HEADER HYDROLASE/HYDROLASE INHIBITOR 29-DEC-16 5UE4
TITLE PROMMP-9DESFNII COMPLEXED TO JNJ0966 INHIBITOR
COMPND MOL_ID: 1;
COMPND 2 MOLECULE: MATRIX METALLOPROTEINASE-9;
COMPND 3 CHAIN: A, B;
COMPND 4 SYNONYM: MMP-9,92 KDA GELATINASE,92 KDA TYPE IV COLLAGENASE,
COMPND 5 GELATINASE B,GELB,MMP-9,92 KDA GELATINASE,92 KDA TYPE IV COLLAGENASE,
COMPND 6 GELATINASE B,GELB;
COMPND 7 EC: 3.4.24.35;
COMPND 8 ENGINEERED: YES
SOURCE MOL_ID: 1;
SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS;
SOURCE 3 ORGANISM_COMMON: HUMAN;
SOURCE 4 ORGANISM_TAXID: 9606;
SOURCE 5 GENE: MMP9, CLG4B;
SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI;
SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562
KEYWDS PROMMP9, ZYMOGEN, HYDROLASE, HYDROLASE-HYDROLASE INHIBITOR COMPLEX
EXPDTA X-RAY DIFFRACTION
AUTHOR R.S.ALEXANDER,J.SPURLINO,C.MILLIGAN
REVDAT 3 06-MAR-24 5UE4 1 LINK
REVDAT 2 08-NOV-17 5UE4 1 JRNL
REVDAT 1 13-SEP-17 5UE4 0
JRNL AUTH R.H.SCANNEVIN,R.ALEXANDER,T.M.HAARLANDER,S.L.BURKE,M.SINGER,
JRNL AUTH 2 C.HUO,Y.M.ZHANG,D.MAGUIRE,J.SPURLINO,I.DECKMAN,K.I.CARROLL,
JRNL AUTH 3 F.LEWANDOWSKI,E.DEVINE,K.DZORDZORME,B.TOUNGE,C.MILLIGAN,
JRNL AUTH 4 S.BAYOUMY,R.WILLIAMS,C.SCHALK-HIHI,K.LEONARD,P.JACKSON,
JRNL AUTH 5 M.TODD,L.C.KUO,K.J.RHODES
JRNL TITL DISCOVERY OF A HIGHLY SELECTIVE CHEMICAL INHIBITOR OF MATRIX
JRNL TITL 2 METALLOPROTEINASE-9 (MMP-9) THAT ALLOSTERICALLY INHIBITS
JRNL TITL 3 ZYMOGEN ACTIVATION.
JRNL REF J. BIOL. CHEM. V. 292 17963 2017
JRNL REFN ESSN 1083-351X
JRNL PMID 28860188
JRNL DOI 10.1074/JBC.M117.806075
REMARK 2
REMARK 2 RESOLUTION. 1.80 ANGSTROMS.
REMARK 3
REMARK 3 REFINEMENT.
REMARK 3 PROGRAM : PHENIX
REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN
REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE,
REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER,
REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY,
REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON,
REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI,
REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT
REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART
REMARK 3
REMARK 3 REFINEMENT TARGET : NULL
REMARK 3
REMARK 3 DATA USED IN REFINEMENT.
REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.80
REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 43.00
REMARK 3 MIN(FOBS/SIGMA_FOBS) : NULL
REMARK 3 COMPLETENESS FOR RANGE (%) : 99.7
REMARK 3 NUMBER OF REFLECTIONS : 44303
REMARK 3
REMARK 3 FIT TO DATA USED IN REFINEMENT.
REMARK 3 R VALUE (WORKING + TEST SET) : 0.200
REMARK 3 R VALUE (WORKING SET) : 0.199
REMARK 3 FREE R VALUE : 0.224
REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.510
REMARK 3 FREE R VALUE TEST SET COUNT : 2000
REMARK 3
REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS).
REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE
REMARK 3
REMARK 3 BULK SOLVENT MODELLING.
REMARK 3 METHOD USED : NULL
REMARK 3 SOLVENT RADIUS : NULL
REMARK 3 SHRINKAGE RADIUS : NULL
REMARK 3 K_SOL : NULL
REMARK 3 B_SOL : NULL
REMARK 3
REMARK 3 ERROR ESTIMATES.
REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : NULL
REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : NULL
REMARK 3
REMARK 3 B VALUES.
REMARK 3 FROM WILSON PLOT (A**2) : NULL
REMARK 3 MEAN B VALUE (OVERALL, A**2) : 32.84
REMARK 3 OVERALL ANISOTROPIC B VALUE.
REMARK 3 B11 (A**2) : NULL
REMARK 3 B22 (A**2) : NULL
REMARK 3 B33 (A**2) : NULL
REMARK 3 B12 (A**2) : NULL
REMARK 3 B13 (A**2) : NULL
REMARK 3 B23 (A**2) : NULL
REMARK 3
REMARK 3 TWINNING INFORMATION.
REMARK 3 FRACTION: NULL
REMARK 3 OPERATOR: NULL
REMARK 3
REMARK 3 DEVIATIONS FROM IDEAL VALUES.
REMARK 3 RMSD COUNT
REMARK 3 BOND : NULL NULL
REMARK 3 ANGLE : NULL NULL
REMARK 3 CHIRALITY : NULL NULL
REMARK 3 PLANARITY : NULL NULL
REMARK 3 DIHEDRAL : NULL NULL
REMARK 3
REMARK 3 TLS DETAILS
REMARK 3 NUMBER OF TLS GROUPS : NULL
REMARK 3
REMARK 3 NCS DETAILS
REMARK 3 NUMBER OF NCS GROUPS : NULL
REMARK 3
REMARK 3 OTHER REFINEMENT REMARKS: NULL
REMARK 4
REMARK 4 5UE4 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11
REMARK 100
REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 05-JAN-17.
REMARK 100 THE DEPOSITION ID IS D_1000225725.
REMARK 200
REMARK 200 EXPERIMENTAL DETAILS
REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION
REMARK 200 DATE OF DATA COLLECTION : 23-AUG-10
REMARK 200 TEMPERATURE (KELVIN) : 100
REMARK 200 PH : 5.5
REMARK 200 NUMBER OF CRYSTALS USED : 1
REMARK 200
REMARK 200 SYNCHROTRON (Y/N) : Y
REMARK 200 RADIATION SOURCE : APS
REMARK 200 BEAMLINE : 17-ID
REMARK 200 X-RAY GENERATOR MODEL : NULL
REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M
REMARK 200 WAVELENGTH OR RANGE (A) : 1
REMARK 200 MONOCHROMATOR : NULL
REMARK 200 OPTICS : NULL
REMARK 200
REMARK 200 DETECTOR TYPE : PIXEL
REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS3 6M
REMARK 200 INTENSITY-INTEGRATION SOFTWARE : NULL
REMARK 200 DATA SCALING SOFTWARE : D*TREK
REMARK 200
REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 44322
REMARK 200 RESOLUTION RANGE HIGH (A) : 1.800
REMARK 200 RESOLUTION RANGE LOW (A) : 43.000
REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL
REMARK 200
REMARK 200 OVERALL.
REMARK 200 COMPLETENESS FOR RANGE (%) : 99.7
REMARK 200 DATA REDUNDANCY : 3.250
REMARK 200 R MERGE (I) : 0.05200
REMARK 200 R SYM (I) : NULL
REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 10.5000
REMARK 200
REMARK 200 IN THE HIGHEST RESOLUTION SHELL.
REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL
REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL
REMARK 200 COMPLETENESS FOR SHELL (%) : NULL
REMARK 200 DATA REDUNDANCY IN SHELL : NULL
REMARK 200 R MERGE FOR SHELL (I) : NULL
REMARK 200 R SYM FOR SHELL (I) : NULL
REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL
REMARK 200
REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH
REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: NULL
REMARK 200 SOFTWARE USED: NULL
REMARK 200 STARTING MODEL: NULL
REMARK 200
REMARK 200 REMARK: NULL
REMARK 280
REMARK 280 CRYSTAL
REMARK 280 SOLVENT CONTENT, VS (%): 45.99
REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.28
REMARK 280
REMARK 280 CRYSTALLIZATION CONDITIONS: 25% PEG 8K 1% GLYCEROL 0.2 M AMMONIUM
REMARK 280 SULFATE 100 MM NACACODYLATE, PH 5.5, VAPOR DIFFUSION,
REMARK 280 TEMPERATURE 293K
REMARK 290
REMARK 290 CRYSTALLOGRAPHIC SYMMETRY
REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1
REMARK 290
REMARK 290 SYMOP SYMMETRY
REMARK 290 NNNMMM OPERATOR
REMARK 290 1555 X,Y,Z
REMARK 290 2555 -X,Y,-Z
REMARK 290 3555 X+1/2,Y+1/2,Z
REMARK 290 4555 -X+1/2,Y+1/2,-Z
REMARK 290
REMARK 290 WHERE NNN -> OPERATOR NUMBER
REMARK 290 MMM -> TRANSLATION VECTOR
REMARK 290
REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS
REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM
REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY
REMARK 290 RELATED MOLECULES.
REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000
REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000
REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000
REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000
REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000
REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000
REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 44.91000
REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 36.47250
REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000
REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 44.91000
REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 36.47250
REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000
REMARK 290
REMARK 290 REMARK: NULL
REMARK 300
REMARK 300 BIOMOLECULE: 1, 2, 3
REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM
REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN
REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON
REMARK 300 BURIED SURFACE AREA.
REMARK 350
REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN
REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE
REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS
REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND
REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN.
REMARK 350
REMARK 350 BIOMOLECULE: 1
REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC
REMARK 350 APPLY THE FOLLOWING TO CHAINS: A
REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000
REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000
REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000
REMARK 350
REMARK 350 BIOMOLECULE: 2
REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC
REMARK 350 APPLY THE FOLLOWING TO CHAINS: B
REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000
REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000
REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000
REMARK 350
REMARK 350 BIOMOLECULE: 3
REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC
REMARK 350 SOFTWARE USED: PISA
REMARK 350 TOTAL BURIED SURFACE AREA: 2000 ANGSTROM**2
REMARK 350 SURFACE AREA OF THE COMPLEX: 20030 ANGSTROM**2
REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -86.0 KCAL/MOL
REMARK 350 APPLY THE FOLLOWING TO CHAINS: A
REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000
REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000
REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000
REMARK 350 APPLY THE FOLLOWING TO CHAINS: B
REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 67.26688
REMARK 350 BIOMT2 2 0.000000 1.000000 0.000000 0.00000
REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 74.18452
REMARK 375
REMARK 375 SPECIAL POSITION
REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS
REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL
REMARK 375 POSITIONS.
REMARK 375
REMARK 375 ATOM RES CSSEQI
REMARK 375 HOH A 551 LIES ON A SPECIAL POSITION.
REMARK 465
REMARK 465 MISSING RESIDUES
REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE
REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN
REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.)
REMARK 465
REMARK 465 M RES C SSSEQI
REMARK 465 LEU A 35
REMARK 465 ARG A 36
REMARK 465 THR A 37
REMARK 465 ASN A 38
REMARK 465 LEU A 39
REMARK 465 SER A 64
REMARK 465 LYS A 65
REMARK 465 GLY A 269
REMARK 465 PRO A 270
REMARK 465 LEU B 35
REMARK 465 ARG B 36
REMARK 465 THR B 37
REMARK 465 ASN B 38
REMARK 465 LEU B 39
REMARK 465 THR B 40
REMARK 465 MET B 60
REMARK 465 ARG B 61
REMARK 465 GLY B 62
REMARK 465 GLU B 63
REMARK 465 SER B 64
REMARK 465 LYS B 65
REMARK 465 PHE B 107
REMARK 465 GLN B 108
REMARK 465 THR B 109
REMARK 465 PRO B 270
REMARK 500
REMARK 500 GEOMETRY AND STEREOCHEMISTRY
REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT
REMARK 500
REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT.
REMARK 500
REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE
REMARK 500 O HOH B 422 O HOH B 495 2.14
REMARK 500 O HOH A 462 O HOH A 561 2.18
REMARK 500
REMARK 500 REMARK: NULL
REMARK 500
REMARK 500 GEOMETRY AND STEREOCHEMISTRY
REMARK 500 SUBTOPIC: CLOSE CONTACTS
REMARK 500
REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC
REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15
REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A
REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375
REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE
REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS.
REMARK 500
REMARK 500 DISTANCE CUTOFF:
REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS
REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS
REMARK 500
REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE
REMARK 500 O HOH A 535 O HOH B 503 2656 2.14
REMARK 500
REMARK 500 REMARK: NULL
REMARK 500
REMARK 500 GEOMETRY AND STEREOCHEMISTRY
REMARK 500 SUBTOPIC: COVALENT BOND ANGLES
REMARK 500
REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES
REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE
REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN
REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE).
REMARK 500
REMARK 500 STANDARD TABLE:
REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1)
REMARK 500
REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999
REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996
REMARK 500
REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3
REMARK 500 ARG A 98 NE - CZ - NH1 ANGL. DEV. = 3.6 DEGREES
REMARK 500 ARG A 98 NE - CZ - NH2 ANGL. DEV. = -4.1 DEGREES
REMARK 500
REMARK 500 REMARK: NULL
REMARK 500
REMARK 500 GEOMETRY AND STEREOCHEMISTRY
REMARK 500 SUBTOPIC: TORSION ANGLES
REMARK 500
REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS:
REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER;
REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE).
REMARK 500
REMARK 500 STANDARD TABLE:
REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2)
REMARK 500
REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI-
REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400
REMARK 500
REMARK 500 M RES CSSEQI PSI PHI
REMARK 500 ALA A 173 -134.25 42.26
REMARK 500 TYR A 179 75.72 -118.61
REMARK 500 ASP A 185 -160.77 62.06
REMARK 500 SER A 211 -154.07 -147.13
REMARK 500 LEU B 86 60.41 -66.84
REMARK 500 ALA B 173 -130.59 44.48
REMARK 500 TYR B 179 72.87 -118.69
REMARK 500 ASP B 185 -166.67 64.35
REMARK 500 SER B 211 -155.06 -149.59
REMARK 500
REMARK 500 REMARK: NULL
REMARK 620
REMARK 620 METAL COORDINATION
REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER;
REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE):
REMARK 620
REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL
REMARK 620 ZN A 301 ZN
REMARK 620 N RES CSSEQI ATOM
REMARK 620 1 CYS A 99 SG
REMARK 620 2 HIS A 226 NE2 113.3
REMARK 620 3 HIS A 230 NE2 116.4 105.5
REMARK 620 4 HIS A 236 NE2 115.5 106.0 98.6
REMARK 620 N 1 2 3
REMARK 620
REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL
REMARK 620 CA A 305 CA
REMARK 620 N RES CSSEQI ATOM
REMARK 620 1 ASP A 131 OD2
REMARK 620 2 ASP A 206 O 171.0
REMARK 620 3 ASP A 206 OD1 99.9 72.8
REMARK 620 4 GLU A 208 O 83.5 93.8 109.2
REMARK 620 5 HOH A 450 O 88.3 96.5 87.2 162.7
REMARK 620 6 HOH B 510 O 95.2 93.0 161.4 83.3 82.3
REMARK 620 N 1 2 3 4 5
REMARK 620
REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL
REMARK 620 CA A 304 CA
REMARK 620 N RES CSSEQI ATOM
REMARK 620 1 ASP A 165 O
REMARK 620 2 GLY A 197 O 171.6
REMARK 620 3 GLN A 199 O 94.0 88.6
REMARK 620 4 ASP A 201 OD1 93.0 94.5 99.2
REMARK 620 5 HOH A 417 O 84.1 88.4 80.6 177.1
REMARK 620 6 HOH A 460 O 100.0 75.9 161.4 92.3 88.7
REMARK 620 N 1 2 3 4 5
REMARK 620
REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL
REMARK 620 ZN A 302 ZN
REMARK 620 N RES CSSEQI ATOM
REMARK 620 1 HIS A 175 NE2
REMARK 620 2 ASP A 177 OD2 112.3
REMARK 620 3 HIS A 190 NE2 113.7 112.5
REMARK 620 4 HIS A 203 ND1 109.2 92.1 115.2
REMARK 620 N 1 2 3
REMARK 620
REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL
REMARK 620 CA A 303 CA
REMARK 620 N RES CSSEQI ATOM
REMARK 620 1 ASP A 182 OD1
REMARK 620 2 GLY A 183 O 89.6
REMARK 620 3 ASP A 185 O 87.5 88.4
REMARK 620 4 LEU A 187 O 86.1 175.4 92.8
REMARK 620 5 ASP A 205 OD2 90.2 87.0 174.9 91.6
REMARK 620 6 GLU A 208 OE2 171.6 93.9 84.9 90.6 97.6
REMARK 620 N 1 2 3 4 5
REMARK 620
REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL
REMARK 620 ZN B 301 ZN
REMARK 620 N RES CSSEQI ATOM
REMARK 620 1 CYS B 99 SG
REMARK 620 2 HIS B 226 NE2 111.7
REMARK 620 3 HIS B 230 NE2 114.6 106.2
REMARK 620 4 HIS B 236 NE2 115.1 105.5 102.7
REMARK 620 N 1 2 3
REMARK 620
REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL
REMARK 620 CA B 304 CA
REMARK 620 N RES CSSEQI ATOM
REMARK 620 1 ASP B 165 O
REMARK 620 2 GLY B 197 O 165.5
REMARK 620 3 GLN B 199 O 97.8 90.2
REMARK 620 4 ASP B 201 OD1 93.1 97.5 99.5
REMARK 620 5 HOH B 420 O 78.5 91.3 78.5 171.0
REMARK 620 6 HOH B 435 O 93.7 74.9 157.9 98.7 85.3
REMARK 620 N 1 2 3 4 5
REMARK 620
REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL
REMARK 620 ZN B 302 ZN
REMARK 620 N RES CSSEQI ATOM
REMARK 620 1 HIS B 175 NE2
REMARK 620 2 ASP B 177 OD2 114.3
REMARK 620 3 HIS B 190 NE2 116.5 112.7
REMARK 620 4 HIS B 203 ND1 105.0 91.8 113.7
REMARK 620 N 1 2 3
REMARK 620
REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL
REMARK 620 CA B 303 CA
REMARK 620 N RES CSSEQI ATOM
REMARK 620 1 ASP B 182 OD1
REMARK 620 2 GLY B 183 O 85.7
REMARK 620 3 ASP B 185 O 86.0 87.8
REMARK 620 4 LEU B 187 O 92.4 177.1 94.2
REMARK 620 5 ASP B 205 OD2 90.9 83.3 170.8 94.6
REMARK 620 6 GLU B 208 OE2 166.0 94.6 80.0 87.8 103.0
REMARK 620 N 1 2 3 4 5
REMARK 800
REMARK 800 SITE
REMARK 800 SITE_IDENTIFIER: AC1
REMARK 800 EVIDENCE_CODE: SOFTWARE
REMARK 800 SITE_DESCRIPTION: binding site for residue ZN A 301
REMARK 800
REMARK 800 SITE_IDENTIFIER: AC2
REMARK 800 EVIDENCE_CODE: SOFTWARE
REMARK 800 SITE_DESCRIPTION: binding site for residue ZN A 302
REMARK 800
REMARK 800 SITE_IDENTIFIER: AC3
REMARK 800 EVIDENCE_CODE: SOFTWARE
REMARK 800 SITE_DESCRIPTION: binding site for residue CA A 303
REMARK 800
REMARK 800 SITE_IDENTIFIER: AC4
REMARK 800 EVIDENCE_CODE: SOFTWARE
REMARK 800 SITE_DESCRIPTION: binding site for residue CA A 304
REMARK 800
REMARK 800 SITE_IDENTIFIER: AC5
REMARK 800 EVIDENCE_CODE: SOFTWARE
REMARK 800 SITE_DESCRIPTION: binding site for residue CA A 305
REMARK 800
REMARK 800 SITE_IDENTIFIER: AC6
REMARK 800 EVIDENCE_CODE: SOFTWARE
REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 306
REMARK 800
REMARK 800 SITE_IDENTIFIER: AC7
REMARK 800 EVIDENCE_CODE: SOFTWARE
REMARK 800 SITE_DESCRIPTION: binding site for residue ZN B 301
REMARK 800
REMARK 800 SITE_IDENTIFIER: AC8
REMARK 800 EVIDENCE_CODE: SOFTWARE
REMARK 800 SITE_DESCRIPTION: binding site for residue ZN B 302
REMARK 800
REMARK 800 SITE_IDENTIFIER: AC9
REMARK 800 EVIDENCE_CODE: SOFTWARE
REMARK 800 SITE_DESCRIPTION: binding site for residue CA B 303
REMARK 800
REMARK 800 SITE_IDENTIFIER: AD1
REMARK 800 EVIDENCE_CODE: SOFTWARE
REMARK 800 SITE_DESCRIPTION: binding site for residue CA B 304
REMARK 800
REMARK 800 SITE_IDENTIFIER: AD2
REMARK 800 EVIDENCE_CODE: SOFTWARE
REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 B 305
REMARK 800
REMARK 800 SITE_IDENTIFIER: AD3
REMARK 800 EVIDENCE_CODE: SOFTWARE
REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 B 306
REMARK 800
REMARK 800 SITE_IDENTIFIER: AD4
REMARK 800 EVIDENCE_CODE: SOFTWARE
REMARK 800 SITE_DESCRIPTION: binding site for residue 5XQ B 307
REMARK 900
REMARK 900 RELATED ENTRIES
REMARK 900 RELATED ID: 5UE3 RELATED DB: PDB
DBREF 5UE4 A 35 215 UNP P14780 MMP9_HUMAN 35 215
DBREF 5UE4 A 216 270 UNP P14780 MMP9_HUMAN 391 445
DBREF 5UE4 B 35 215 UNP P14780 MMP9_HUMAN 35 215
DBREF 5UE4 B 216 270 UNP P14780 MMP9_HUMAN 391 445
SEQRES 1 A 236 LEU ARG THR ASN LEU THR ASP ARG GLN LEU ALA GLU GLU
SEQRES 2 A 236 TYR LEU TYR ARG TYR GLY TYR THR ARG VAL ALA GLU MET
SEQRES 3 A 236 ARG GLY GLU SER LYS SER LEU GLY PRO ALA LEU LEU LEU
SEQRES 4 A 236 LEU GLN LYS GLN LEU SER LEU PRO GLU THR GLY GLU LEU
SEQRES 5 A 236 ASP SER ALA THR LEU LYS ALA MET ARG THR PRO ARG CYS
SEQRES 6 A 236 GLY VAL PRO ASP LEU GLY ARG PHE GLN THR PHE GLU GLY
SEQRES 7 A 236 ASP LEU LYS TRP HIS HIS HIS ASN ILE THR TYR TRP ILE
SEQRES 8 A 236 GLN ASN TYR SER GLU ASP LEU PRO ARG ALA VAL ILE ASP
SEQRES 9 A 236 ASP ALA PHE ALA ARG ALA PHE ALA LEU TRP SER ALA VAL
SEQRES 10 A 236 THR PRO LEU THR PHE THR ARG VAL TYR SER ARG ASP ALA
SEQRES 11 A 236 ASP ILE VAL ILE GLN PHE GLY VAL ALA GLU HIS GLY ASP
SEQRES 12 A 236 GLY TYR PRO PHE ASP GLY LYS ASP GLY LEU LEU ALA HIS
SEQRES 13 A 236 ALA PHE PRO PRO GLY PRO GLY ILE GLN GLY ASP ALA HIS
SEQRES 14 A 236 PHE ASP ASP ASP GLU LEU TRP SER LEU GLY LYS GLY GLN
SEQRES 15 A 236 GLY TYR SER LEU PHE LEU VAL ALA ALA HIS GLU PHE GLY
SEQRES 16 A 236 HIS ALA LEU GLY LEU ASP HIS SER SER VAL PRO GLU ALA
SEQRES 17 A 236 LEU MET TYR PRO MET TYR ARG PHE THR GLU GLY PRO PRO
SEQRES 18 A 236 LEU HIS LYS ASP ASP VAL ASN GLY ILE ARG HIS LEU TYR
SEQRES 19 A 236 GLY PRO
SEQRES 1 B 236 LEU ARG THR ASN LEU THR ASP ARG GLN LEU ALA GLU GLU
SEQRES 2 B 236 TYR LEU TYR ARG TYR GLY TYR THR ARG VAL ALA GLU MET
SEQRES 3 B 236 ARG GLY GLU SER LYS SER LEU GLY PRO ALA LEU LEU LEU
SEQRES 4 B 236 LEU GLN LYS GLN LEU SER LEU PRO GLU THR GLY GLU LEU
SEQRES 5 B 236 ASP SER ALA THR LEU LYS ALA MET ARG THR PRO ARG CYS
SEQRES 6 B 236 GLY VAL PRO ASP LEU GLY ARG PHE GLN THR PHE GLU GLY
SEQRES 7 B 236 ASP LEU LYS TRP HIS HIS HIS ASN ILE THR TYR TRP ILE
SEQRES 8 B 236 GLN ASN TYR SER GLU ASP LEU PRO ARG ALA VAL ILE ASP
SEQRES 9 B 236 ASP ALA PHE ALA ARG ALA PHE ALA LEU TRP SER ALA VAL
SEQRES 10 B 236 THR PRO LEU THR PHE THR ARG VAL TYR SER ARG ASP ALA
SEQRES 11 B 236 ASP ILE VAL ILE GLN PHE GLY VAL ALA GLU HIS GLY ASP
SEQRES 12 B 236 GLY TYR PRO PHE ASP GLY LYS ASP GLY LEU LEU ALA HIS
SEQRES 13 B 236 ALA PHE PRO PRO GLY PRO GLY ILE GLN GLY ASP ALA HIS
SEQRES 14 B 236 PHE ASP ASP ASP GLU LEU TRP SER LEU GLY LYS GLY GLN
SEQRES 15 B 236 GLY TYR SER LEU PHE LEU VAL ALA ALA HIS GLU PHE GLY
SEQRES 16 B 236 HIS ALA LEU GLY LEU ASP HIS SER SER VAL PRO GLU ALA
SEQRES 17 B 236 LEU MET TYR PRO MET TYR ARG PHE THR GLU GLY PRO PRO
SEQRES 18 B 236 LEU HIS LYS ASP ASP VAL ASN GLY ILE ARG HIS LEU TYR
SEQRES 19 B 236 GLY PRO
HET ZN A 301 1
HET ZN A 302 1
HET CA A 303 1
HET CA A 304 1
HET CA A 305 1
HET SO4 A 306 5
HET ZN B 301 1
HET ZN B 302 1
HET CA B 303 1
HET CA B 304 1
HET SO4 B 305 5
HET SO4 B 306 5
HET 5XQ B 307 24
HETNAM ZN ZINC ION
HETNAM CA CALCIUM ION
HETNAM SO4 SULFATE ION
HETNAM 5XQ ~{N}-[5-[2-[(2-METHOXYPHENYL)AMINO]-1,3-THIAZOL-4-YL]-
HETNAM 2 5XQ 4-METHYL-1,3-THIAZOL-2-YL]ETHANAMIDE
FORMUL 3 ZN 4(ZN 2+)
FORMUL 5 CA 5(CA 2+)
FORMUL 8 SO4 3(O4 S 2-)
FORMUL 15 5XQ C16 H16 N4 O2 S2
FORMUL 16 HOH *316(H2 O)
HELIX 1 AA1 THR A 40 TYR A 52 1 13
HELIX 2 AA2 GLY A 53 ARG A 61 1 9
HELIX 3 AA3 LEU A 67 SER A 79 1 13
HELIX 4 AA4 ASP A 87 THR A 96 1 10
HELIX 5 AA5 PRO A 133 THR A 152 1 20
HELIX 6 AA6 LEU A 220 LEU A 232 1 13
HELIX 7 AA7 HIS A 257 HIS A 266 1 10
HELIX 8 AA8 ARG B 42 TYR B 52 1 11
HELIX 9 AA9 GLY B 53 GLU B 59 1 7
HELIX 10 AB1 LEU B 67 LEU B 78 1 12
HELIX 11 AB2 ASP B 87 THR B 96 1 10
HELIX 12 AB3 PRO B 133 ALA B 150 1 18
HELIX 13 AB4 LEU B 220 LEU B 232 1 13
HELIX 14 AB5 HIS B 257 GLY B 269 1 13
SHEET 1 AA1 5 THR A 155 VAL A 159 0
SHEET 2 AA1 5 ASN A 120 ILE A 125 1 N TYR A 123 O VAL A 159
SHEET 3 AA1 5 ILE A 166 GLY A 171 1 O ILE A 168 N TRP A 124
SHEET 4 AA1 5 ALA A 202 ASP A 205 1 O PHE A 204 N GLN A 169
SHEET 5 AA1 5 ALA A 189 ALA A 191 -1 N HIS A 190 O HIS A 203
SHEET 1 AA2 2 TRP A 210 SER A 211 0
SHEET 2 AA2 2 TYR A 218 SER A 219 1 O TYR A 218 N SER A 211
SHEET 1 AA3 5 THR B 155 ARG B 158 0
SHEET 2 AA3 5 ASN B 120 ILE B 125 1 N ILE B 121 O THR B 155
SHEET 3 AA3 5 ILE B 166 GLY B 171 1 O ILE B 168 N TRP B 124
SHEET 4 AA3 5 ALA B 202 ASP B 205 1 O PHE B 204 N GLN B 169
SHEET 5 AA3 5 ALA B 189 ALA B 191 -1 N HIS B 190 O HIS B 203
SHEET 1 AA4 2 TRP B 210 SER B 211 0
SHEET 2 AA4 2 TYR B 218 SER B 219 1 O TYR B 218 N SER B 211
LINK SG CYS A 99 ZN ZN A 301 1555 1555 2.29
LINK OD2 ASP A 131 CA CA A 305 1555 1555 2.40
LINK O ASP A 165 CA CA A 304 1555 1555 2.45
LINK NE2 HIS A 175 ZN ZN A 302 1555 1555 2.15
LINK OD2 ASP A 177 ZN ZN A 302 1555 1555 2.04
LINK OD1 ASP A 182 CA CA A 303 1555 1555 2.39
LINK O GLY A 183 CA CA A 303 1555 1555 2.32
LINK O ASP A 185 CA CA A 303 1555 1555 2.37
LINK O LEU A 187 CA CA A 303 1555 1555 2.36
LINK NE2 HIS A 190 ZN ZN A 302 1555 1555 2.12
LINK O GLY A 197 CA CA A 304 1555 1555 2.53
LINK O GLN A 199 CA CA A 304 1555 1555 2.43
LINK OD1 ASP A 201 CA CA A 304 1555 1555 2.61
LINK ND1 HIS A 203 ZN ZN A 302 1555 1555 2.11
LINK OD2 ASP A 205 CA CA A 303 1555 1555 2.40
LINK O ASP A 206 CA CA A 305 1555 1555 2.58
LINK OD1 ASP A 206 CA CA A 305 1555 1555 2.58
LINK OE2 GLU A 208 CA CA A 303 1555 1555 2.35
LINK O GLU A 208 CA CA A 305 1555 1555 2.35
LINK NE2 HIS A 226 ZN ZN A 301 1555 1555 2.04
LINK NE2 HIS A 230 ZN ZN A 301 1555 1555 2.02
LINK NE2 HIS A 236 ZN ZN A 301 1555 1555 2.04
LINK CA CA A 304 O HOH A 417 1555 1555 2.61
LINK CA CA A 304 O HOH A 460 1555 1555 2.46
LINK CA CA A 305 O HOH A 450 1555 1555 2.56
LINK CA CA A 305 O HOH B 510 1555 2646 2.55
LINK SG CYS B 99 ZN ZN B 301 1555 1555 2.26
LINK O ASP B 165 CA CA B 304 1555 1555 2.47
LINK NE2 HIS B 175 ZN ZN B 302 1555 1555 2.08
LINK OD2 ASP B 177 ZN ZN B 302 1555 1555 2.04
LINK OD1 ASP B 182 CA CA B 303 1555 1555 2.42
LINK O GLY B 183 CA CA B 303 1555 1555 2.38
LINK O ASP B 185 CA CA B 303 1555 1555 2.45
LINK O LEU B 187 CA CA B 303 1555 1555 2.28
LINK NE2 HIS B 190 ZN ZN B 302 1555 1555 2.07
LINK O GLY B 197 CA CA B 304 1555 1555 2.56
LINK O GLN B 199 CA CA B 304 1555 1555 2.44
LINK OD1 ASP B 201 CA CA B 304 1555 1555 2.58
LINK ND1 HIS B 203 ZN ZN B 302 1555 1555 2.17
LINK OD2 ASP B 205 CA CA B 303 1555 1555 2.36
LINK OE2 GLU B 208 CA CA B 303 1555 1555 2.34
LINK NE2 HIS B 226 ZN ZN B 301 1555 1555 2.14
LINK NE2 HIS B 230 ZN ZN B 301 1555 1555 2.02
LINK NE2 HIS B 236 ZN ZN B 301 1555 1555 2.00
LINK CA CA B 304 O HOH B 420 1555 1555 2.64
LINK CA CA B 304 O HOH B 435 1555 1555 2.49
SITE 1 AC1 4 CYS A 99 HIS A 226 HIS A 230 HIS A 236
SITE 1 AC2 4 HIS A 175 ASP A 177 HIS A 190 HIS A 203
SITE 1 AC3 6 ASP A 182 GLY A 183 ASP A 185 LEU A 187
SITE 2 AC3 6 ASP A 205 GLU A 208
SITE 1 AC4 6 ASP A 165 GLY A 197 GLN A 199 ASP A 201
SITE 2 AC4 6 HOH A 417 HOH A 460
SITE 1 AC5 5 ASP A 131 ASP A 206 GLU A 208 HOH A 450
SITE 2 AC5 5 HOH B 510
SITE 1 AC6 4 TRP A 116 HIS A 117 HIS A 118 HOH A 438
SITE 1 AC7 4 CYS B 99 HIS B 226 HIS B 230 HIS B 236
SITE 1 AC8 4 HIS B 175 ASP B 177 HIS B 190 HIS B 203
SITE 1 AC9 6 ASP B 182 GLY B 183 ASP B 185 LEU B 187
SITE 2 AC9 6 ASP B 205 GLU B 208
SITE 1 AD1 6 ASP B 165 GLY B 197 GLN B 199 ASP B 201
SITE 2 AD1 6 HOH B 420 HOH B 435
SITE 1 AD2 6 TRP B 116 HIS B 117 HIS B 118 HOH B 414
SITE 2 AD2 6 HOH B 424 HOH B 493
SITE 1 AD3 7 GLY A 105 ARG A 106 HOH A 512 SER B 211
SITE 2 AD3 7 GLY B 215 GLN B 216 GLY B 217
SITE 1 AD4 13 VAL B 101 ARG B 106 PHE B 110 LEU B 114
SITE 2 AD4 13 TYR B 179 HIS B 190 ALA B 191 PHE B 192
SITE 3 AD4 13 PRO B 193 HIS B 230 GLY B 233 LEU B 234
SITE 4 AD4 13 HOH B 479
CRYST1 89.820 72.945 77.537 90.00 106.91 90.00 C 1 2 1 8
ORIGX1 1.000000 0.000000 0.000000 0.00000
ORIGX2 0.000000 1.000000 0.000000 0.00000
ORIGX3 0.000000 0.000000 1.000000 0.00000
SCALE1 0.011133 0.000000 0.003384 0.00000
SCALE2 0.000000 0.013709 0.000000 0.00000
SCALE3 0.000000 0.000000 0.013480 0.00000