HEADER RNA 01-JAN-17 5UEE TITLE RNA PRIMER-TEMPLATE COMPLEX WITH GUANOSINE DINUCLEOTIDE LIGAND G(5') TITLE 2 PPP(5')G COMPND MOL_ID: 1; COMPND 2 MOLECULE: RNA (5'-R(*(LCC)P*(LCC)P*(LCC) COMPND 3 P*GP*AP*CP*UP*UP*AP*AP*GP*UP*CP*G)-3'); COMPND 4 CHAIN: A, B; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 SYNTHETIC: YES; SOURCE 3 ORGANISM_SCIENTIFIC: SYNTHETIC CONSTRUCT; SOURCE 4 ORGANISM_TAXID: 32630 KEYWDS RNA, DINUCLEOTIDE EXPDTA X-RAY DIFFRACTION AUTHOR W.ZHANG,C.P.TAM,J.W.SZOSTAK REVDAT 4 04-OCT-23 5UEE 1 LINK REVDAT 3 02-AUG-17 5UEE 1 JRNL REVDAT 2 19-JUL-17 5UEE 1 JRNL REVDAT 1 05-JUL-17 5UEE 0 JRNL AUTH W.ZHANG,C.P.TAM,T.WALTON,A.C.FAHRENBACH,G.BIRRANE, JRNL AUTH 2 J.W.SZOSTAK JRNL TITL INSIGHT INTO THE MECHANISM OF NONENZYMATIC RNA PRIMER JRNL TITL 2 EXTENSION FROM THE STRUCTURE OF AN RNA-GPPPG COMPLEX. JRNL REF PROC. NATL. ACAD. SCI. V. 114 7659 2017 JRNL REF 2 U.S.A. JRNL REFN ESSN 1091-6490 JRNL PMID 28673998 JRNL DOI 10.1073/PNAS.1704006114 REMARK 2 REMARK 2 RESOLUTION. 1.90 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0135 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.90 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 50.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.3 REMARK 3 NUMBER OF REFLECTIONS : 8299 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.234 REMARK 3 R VALUE (WORKING SET) : 0.232 REMARK 3 FREE R VALUE : 0.275 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 442 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.90 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.95 REMARK 3 REFLECTION IN BIN (WORKING SET) : 574 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 92.31 REMARK 3 BIN R VALUE (WORKING SET) : 0.3420 REMARK 3 BIN FREE R VALUE SET COUNT : 14 REMARK 3 BIN FREE R VALUE : 0.4810 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 0 REMARK 3 NUCLEIC ACID ATOMS : 596 REMARK 3 HETEROGEN ATOMS : 108 REMARK 3 SOLVENT ATOMS : 23 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 32.42 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.01000 REMARK 3 B22 (A**2) : 0.01000 REMARK 3 B33 (A**2) : -0.03000 REMARK 3 B12 (A**2) : 0.01000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.165 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.158 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.122 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 4.456 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.958 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.939 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 774 ; 0.021 ; 0.016 REMARK 3 BOND LENGTHS OTHERS (A): 336 ; 0.055 ; 0.023 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 1202 ; 2.659 ; 1.854 REMARK 3 BOND ANGLES OTHERS (DEGREES): 810 ; 3.563 ; 3.224 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): NULL ; NULL ; NULL REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 138 ; 0.136 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 388 ; 0.017 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 148 ; 0.002 ; 0.021 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 774 ; 3.180 ; 3.423 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 775 ; 3.178 ; 3.423 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 1203 ; 4.173 ; 5.150 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): 1121 ; 5.839 ;33.556 REMARK 3 LONG RANGE B OTHER ATOMS (A**2): 1120 ; 5.839 ;33.543 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 5UEE COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 06-JAN-17. REMARK 100 THE DEPOSITION ID IS D_1000225739. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 20-JUL-16 REMARK 200 TEMPERATURE (KELVIN) : 99 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ALS REMARK 200 BEAMLINE : 8.2.2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.997 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 8742 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.900 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.4 REMARK 200 DATA REDUNDANCY : 9.100 REMARK 200 R MERGE (I) : 0.06300 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 35.3000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.90 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.97 REMARK 200 COMPLETENESS FOR SHELL (%) : 94.4 REMARK 200 DATA REDUNDANCY IN SHELL : 4.50 REMARK 200 R MERGE FOR SHELL (I) : 0.46400 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.860 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 5DHC REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 58.15 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.94 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.05 M MAGNESIUM CHLORIDE, 0.1 M REMARK 280 IMIDAZOLE PH 6.5, 1.0 M SODIUM ACETATE TRIHYDRATE, VAPOR REMARK 280 DIFFUSION, SITTING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 3 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z REMARK 290 3555 -X+Y,-X,Z REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z REMARK 290 6555 -X,-X+Y,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1180 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 5450 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -3.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 MG MG A 102 LIES ON A SPECIAL POSITION. REMARK 375 MG MG B 102 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 201 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 209 LIES ON A SPECIAL POSITION. REMARK 375 HOH B 201 LIES ON A SPECIAL POSITION. REMARK 375 HOH B 213 LIES ON A SPECIAL POSITION. REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 LCC A 1 O3' LCC A 2 P 0.078 REMARK 500 LCC A 2 O3' LCC A 3 P 0.088 REMARK 500 LCC B 2 O3' LCC B 3 P 0.081 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 LCC A 1 C3' - O3' - P ANGL. DEV. = 12.1 DEGREES REMARK 500 LCC A 2 C3' - O3' - P ANGL. DEV. = 15.8 DEGREES REMARK 500 LCC B 1 C3' - O3' - P ANGL. DEV. = 12.5 DEGREES REMARK 500 LCC B 2 C3' - O3' - P ANGL. DEV. = 15.3 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 210 DISTANCE = 8.01 ANGSTROMS REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG B 102 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GP3 A 101 O3D REMARK 620 2 GP3 A 101 O2D 62.8 REMARK 620 3 GP3 A 101 O3D 0.0 62.8 REMARK 620 4 GP3 A 101 O2D 62.8 0.0 62.8 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG B 103 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GP3 A 101 O2A REMARK 620 2 GP3 A 101 O2B 83.5 REMARK 620 3 GP3 A 101 O2G 74.4 78.6 REMARK 620 N 1 2 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG B 104 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GP3 A 101 O2A REMARK 620 2 GP3 A 101 O3E 59.1 REMARK 620 3 GP3 A 101 O2E 54.7 15.1 REMARK 620 4 HOH A 208 O 73.5 25.7 19.7 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 102 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GP3 B 101 O3D REMARK 620 2 GP3 B 101 O2D 62.3 REMARK 620 3 GP3 B 101 O3D 106.3 147.8 REMARK 620 4 GP3 B 101 O2D 147.7 90.0 106.0 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 103 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GP3 B 101 O2B REMARK 620 2 GP3 B 101 O2A 84.1 REMARK 620 N 1 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 104 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GP3 B 101 O2A REMARK 620 2 GP3 B 101 O2E 101.9 REMARK 620 3 GP3 B 101 O3E 156.9 69.7 REMARK 620 N 1 2 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GP3 A 101 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MG A 102 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MG A 103 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MG A 104 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GP3 B 101 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MG B 102 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MG B 103 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MG B 104 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 5UED RELATED DB: PDB REMARK 900 RELATED ID: 5UEF RELATED DB: PDB REMARK 900 RELATED ID: 5UEG RELATED DB: PDB DBREF 5UEE A 1 14 PDB 5UEE 5UEE 1 14 DBREF 5UEE B 1 14 PDB 5UEE 5UEE 1 14 SEQRES 1 A 14 LCC LCC LCC G A C U U A A G U C SEQRES 2 A 14 G SEQRES 1 B 14 LCC LCC LCC G A C U U A A G U C SEQRES 2 B 14 G HET LCC A 1 19 HET LCC A 2 22 HET LCC A 3 22 HET LCC B 1 19 HET LCC B 2 22 HET LCC B 3 22 HET GP3 A 101 51 HET MG A 102 1 HET MG A 103 1 HET MG A 104 1 HET GP3 B 101 51 HET MG B 102 1 HET MG B 103 1 HET MG B 104 1 HETNAM LCC [(1R,3R,4R,7S)-7-HYDROXY-3-(5-METHYLCYTOSIN-1-YL)-2,5- HETNAM 2 LCC DIOXABICYCLO[2.2.1]HEPT-1-YL]METHYL DIHYDROGEN HETNAM 3 LCC PHOSPHATE HETNAM GP3 DIGUANOSINE-5'-TRIPHOSPHATE HETNAM MG MAGNESIUM ION FORMUL 1 LCC 6(C11 H16 N3 O8 P) FORMUL 3 GP3 2(C20 H27 N10 O18 P3) FORMUL 4 MG 6(MG 2+) FORMUL 11 HOH *23(H2 O) LINK O3' LCC A 1 P LCC A 2 1555 1555 1.69 LINK O3' LCC A 2 P LCC A 3 1555 1555 1.70 LINK O3' LCC A 3 P G A 4 1555 1555 1.66 LINK O3' LCC B 1 P LCC B 2 1555 1555 1.64 LINK O3' LCC B 2 P LCC B 3 1555 1555 1.69 LINK O3' LCC B 3 P G B 4 1555 1555 1.61 LINK O3D GP3 A 101 MG MG B 102 1555 1555 2.37 LINK O2D GP3 A 101 MG MG B 102 1555 1555 2.40 LINK O3D GP3 A 101 MG MG B 102 1555 3565 2.34 LINK O2D GP3 A 101 MG MG B 102 1555 2665 2.37 LINK O2A GP3 A 101 MG MG B 103 1555 1555 2.32 LINK O2B GP3 A 101 MG MG B 103 1555 1555 2.54 LINK O2G GP3 A 101 MG MG B 103 1555 1555 2.98 LINK O2A GP3 A 101 MG MG B 104 1555 1555 2.27 LINK O3E GP3 A 101 MG MG B 104 1555 3565 2.34 LINK O2E GP3 A 101 MG MG B 104 1555 3565 2.35 LINK MG MG A 102 O3D GP3 B 101 1555 1555 2.40 LINK MG MG A 102 O2D GP3 B 101 1555 1555 2.38 LINK MG MG A 102 O3D GP3 B 101 1555 3565 2.37 LINK MG MG A 102 O2D GP3 B 101 1555 2665 2.35 LINK MG MG A 103 O2B GP3 B 101 1555 1555 2.39 LINK MG MG A 103 O2A GP3 B 101 1555 1555 2.41 LINK MG MG A 104 O2A GP3 B 101 1555 1555 2.21 LINK MG MG A 104 O2E GP3 B 101 1555 3565 2.33 LINK MG MG A 104 O3E GP3 B 101 1555 3565 2.33 LINK O HOH A 208 MG MG B 104 1555 1555 2.93 SITE 1 AC1 10 LCC A 1 LCC A 2 LCC A 3 HOH A 202 SITE 2 AC1 10 HOH A 205 HOH A 208 G B 14 MG B 102 SITE 3 AC1 10 MG B 103 MG B 104 SITE 1 AC2 1 GP3 B 101 SITE 1 AC3 2 MG A 104 GP3 B 101 SITE 1 AC4 2 MG A 103 GP3 B 101 SITE 1 AC5 12 G A 14 MG A 102 MG A 103 MG A 104 SITE 2 AC5 12 HOH A 204 LCC B 1 LCC B 2 LCC B 3 SITE 3 AC5 12 HOH B 202 HOH B 203 HOH B 206 HOH B 207 SITE 1 AC6 1 GP3 A 101 SITE 1 AC7 2 GP3 A 101 MG B 104 SITE 1 AC8 3 GP3 A 101 HOH A 208 MG B 103 CRYST1 46.964 46.964 83.103 90.00 90.00 120.00 P 3 2 1 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.021293 0.012293 0.000000 0.00000 SCALE2 0.000000 0.024587 0.000000 0.00000 SCALE3 0.000000 0.000000 0.012033 0.00000 HETATM 1 O5' LCC A 1 -12.739 11.359 79.543 1.00 33.72 O HETATM 2 C5' LCC A 1 -13.712 12.383 79.689 1.00 30.80 C HETATM 3 C4' LCC A 1 -12.970 13.668 80.016 1.00 29.83 C HETATM 4 O4' LCC A 1 -12.109 13.707 81.174 1.00 32.72 O HETATM 5 C1' LCC A 1 -11.306 14.878 80.996 1.00 31.83 C HETATM 6 N1 LCC A 1 -9.880 14.453 81.118 1.00 29.69 N HETATM 7 C6 LCC A 1 -9.504 13.085 81.035 1.00 27.41 C HETATM 8 C5 LCC A 1 -8.173 12.760 81.222 1.00 31.00 C HETATM 9 C5M LCC A 1 -7.733 11.380 81.165 1.00 34.45 C HETATM 10 C4 LCC A 1 -7.268 13.798 81.480 1.00 28.88 C HETATM 11 N4 LCC A 1 -6.023 13.433 81.655 1.00 27.12 N HETATM 12 N3 LCC A 1 -7.650 15.094 81.566 1.00 25.97 N HETATM 13 C2 LCC A 1 -8.955 15.418 81.393 1.00 29.26 C HETATM 14 O2 LCC A 1 -9.302 16.590 81.455 1.00 26.56 O HETATM 15 C3' LCC A 1 -11.919 14.057 79.026 1.00 31.44 C HETATM 16 C2' LCC A 1 -11.717 15.393 79.665 1.00 31.76 C HETATM 17 O2' LCC A 1 -13.043 15.945 79.804 1.00 32.00 O HETATM 18 O3' LCC A 1 -12.499 14.219 77.832 1.00 29.13 O HETATM 19 C6' LCC A 1 -13.930 14.774 80.042 1.00 29.85 C HETATM 20 O5' LCC A 2 -11.245 16.162 76.573 1.00 30.13 O HETATM 21 C5' LCC A 2 -12.079 17.311 76.568 1.00 28.99 C HETATM 22 C4' LCC A 2 -11.132 18.416 76.909 1.00 27.79 C HETATM 23 O4' LCC A 2 -10.434 18.216 78.135 1.00 28.94 O HETATM 24 C1' LCC A 2 -9.320 19.100 78.082 1.00 28.17 C HETATM 25 N1 LCC A 2 -8.137 18.271 78.262 1.00 26.83 N HETATM 26 C6 LCC A 2 -8.155 16.852 78.174 1.00 29.30 C HETATM 27 C5 LCC A 2 -7.006 16.117 78.366 1.00 28.31 C HETATM 28 C5M LCC A 2 -7.047 14.691 78.169 1.00 30.48 C HETATM 29 C4 LCC A 2 -5.853 16.867 78.698 1.00 28.66 C HETATM 30 N4 LCC A 2 -4.768 16.189 78.911 1.00 26.70 N HETATM 31 N3 LCC A 2 -5.858 18.225 78.868 1.00 25.04 N HETATM 32 C2 LCC A 2 -6.991 18.908 78.629 1.00 27.60 C HETATM 33 O2 LCC A 2 -6.989 20.131 78.694 1.00 27.75 O HETATM 34 C3' LCC A 2 -9.942 18.590 76.045 1.00 30.32 C HETATM 35 C2' LCC A 2 -9.456 19.780 76.768 1.00 27.93 C HETATM 36 O2' LCC A 2 -10.660 20.617 76.822 1.00 29.11 O HETATM 37 O3' LCC A 2 -10.240 18.901 74.745 1.00 30.48 O HETATM 38 C6' LCC A 2 -11.841 19.714 76.927 1.00 30.47 C HETATM 39 P LCC A 2 -11.868 14.626 76.324 1.00 32.38 P HETATM 40 O1P LCC A 2 -10.573 13.769 76.243 1.00 28.53 O HETATM 41 O2P LCC A 2 -12.750 14.682 75.189 1.00 27.67 O HETATM 42 O5' LCC A 3 -8.355 19.898 73.602 1.00 26.03 O HETATM 43 C5' LCC A 3 -8.753 21.363 73.544 1.00 23.65 C HETATM 44 C4' LCC A 3 -7.479 22.128 73.920 1.00 25.55 C HETATM 45 O4' LCC A 3 -6.993 21.676 75.161 1.00 26.87 O HETATM 46 C1' LCC A 3 -5.625 22.046 75.189 1.00 25.04 C HETATM 47 N1 LCC A 3 -4.845 20.840 75.406 1.00 24.90 N HETATM 48 C6 LCC A 3 -5.405 19.554 75.294 1.00 26.93 C HETATM 49 C5 LCC A 3 -4.615 18.424 75.488 1.00 26.58 C HETATM 50 C5M LCC A 3 -5.192 17.129 75.313 1.00 28.63 C HETATM 51 C4 LCC A 3 -3.316 18.640 75.923 1.00 26.63 C HETATM 52 N4 LCC A 3 -2.614 17.588 76.153 1.00 23.68 N HETATM 53 N3 LCC A 3 -2.762 19.866 76.029 1.00 23.21 N HETATM 54 C2 LCC A 3 -3.520 20.963 75.762 1.00 25.11 C HETATM 55 O2 LCC A 3 -3.021 22.107 75.911 1.00 26.78 O HETATM 56 C3' LCC A 3 -6.260 21.819 73.046 1.00 25.93 C HETATM 57 C2' LCC A 3 -5.431 22.691 73.884 1.00 27.20 C HETATM 58 O2' LCC A 3 -6.136 23.969 73.844 1.00 28.48 O HETATM 59 O3' LCC A 3 -6.387 22.349 71.700 1.00 28.10 O HETATM 60 C6' LCC A 3 -7.611 23.653 73.825 1.00 28.17 C HETATM 61 P LCC A 3 -9.440 18.769 73.257 1.00 27.98 P HETATM 62 O1P LCC A 3 -8.583 17.602 73.356 1.00 25.81 O HETATM 63 O2P LCC A 3 -10.298 19.204 72.151 1.00 30.45 O