THR 67 85 85 THR THR B . n B 1 68 ASP 68 86 86 ASP ASP B . n B 1 69 ASP 69 87 87 ASP ASP B . n B 1 70 THR 70 88 88 THR THR B . n B 1 71 LEU 71 89 89 LEU LEU B . n B 1 72 GLY 72 90 90 GLY GLY B . n B 1 73 GLY 73 91 91 GLY GLY B . n B 1 74 THR 74 92 92 THR THR B . n B 1 75 LEU 75 93 93 LEU LEU B . n B 1 76 THR 76 94 94 THR THR B . n B 1 77 ILE 77 95 95 ILE ILE B . n B 1 78 THR 78 96 96 THR THR B . n B 1 79 LEU 79 97 97 LEU LEU B . n B 1 80 ARG 80 98 98 ARG ARG B . n B 1 81 ASN 81 99 99 ASN ASN B . n B 1 82 LEU 82 100 100 LEU LEU B . n B 1 83 GLN 83 101 101 GLN GLN B . n B 1 84 PRO 84 102 102 PRO PRO B . n B 1 85 HIS 85 103 103 HIS HIS B . n B 1 86 ASP 86 104 104 ASP ASP B . n B 1 87 ALA 87 105 105 ALA ALA B . n B 1 88 GLY 88 106 106 GLY GLY B . n B 1 89 LEU 89 107 107 LEU LEU B . n B 1 90 TYR 90 108 108 TYR TYR B . n B 1 91 GLN 91 109 109 GLN GLN B . n B 1 92 CYS 92 110 110 CYS CYS B . n B 1 93 GLN 93 111 111 GLN GLN B . n B 1 94 SER 94 112 112 SER SER B . n B 1 95 LEU 95 113 113 LEU LEU B . n B 1 96 HIS 96 114 114 HIS HIS B . n B 1 97 GLY 97 115 115 GLY GLY B . n B 1 98 SER 98 116 116 SER SER B . n B 1 99 GLU 99 117 117 GLU GLU B . n B 1 100 ALA 100 118 118 ALA ALA B . n B 1 101 ASP 101 119 119 ASP ASP B . n B 1 102 THR 102 120 120 THR THR B . n B 1 103 LEU 103 121 121 LEU LEU B . n B 1 104 ARG 104 122 122 ARG ARG B . n B 1 105 LYS 105 123 123 LYS LYS B . n B 1 106 VAL 106 124 124 VAL VAL B . n B 1 107 LEU 107 125 125 LEU LEU B . n B 1 108 VAL 108 126 126 VAL VAL B . n B 1 109 GLU 109 127 127 GLU GLU B . n B 1 110 VAL 110 128 128 VAL VAL B . n B 1 111 LEU 111 129 129 LEU LEU B . n B 1 112 ALA 112 130 130 ALA ALA B . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 HOH 1 201 112 HOH HOH A . C 2 HOH 2 202 99 HOH HOH A . C 2 HOH 3 203 109 HOH HOH A . C 2 HOH 4 204 90 HOH HOH A . C 2 HOH 5 205 88 HOH HOH A . C 2 HOH 6 206 62 HOH HOH A . C 2 HOH 7 207 70 HOH HOH A . C 2 HOH 8 208 53 HOH HOH A . C 2 HOH 9 209 89 HOH HOH A . C 2 HOH 10 210 34 HOH HOH A . C 2 HOH 11 211 7 HOH HOH A . C 2 HOH 12 212 15 HOH HOH A . C 2 HOH 13 213 72 HOH HOH A . C 2 HOH 14 214 45 HOH HOH A . C 2 HOH 15 215 87 HOH HOH A . C 2 HOH 16 216 107 HOH HOH A . C 2 HOH 17 217 95 HOH HOH A . C 2 HOH 18 218 24 HOH HOH A . C 2 HOH 19 219 9 HOH HOH A . C 2 HOH 20 220 18 HOH HOH A . C 2 HOH 21 221 82 HOH HOH A . C 2 HOH 22 222 49 HOH HOH A . C 2 HOH 23 223 22 HOH HOH A . C 2 HOH 24 224 23 HOH HOH A . C 2 HOH 25 225 55 HOH HOH A . C 2 HOH 26 226 3 HOH HOH A . C 2 HOH 27 227 79 HOH HOH A . C 2 HOH 28 228 66 HOH HOH A . C 2 HOH 29 229 106 HOH HOH A . C 2 HOH 30 230 13 HOH HOH A . C 2 HOH 31 231 61 HOH HOH A . C 2 HOH 32 232 32 HOH HOH A . C 2 HOH 33 233 10 HOH HOH A . C 2 HOH 34 234 84 HOH HOH A . C 2 HOH 35 235 6 HOH HOH A . C 2 HOH 36 236 17 HOH HOH A . C 2 HOH 37 237 85 HOH HOH A . C 2 HOH 38 238 21 HOH HOH A . C 2 HOH 39 239 37 HOH HOH A . C 2 HOH 40 240 71 HOH HOH A . C 2 HOH 41 241 105 HOH HOH A . C 2 HOH 42 242 8 HOH HOH A . C 2 HOH 43 243 44 HOH HOH A . C 2 HOH 44 244 1 HOH HOH A . C 2 HOH 45 245 51 HOH HOH A . C 2 HOH 46 246 104 HOH HOH A . C 2 HOH 47 247 47 HOH HOH A . C 2 HOH 48 248 27 HOH HOH A . C 2 HOH 49 249 92 HOH HOH A . C 2 HOH 50 250 86 HOH HOH A . C 2 HOH 51 251 43 HOH HOH A . C 2 HOH 52 252 64 HOH HOH A . C 2 HOH 53 253 35 HOH HOH A . C 2 HOH 54 254 73 HOH HOH A . C 2 HOH 55 255 102 HOH HOH A . C 2 HOH 56 256 29 HOH HOH A . C 2 HOH 57 257 76 HOH HOH A . C 2 HOH 58 258 40 HOH HOH A . C 2 HOH 59 259 110 HOH HOH A . D 2 HOH 1 201 74 HOH HOH B . D 2 HOH 2 202 101 HOH HOH B . D 2 HOH 3 203 100 HOH HOH B . D 2 HOH 4 204 36 HOH HOH B . D 2 HOH 5 205 38 HOH HOH B . D 2 HOH 6 206 16 HOH HOH B . D 2 HOH 7 207 11 HOH HOH B . D 2 HOH 8 208 97 HOH HOH B . D 2 HOH 9 209 80 HOH HOH B . D 2 HOH 10 210 30 HOH HOH B . D 2 HOH 11 211 42 HOH HOH B . D 2 HOH 12 212 14 HOH HOH B . D 2 HOH 13 213 39 HOH HOH B . D 2 HOH 14 214 48 HOH HOH B . D 2 HOH 15 215 65 HOH HOH B . D 2 HOH 16 216 108 HOH HOH B . D 2 HOH 17 217 58 HOH HOH B . D 2 HOH 18 218 111 HOH HOH B . D 2 HOH 19 219 57 HOH HOH B . D 2 HOH 20 220 54 HOH HOH B . D 2 HOH 21 221 33 HOH HOH B . D 2 HOH 22 222 50 HOH HOH B . D 2 HOH 23 223 91 HOH HOH B . D 2 HOH 24 224 93 HOH HOH B . D 2 HOH 25 225 19 HOH HOH B . D 2 HOH 26 226 67 HOH HOH B . D 2 HOH 27 227 4 HOH HOH B . D 2 HOH 28 228 31 HOH HOH B . D 2 HOH 29 229 63 HOH HOH B . D 2 HOH 30 230 28 HOH HOH B . D 2 HOH 31 231 26 HOH HOH B . D 2 HOH 32 232 60 HOH HOH B . D 2 HOH 33 233 81 HOH HOH B . D 2 HOH 34 234 56 HOH HOH B . D 2 HOH 35 235 12 HOH HOH B . D 2 HOH 36 236 113 HOH HOH B . D 2 HOH 37 237 59 HOH HOH B . D 2 HOH 38 238 69 HOH HOH B . D 2 HOH 39 239 20 HOH HOH B . D 2 HOH 40 240 2 HOH HOH B . D 2 HOH 41 241 52 HOH HOH B . D 2 HOH 42 242 41 HOH HOH B . D 2 HOH 43 243 68 HOH HOH B . D 2 HOH 44 244 5 HOH HOH B . D 2 HOH 45 245 25 HOH HOH B . D 2 HOH 46 246 46 HOH HOH B . D 2 HOH 47 247 98 HOH HOH B . D 2 HOH 48 248 78 HOH HOH B . D 2 HOH 49 249 83 HOH HOH B . D 2 HOH 50 250 103 HOH HOH B . D 2 HOH 51 251 94 HOH HOH B . D 2 HOH 52 252 75 HOH HOH B . D 2 HOH 53 253 77 HOH HOH B . D 2 HOH 54 254 96 HOH HOH B . # loop_ _pdbx_struct_assembly.id _pdbx_struct_assembly.details _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count 1 author_defined_assembly ? monomeric 1 2 author_defined_assembly ? monomeric 1 # loop_ _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression _pdbx_struct_assembly_gen.asym_id_list 1 1 A,C 2 1 B,D # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2018-04-04 2 'Structure model' 1 1 2019-04-17 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Data collection' 2 2 'Structure model' 'Database references' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 2 'Structure model' citation 2 2 'Structure model' citation_author # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 2 'Structure model' '_citation.country' 2 2 'Structure model' '_citation.journal_abbrev' 3 2 'Structure model' '_citation.journal_id_ASTM' 4 2 'Structure model' '_citation.journal_id_CSD' 5 2 'Structure model' '_citation.journal_id_ISSN' 6 2 'Structure model' '_citation.journal_volume' 7 2 'Structure model' '_citation.page_first' 8 2 'Structure model' '_citation.page_last' 9 2 'Structure model' '_citation.pdbx_database_id_DOI' 10 2 'Structure model' '_citation.pdbx_database_id_PubMed' 11 2 'Structure model' '_citation.title' 12 2 'Structure model' '_citation.year' # loop_ _software.citation_id _software.classification _software.compiler_name _software.compiler_version _software.contact_author _software.contact_author_email _software.date _software.description _software.dependencies _software.hardware _software.language _software.location _software.mods _software.name _software.os _software.os_version _software.type _software.version _software.pdbx_ordinal ? 'data collection' ? ? ? ? ? ? ? ? ? ? ? MOSFLM ? ? ? . 1 ? 'data scaling' ? ? ? ? ? ? ? ? ? ? ? SCALA ? ? ? 3.3.20 2 ? refinement ? ? ? ? ? ? ? ? ? ? ? PHENIX ? ? ? . 3 ? 'data extraction' ? ? ? ? ? ? ? ? ? ? ? PDB_EXTRACT ? ? ? 3.22 4 ? 'data reduction' ? ? ? ? ? ? ? ? ? ? ? MOSFLM ? ? ? . 5 # _pdbx_validate_symm_contact.id 1 _pdbx_validate_symm_contact.PDB_model_num 1 _pdbx_validate_symm_contact.auth_atom_id_1 NZ _pdbx_validate_symm_contact.auth_asym_id_1 A _pdbx_validate_symm_contact.auth_comp_id_1 LYS _pdbx_validate_symm_contact.auth_seq_id_1 57 _pdbx_validate_symm_contact.PDB_ins_code_1 ? _pdbx_validate_symm_contact.label_alt_id_1 ? _pdbx_validate_symm_contact.site_symmetry_1 1_555 _pdbx_validate_symm_contact.auth_atom_id_2 OE1 _pdbx_validate_symm_contact.auth_asym_id_2 B _pdbx_validate_symm_contact.auth_comp_id_2 GLU _pdbx_validate_symm_contact.auth_seq_id_2 56 _pdbx_validate_symm_contact.PDB_ins_code_2 ? _pdbx_validate_symm_contact.label_alt_id_2 ? _pdbx_validate_symm_contact.site_symmetry_2 1_545 _pdbx_validate_symm_contact.dist 2.12 # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A ARG 76 ? A ARG 58 2 1 Y 1 A ARG 77 ? A ARG 59 3 1 Y 1 A TRP 78 ? A TRP 60 4 1 Y 1 A ASN 79 ? A ASN 61 5 1 Y 1 A GLY 80 ? A GLY 62 6 1 Y 1 A SER 81 ? A SER 63 7 1 Y 1 B PHE 74 ? B PHE 56 8 1 Y 1 B LEU 75 ? B LEU 57 9 1 Y 1 B ARG 76 ? B ARG 58 10 1 Y 1 B ARG 77 ? B ARG 59 11 1 Y 1 B TRP 78 ? B TRP 60 12 1 Y 1 B ASN 79 ? B ASN 61 13 1 Y 1 B GLY 80 ? B GLY 62 14 1 Y 1 B SER 81 ? B SER 63 # _pdbx_entity_nonpoly.entity_id 2 _pdbx_entity_nonpoly.name water _pdbx_entity_nonpoly.comp_id HOH #