HEADER RNA 01-JAN-17 5UED TITLE RNA PRIMER-TEMPLATE COMPLEX WITH GUANOSINE DINUCLEOTIDE LIGAND G(5') TITLE 2 PP(5')G COMPND MOL_ID: 1; COMPND 2 MOLECULE: RNA (5'-R(*(LCC)P*(LCC)P*(LCC) COMPND 3 P*GP*AP*CP*UP*UP*AP*AP*GP*UP*CP*G)-3'); COMPND 4 CHAIN: A, B; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 SYNTHETIC: YES; SOURCE 3 ORGANISM_SCIENTIFIC: SYNTHETIC CONSTRUCT; SOURCE 4 ORGANISM_TAXID: 32630 KEYWDS RNA, DINUCLEOTIDE EXPDTA X-RAY DIFFRACTION AUTHOR W.ZHANG,C.P.TAM,J.W.SZOSTAK REVDAT 4 04-OCT-23 5UED 1 REMARK REVDAT 3 02-AUG-17 5UED 1 JRNL REVDAT 2 19-JUL-17 5UED 1 JRNL REVDAT 1 05-JUL-17 5UED 0 JRNL AUTH W.ZHANG,C.P.TAM,T.WALTON,A.C.FAHRENBACH,G.BIRRANE, JRNL AUTH 2 J.W.SZOSTAK JRNL TITL INSIGHT INTO THE MECHANISM OF NONENZYMATIC RNA PRIMER JRNL TITL 2 EXTENSION FROM THE STRUCTURE OF AN RNA-GPPPG COMPLEX. JRNL REF PROC. NATL. ACAD. SCI. V. 114 7659 2017 JRNL REF 2 U.S.A. JRNL REFN ESSN 1091-6490 JRNL PMID 28673998 JRNL DOI 10.1073/PNAS.1704006114 REMARK 2 REMARK 2 RESOLUTION. 1.50 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0135 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.50 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 50.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 94.5 REMARK 3 NUMBER OF REFLECTIONS : 14252 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.211 REMARK 3 R VALUE (WORKING SET) : 0.210 REMARK 3 FREE R VALUE : 0.232 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.300 REMARK 3 FREE R VALUE TEST SET COUNT : 795 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.50 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.54 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1063 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 98.59 REMARK 3 BIN R VALUE (WORKING SET) : 0.1920 REMARK 3 BIN FREE R VALUE SET COUNT : 59 REMARK 3 BIN FREE R VALUE : 0.2610 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 0 REMARK 3 NUCLEIC ACID ATOMS : 596 REMARK 3 HETEROGEN ATOMS : 94 REMARK 3 SOLVENT ATOMS : 97 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 18.04 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.00000 REMARK 3 B22 (A**2) : 0.00000 REMARK 3 B33 (A**2) : 0.00000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.087 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.085 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.047 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 1.223 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.957 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.931 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 766 ; 0.025 ; 0.016 REMARK 3 BOND LENGTHS OTHERS (A): 336 ; 0.062 ; 0.023 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 1188 ; 3.216 ; 1.843 REMARK 3 BOND ANGLES OTHERS (DEGREES): 810 ; 3.552 ; 3.224 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): NULL ; NULL ; NULL REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 136 ; 0.252 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 388 ; 0.027 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 148 ; 0.003 ; 0.021 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 766 ; 2.418 ; 1.845 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 767 ; 2.416 ; 1.844 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 1189 ; 3.391 ; 2.785 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): 1182 ; 4.632 ;18.895 REMARK 3 LONG RANGE B OTHER ATOMS (A**2): 1146 ; 4.629 ;18.753 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 5UED COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 09-JAN-17. REMARK 100 THE DEPOSITION ID IS D_1000225738. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 20-JUL-16 REMARK 200 TEMPERATURE (KELVIN) : 99 REMARK 200 PH : 7.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ALS REMARK 200 BEAMLINE : 8.2.2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.997 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 15113 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.500 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 95.1 REMARK 200 DATA REDUNDANCY : 9.800 REMARK 200 R MERGE (I) : 0.07900 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 28.4000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 5DHC REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 53.42 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.40 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.05 M MAGNESIUM CHLORIDE, 0.2 M REMARK 280 AMMONIUM CITRATE TRIBASIC PH 7.0, 20% W/V POLYETHYLENE GLYCOL 3, REMARK 280 350, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 3 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z REMARK 290 3555 -X+Y,-X,Z REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z REMARK 290 6555 -X,-X+Y,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1460 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 6020 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -3.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 207 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 220 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 238 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 243 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 250 LIES ON A SPECIAL POSITION. REMARK 375 HOH B 203 LIES ON A SPECIAL POSITION. REMARK 375 HOH B 217 LIES ON A SPECIAL POSITION. REMARK 375 HOH B 240 LIES ON A SPECIAL POSITION. REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 LCC A 2 O3' LCC A 3 P 0.076 REMARK 500 U A 7 P U A 7 OP2 -0.106 REMARK 500 LCC B 2 O3' LCC B 3 P 0.075 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 G A 11 O5' - P - OP2 ANGL. DEV. = -10.6 DEGREES REMARK 500 G B 11 O5' - P - OP2 ANGL. DEV. = -11.4 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue 86S A 101 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue 86S B 101 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 5UEE RELATED DB: PDB REMARK 900 RELATED ID: 5UEF RELATED DB: PDB REMARK 900 RELATED ID: 5UEG RELATED DB: PDB DBREF 5UED A 1 14 PDB 5UED 5UED 1 14 DBREF 5UED B 1 14 PDB 5UED 5UED 1 14 SEQRES 1 A 14 LCC LCC LCC G A C U U A A G U C SEQRES 2 A 14 G SEQRES 1 B 14 LCC LCC LCC G A C U U A A G U C SEQRES 2 B 14 G HET LCC A 1 19 HET LCC A 2 22 HET LCC A 3 22 HET LCC B 1 19 HET LCC B 2 22 HET LCC B 3 22 HET 86S A 101 47 HET 86S B 101 47 HETNAM LCC [(1R,3R,4R,7S)-7-HYDROXY-3-(5-METHYLCYTOSIN-1-YL)-2,5- HETNAM 2 LCC DIOXABICYCLO[2.2.1]HEPT-1-YL]METHYL DIHYDROGEN HETNAM 3 LCC PHOSPHATE HETNAM 86S [[(2~{R},3~{S},4~{R},5~{R})-5-(2-AZANYL-6- HETNAM 2 86S OXIDANYLIDENE-1~{H}-PURIN-9-YL)-3,4-BIS(OXIDANYL) HETNAM 3 86S OXOLAN-2-YL]METHOXY-OXIDANYL-PHOSPHORYL] [(2~{R}, HETNAM 4 86S 3~{S},4~{R},5~{R})-5-(2-AZANYL-6-OXIDANYLIDENE-1~{H}- HETNAM 5 86S PURIN-9-YL)-3,4-BIS(OXIDANYL)OXOLAN-2-YL]METHYL HETNAM 6 86S HYDROGEN PHOSPHATE FORMUL 1 LCC 6(C11 H16 N3 O8 P) FORMUL 3 86S 2(C20 H26 N10 O15 P2) FORMUL 5 HOH *97(H2 O) LINK O3' LCC A 1 P LCC A 2 1555 1555 1.62 LINK O3' LCC A 2 P LCC A 3 1555 1555 1.68 LINK O3' LCC A 3 P G A 4 1555 1555 1.60 LINK O3' LCC B 1 P LCC B 2 1555 1555 1.67 LINK O3' LCC B 2 P LCC B 3 1555 1555 1.68 LINK O3' LCC B 3 P G B 4 1555 1555 1.63 SITE 1 AC1 14 LCC A 1 LCC A 2 LCC A 3 HOH A 202 SITE 2 AC1 14 HOH A 203 HOH A 205 HOH A 215 HOH A 224 SITE 3 AC1 14 HOH A 238 HOH A 244 G B 14 HOH B 210 SITE 4 AC1 14 HOH B 212 HOH B 214 SITE 1 AC2 4 G A 14 LCC B 1 LCC B 2 LCC B 3 CRYST1 43.911 43.911 85.406 90.00 90.00 120.00 P 3 2 1 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.022773 0.013148 0.000000 0.00000 SCALE2 0.000000 0.026296 0.000000 0.00000 SCALE3 0.000000 0.000000 0.011709 0.00000 HETATM 1 O5' LCC A 1 -4.042 31.716 2.890 1.00 17.77 O HETATM 2 C5' LCC A 1 -2.745 31.346 2.818 1.00 18.62 C HETATM 3 C4' LCC A 1 -1.827 32.558 2.794 1.00 14.79 C HETATM 4 O4' LCC A 1 -2.187 33.374 1.688 1.00 13.53 O HETATM 5 C1' LCC A 1 -1.505 34.639 1.905 1.00 12.17 C HETATM 6 N1 LCC A 1 -2.385 35.782 1.868 1.00 12.28 N HETATM 7 C6 LCC A 1 -3.739 35.590 1.892 1.00 13.09 C HETATM 8 C5 LCC A 1 -4.579 36.669 1.833 1.00 13.09 C HETATM 9 C5M LCC A 1 -5.933 36.439 1.850 1.00 14.17 C HETATM 10 C4 LCC A 1 -3.986 37.930 1.746 1.00 13.36 C HETATM 11 N4 LCC A 1 -4.828 38.971 1.653 1.00 14.57 N HETATM 12 N3 LCC A 1 -2.657 38.026 1.709 1.00 12.27 N HETATM 13 C2 LCC A 1 -1.831 36.990 1.786 1.00 12.59 C HETATM 14 O2 LCC A 1 -0.621 37.154 1.781 1.00 12.84 O HETATM 15 C3' LCC A 1 -1.874 33.558 3.909 1.00 14.49 C HETATM 16 C2' LCC A 1 -0.832 34.377 3.241 1.00 13.93 C HETATM 17 O2' LCC A 1 0.236 33.458 3.008 1.00 15.27 O HETATM 18 O3' LCC A 1 -1.439 33.013 5.150 1.00 16.97 O HETATM 19 C6' LCC A 1 -0.360 32.178 2.728 1.00 14.32 C HETATM 20 O5' LCC A 2 -1.333 35.066 6.592 1.00 14.14 O HETATM 21 C5' LCC A 2 0.012 35.236 6.719 1.00 13.51 C HETATM 22 C4' LCC A 2 0.298 36.738 6.496 1.00 12.48 C HETATM 23 O4' LCC A 2 -0.256 37.146 5.236 1.00 13.18 O HETATM 24 C1' LCC A 2 -0.362 38.498 5.285 1.00 11.88 C HETATM 25 N1 LCC A 2 -1.751 38.932 5.184 1.00 12.38 N HETATM 26 C6 LCC A 2 -2.782 38.068 5.270 1.00 11.46 C HETATM 27 C5 LCC A 2 -4.075 38.502 5.167 1.00 12.24 C HETATM 28 C5M LCC A 2 -5.123 37.581 5.258 1.00 11.07 C HETATM 29 C4 LCC A 2 -4.308 39.831 4.912 1.00 11.95 C HETATM 30 N4 LCC A 2 -5.523 40.264 4.805 1.00 12.94 N HETATM 31 N3 LCC A 2 -3.273 40.618 4.806 1.00 12.61 N HETATM 32 C2 LCC A 2 -2.026 40.217 4.990 1.00 12.61 C HETATM 33 O2 LCC A 2 -1.147 41.025 4.914 1.00 13.20 O HETATM 34 C3' LCC A 2 -0.347 37.676 7.464 1.00 13.28 C HETATM 35 C2' LCC A 2 0.212 38.815 6.649 1.00 12.16 C HETATM 36 O2' LCC A 2 1.612 38.559 6.600 1.00 13.17 O HETATM 37 O3' LCC A 2 0.240 37.578 8.711 1.00 12.81 O HETATM 38 C6' LCC A 2 1.790 37.163 6.570 1.00 12.57 C HETATM 39 P LCC A 2 -1.956 33.589 6.567 1.00 16.93 P HETATM 40 O1P LCC A 2 -1.358 32.796 7.548 1.00 20.14 O HETATM 41 O2P LCC A 2 -3.288 33.821 6.620 1.00 18.69 O HETATM 42 O5' LCC A 3 -0.141 39.890 9.786 1.00 12.84 O HETATM 43 C5' LCC A 3 1.286 40.390 9.733 1.00 13.19 C HETATM 44 C4' LCC A 3 1.118 41.879 9.376 1.00 13.87 C HETATM 45 O4' LCC A 3 0.516 42.080 8.098 1.00 13.11 O HETATM 46 C1' LCC A 3 -0.027 43.435 8.170 1.00 12.41 C HETATM 47 N1 LCC A 3 -1.519 43.363 8.097 1.00 11.48 N HETATM 48 C6 LCC A 3 -2.229 42.120 8.180 1.00 11.10 C HETATM 49 C5 LCC A 3 -3.552 42.047 8.053 1.00 11.82 C HETATM 50 C5M LCC A 3 -4.307 40.826 8.201 1.00 13.03 C HETATM 51 C4 LCC A 3 -4.168 43.274 7.775 1.00 11.36 C HETATM 52 N4 LCC A 3 -5.512 43.324 7.582 1.00 13.18 N HETATM 53 N3 LCC A 3 -3.554 44.462 7.687 1.00 11.28 N HETATM 54 C2 LCC A 3 -2.226 44.499 7.855 1.00 12.60 C HETATM 55 O2 LCC A 3 -1.584 45.559 7.783 1.00 13.37 O HETATM 56 C3' LCC A 3 0.205 42.669 10.301 1.00 14.12 C HETATM 57 C2' LCC A 3 0.433 43.840 9.553 1.00 13.01 C HETATM 58 O2' LCC A 3 1.887 44.053 9.465 1.00 13.82 O HETATM 59 O3' LCC A 3 0.803 42.709 11.635 1.00 14.17 O HETATM 60 C6' LCC A 3 2.402 42.637 9.422 1.00 12.75 C HETATM 61 P LCC A 3 -0.446 38.354 10.037 1.00 13.38 P HETATM 62 O1P LCC A 3 0.360 37.835 11.181 1.00 16.19 O HETATM 63 O2P LCC A 3 -1.926 38.237 10.003 1.00 14.04 O