data_5UEG # _entry.id 5UEG # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.379 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 5UEG pdb_00005ueg 10.2210/pdb5ueg/pdb WWPDB D_1000225741 ? ? # loop_ _pdbx_database_related.content_type _pdbx_database_related.db_id _pdbx_database_related.db_name _pdbx_database_related.details unspecified 5UED PDB . unspecified 5UEE PDB . unspecified 5UEF PDB . # _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.entry_id 5UEG _pdbx_database_status.recvd_initial_deposition_date 2017-01-02 _pdbx_database_status.SG_entry N _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_nmr_data ? # loop_ _audit_author.name _audit_author.pdbx_ordinal _audit_author.identifier_ORCID 'Zhang, W.' 1 ? 'Tam, C.P.' 2 ? 'Szostak, J.W.' 3 ? # _citation.abstract ? _citation.abstract_id_CAS ? _citation.book_id_ISBN ? _citation.book_publisher ? _citation.book_publisher_city ? _citation.book_title ? _citation.coordinate_linkage ? _citation.country US _citation.database_id_Medline ? _citation.details ? _citation.id primary _citation.journal_abbrev 'Proc. Natl. Acad. Sci. U.S.A.' _citation.journal_id_ASTM PNASA6 _citation.journal_id_CSD 0040 _citation.journal_id_ISSN 1091-6490 _citation.journal_full ? _citation.journal_issue ? _citation.journal_volume 114 _citation.language ? _citation.page_first 7659 _citation.page_last 7664 _citation.title 'Insight into the mechanism of nonenzymatic RNA primer extension from the structure of an RNA-GpppG complex.' _citation.year 2017 _citation.database_id_CSD ? _citation.pdbx_database_id_DOI 10.1073/pnas.1704006114 _citation.pdbx_database_id_PubMed 28673998 _citation.unpublished_flag ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Zhang, W.' 1 ? primary 'Tam, C.P.' 2 ? primary 'Walton, T.' 3 ? primary 'Fahrenbach, A.C.' 4 ? primary 'Birrane, G.' 5 ? primary 'Szostak, J.W.' 6 ? # _cell.angle_alpha 90.00 _cell.angle_alpha_esd ? _cell.angle_beta 90.00 _cell.angle_beta_esd ? _cell.angle_gamma 120.00 _cell.angle_gamma_esd ? _cell.entry_id 5UEG _cell.details ? _cell.formula_units_Z ? _cell.length_a 48.416 _cell.length_a_esd ? _cell.length_b 48.416 _cell.length_b_esd ? _cell.length_c 81.965 _cell.length_c_esd ? _cell.volume ? _cell.volume_esd ? _cell.Z_PDB 12 _cell.reciprocal_angle_alpha ? _cell.reciprocal_angle_beta ? _cell.reciprocal_angle_gamma ? _cell.reciprocal_angle_alpha_esd ? _cell.reciprocal_angle_beta_esd ? _cell.reciprocal_angle_gamma_esd ? _cell.reciprocal_length_a ? _cell.reciprocal_length_b ? _cell.reciprocal_length_c ? _cell.reciprocal_length_a_esd ? _cell.reciprocal_length_b_esd ? _cell.reciprocal_length_c_esd ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 5UEG _symmetry.cell_setting ? _symmetry.Int_Tables_number 143 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 3' _symmetry.pdbx_full_space_group_name_H-M ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer syn ;RNA (5'-R(*(LCC)P*(LCC)P*(LCC)P*GP*AP*CP*UP*UP*AP*AP*GP*UP*CP*G)-3') ; 4500.794 4 ? ? ? ? 2 non-polymer man ;[[(2~{R},3~{S},4~{R},5~{R})-5-(2-azanyl-6-oxidanylidene-1~{H}-purin-9-yl)-3,4-bis(oxidanyl)oxolan-2-yl]methoxy-oxidanyl-phosphoryl] [[[(2~{R},3~{S},4~{R},5~{R})-5-(2-azanyl-6-oxidanylidene-1~{H}-purin-9-yl)-3,4-bis(oxidanyl)oxolan-2-yl]methoxy-oxidanyl-phosphoryl]oxy-oxidanyl-phosphoryl] hydrogen phosphate ; 868.386 4 ? ? ? ? # _entity_poly.entity_id 1 _entity_poly.type polyribonucleotide _entity_poly.nstd_linkage no _entity_poly.nstd_monomer yes _entity_poly.pdbx_seq_one_letter_code '(LCC)(LCC)(LCC)GACUUAAGUCG' _entity_poly.pdbx_seq_one_letter_code_can NNNGACUUAAGUCG _entity_poly.pdbx_strand_id A,B,C,D _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 LCC n 1 2 LCC n 1 3 LCC n 1 4 G n 1 5 A n 1 6 C n 1 7 U n 1 8 U n 1 9 A n 1 10 A n 1 11 G n 1 12 U n 1 13 C n 1 14 G n # _pdbx_entity_src_syn.entity_id 1 _pdbx_entity_src_syn.pdbx_src_id 1 _pdbx_entity_src_syn.pdbx_alt_source_flag sample _pdbx_entity_src_syn.pdbx_beg_seq_num 1 _pdbx_entity_src_syn.pdbx_end_seq_num 14 _pdbx_entity_src_syn.organism_scientific 'synthetic construct' _pdbx_entity_src_syn.organism_common_name ? _pdbx_entity_src_syn.ncbi_taxonomy_id 32630 _pdbx_entity_src_syn.details ? # _struct_ref.id 1 _struct_ref.db_name PDB _struct_ref.db_code 5UEG _struct_ref.pdbx_db_accession 5UEG _struct_ref.pdbx_db_isoform ? _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ? _struct_ref.pdbx_align_begin 1 # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 5UEG A 1 ? 14 ? 5UEG 1 ? 14 ? 1 14 2 1 5UEG B 1 ? 14 ? 5UEG 1 ? 14 ? 1 14 3 1 5UEG C 1 ? 14 ? 5UEG 1 ? 14 ? 1 14 4 1 5UEG D 1 ? 14 ? 5UEG 1 ? 14 ? 1 14 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight 86P non-polymer . ;[[(2~{R},3~{S},4~{R},5~{R})-5-(2-azanyl-6-oxidanylidene-1~{H}-purin-9-yl)-3,4-bis(oxidanyl)oxolan-2-yl]methoxy-oxidanyl-phosphoryl] [[[(2~{R},3~{S},4~{R},5~{R})-5-(2-azanyl-6-oxidanylidene-1~{H}-purin-9-yl)-3,4-bis(oxidanyl)oxolan-2-yl]methoxy-oxidanyl-phosphoryl]oxy-oxidanyl-phosphoryl] hydrogen phosphate ; ? 'C20 H28 N10 O21 P4' 868.386 A 'RNA linking' y "ADENOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O7 P' 347.221 C 'RNA linking' y "CYTIDINE-5'-MONOPHOSPHATE" ? 'C9 H14 N3 O8 P' 323.197 G 'RNA linking' y "GUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O8 P' 363.221 LCC 'RNA linking' . '[(1R,3R,4R,7S)-7-HYDROXY-3-(5-METHYLCYTOSIN-1-YL)-2,5-DIOXABICYCLO[2.2.1]HEPT-1-YL]METHYL DIHYDROGEN PHOSPHATE' ? 'C11 H16 N3 O8 P' 349.234 U 'RNA linking' y "URIDINE-5'-MONOPHOSPHATE" ? 'C9 H13 N2 O9 P' 324.181 # _exptl.absorpt_coefficient_mu ? _exptl.absorpt_correction_T_max ? _exptl.absorpt_correction_T_min ? _exptl.absorpt_correction_type ? _exptl.absorpt_process_details ? _exptl.entry_id 5UEG _exptl.crystals_number 1 _exptl.details ? _exptl.method 'X-RAY DIFFRACTION' _exptl.method_details ? # _exptl_crystal.colour ? _exptl_crystal.density_diffrn ? _exptl_crystal.density_Matthews 3.08 _exptl_crystal.density_method ? _exptl_crystal.density_percent_sol 60.08 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.id 1 _exptl_crystal.preparation ? _exptl_crystal.size_max ? _exptl_crystal.size_mid ? _exptl_crystal.size_min ? _exptl_crystal.size_rad ? _exptl_crystal.colour_lustre ? _exptl_crystal.colour_modifier ? _exptl_crystal.colour_primary ? _exptl_crystal.density_meas ? _exptl_crystal.density_meas_esd ? _exptl_crystal.density_meas_gt ? _exptl_crystal.density_meas_lt ? _exptl_crystal.density_meas_temp ? _exptl_crystal.density_meas_temp_esd ? _exptl_crystal.density_meas_temp_gt ? _exptl_crystal.density_meas_temp_lt ? _exptl_crystal.pdbx_crystal_image_url ? _exptl_crystal.pdbx_crystal_image_format ? _exptl_crystal.pdbx_mosaicity ? _exptl_crystal.pdbx_mosaicity_esd ? # _exptl_crystal_grow.apparatus ? _exptl_crystal_grow.atmosphere ? _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.details ? _exptl_crystal_grow.method 'VAPOR DIFFUSION, SITTING DROP' _exptl_crystal_grow.method_ref ? _exptl_crystal_grow.pH 6.5 _exptl_crystal_grow.pressure ? _exptl_crystal_grow.pressure_esd ? _exptl_crystal_grow.seeding ? _exptl_crystal_grow.seeding_ref ? _exptl_crystal_grow.temp 293 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.temp_esd ? _exptl_crystal_grow.time ? _exptl_crystal_grow.pdbx_details '0.05 M Magnesium chloride, 1.2 M Lithium sulfate, 50 mM MES pH 6.5, 2 mM Cobalt (II) chloride' _exptl_crystal_grow.pdbx_pH_range ? # _diffrn.ambient_environment ? _diffrn.ambient_temp 99 _diffrn.ambient_temp_details ? _diffrn.ambient_temp_esd ? _diffrn.crystal_id 1 _diffrn.crystal_support ? _diffrn.crystal_treatment ? _diffrn.details ? _diffrn.id 1 _diffrn.ambient_pressure ? _diffrn.ambient_pressure_esd ? _diffrn.ambient_pressure_gt ? _diffrn.ambient_pressure_lt ? _diffrn.ambient_temp_gt ? _diffrn.ambient_temp_lt ? # _diffrn_detector.details ? _diffrn_detector.detector CCD _diffrn_detector.diffrn_id 1 _diffrn_detector.type 'ADSC QUANTUM 315' _diffrn_detector.area_resol_mean ? _diffrn_detector.dtime ? _diffrn_detector.pdbx_frames_total ? _diffrn_detector.pdbx_collection_time_total ? _diffrn_detector.pdbx_collection_date 2016-10-28 # _diffrn_radiation.collimation ? _diffrn_radiation.diffrn_id 1 _diffrn_radiation.filter_edge ? _diffrn_radiation.inhomogeneity ? _diffrn_radiation.monochromator ? _diffrn_radiation.polarisn_norm ? _diffrn_radiation.polarisn_ratio ? _diffrn_radiation.probe ? _diffrn_radiation.type ? _diffrn_radiation.xray_symbol ? _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.pdbx_wavelength_list ? _diffrn_radiation.pdbx_wavelength ? _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_analyzer ? _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 0.995 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.current ? _diffrn_source.details ? _diffrn_source.diffrn_id 1 _diffrn_source.power ? _diffrn_source.size ? _diffrn_source.source SYNCHROTRON _diffrn_source.target ? _diffrn_source.type 'ALS BEAMLINE 8.2.1' _diffrn_source.voltage ? _diffrn_source.take-off_angle ? _diffrn_source.pdbx_wavelength_list 0.995 _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_synchrotron_beamline 8.2.1 _diffrn_source.pdbx_synchrotron_site ALS # _reflns.B_iso_Wilson_estimate ? _reflns.entry_id 5UEG _reflns.data_reduction_details ? _reflns.data_reduction_method ? _reflns.d_resolution_high 2.60 _reflns.d_resolution_low 50 _reflns.details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.number_all ? _reflns.number_obs 6425 _reflns.observed_criterion ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.observed_criterion_I_max ? _reflns.observed_criterion_I_min ? _reflns.observed_criterion_sigma_F ? _reflns.observed_criterion_sigma_I ? _reflns.percent_possible_obs 96.6 _reflns.R_free_details ? _reflns.Rmerge_F_all ? _reflns.Rmerge_F_obs ? _reflns.Friedel_coverage ? _reflns.number_gt ? _reflns.threshold_expression ? _reflns.pdbx_redundancy 5.1 _reflns.pdbx_Rmerge_I_obs 0.100 _reflns.pdbx_Rmerge_I_all ? _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_av_sigmaI ? _reflns.pdbx_netI_over_sigmaI 15.14 _reflns.pdbx_res_netI_over_av_sigmaI_2 ? _reflns.pdbx_res_netI_over_sigmaI_2 ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_d_res_high_opt ? _reflns.pdbx_d_res_low_opt ? _reflns.pdbx_d_res_opt_method ? _reflns.phase_calculation_details ? _reflns.pdbx_Rrim_I_all ? _reflns.pdbx_Rpim_I_all ? _reflns.pdbx_d_opt ? _reflns.pdbx_number_measured_all ? _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 _reflns.pdbx_CC_half 0.978 _reflns.pdbx_R_split ? # _reflns_shell.d_res_high 2.60 _reflns_shell.d_res_low 2.69 _reflns_shell.meanI_over_sigI_all ? _reflns_shell.meanI_over_sigI_obs 1.26 _reflns_shell.number_measured_all ? _reflns_shell.number_measured_obs ? _reflns_shell.number_possible ? _reflns_shell.number_unique_all ? _reflns_shell.number_unique_obs ? _reflns_shell.percent_possible_all 74.8 _reflns_shell.percent_possible_obs ? _reflns_shell.Rmerge_F_all ? _reflns_shell.Rmerge_F_obs ? _reflns_shell.Rmerge_I_all ? _reflns_shell.Rmerge_I_obs 0.554 _reflns_shell.meanI_over_sigI_gt ? _reflns_shell.meanI_over_uI_all ? _reflns_shell.meanI_over_uI_gt ? _reflns_shell.number_measured_gt ? _reflns_shell.number_unique_gt ? _reflns_shell.percent_possible_gt ? _reflns_shell.Rmerge_F_gt ? _reflns_shell.Rmerge_I_gt ? _reflns_shell.pdbx_redundancy 3.6 _reflns_shell.pdbx_Rsym_value ? _reflns_shell.pdbx_chi_squared ? _reflns_shell.pdbx_netI_over_sigmaI_all ? _reflns_shell.pdbx_netI_over_sigmaI_obs ? _reflns_shell.pdbx_Rrim_I_all ? _reflns_shell.pdbx_Rpim_I_all ? _reflns_shell.pdbx_rejects ? _reflns_shell.pdbx_ordinal 1 _reflns_shell.pdbx_diffrn_id 1 _reflns_shell.pdbx_CC_half 0.916 _reflns_shell.pdbx_R_split ? # _refine.aniso_B[1][1] -0.01 _refine.aniso_B[1][2] 0.00 _refine.aniso_B[1][3] 0.00 _refine.aniso_B[2][2] -0.01 _refine.aniso_B[2][3] 0.00 _refine.aniso_B[3][3] 0.03 _refine.B_iso_max ? _refine.B_iso_mean 84.063 _refine.B_iso_min ? _refine.correlation_coeff_Fo_to_Fc 0.934 _refine.correlation_coeff_Fo_to_Fc_free 0.912 _refine.details 'HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS' _refine.diff_density_max ? _refine.diff_density_max_esd ? _refine.diff_density_min ? _refine.diff_density_min_esd ? _refine.diff_density_rms ? _refine.diff_density_rms_esd ? _refine.entry_id 5UEG _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.ls_abs_structure_details ? _refine.ls_abs_structure_Flack ? _refine.ls_abs_structure_Flack_esd ? _refine.ls_abs_structure_Rogers ? _refine.ls_abs_structure_Rogers_esd ? _refine.ls_d_res_high 2.60 _refine.ls_d_res_low 50 _refine.ls_extinction_coef ? _refine.ls_extinction_coef_esd ? _refine.ls_extinction_expression ? _refine.ls_extinction_method ? _refine.ls_goodness_of_fit_all ? _refine.ls_goodness_of_fit_all_esd ? _refine.ls_goodness_of_fit_obs ? _refine.ls_goodness_of_fit_obs_esd ? _refine.ls_hydrogen_treatment ? _refine.ls_matrix_type ? _refine.ls_number_constraints ? _refine.ls_number_parameters ? _refine.ls_number_reflns_all ? _refine.ls_number_reflns_obs 6081 _refine.ls_number_reflns_R_free 325 _refine.ls_number_reflns_R_work ? _refine.ls_number_restraints ? _refine.ls_percent_reflns_obs 96.33 _refine.ls_percent_reflns_R_free 5.1 _refine.ls_R_factor_all ? _refine.ls_R_factor_obs 0.21197 _refine.ls_R_factor_R_free 0.30148 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_R_factor_R_work 0.20764 _refine.ls_R_Fsqd_factor_obs ? _refine.ls_R_I_factor_obs ? _refine.ls_redundancy_reflns_all ? _refine.ls_redundancy_reflns_obs ? _refine.ls_restrained_S_all ? _refine.ls_restrained_S_obs ? _refine.ls_shift_over_esd_max ? _refine.ls_shift_over_esd_mean ? _refine.ls_structure_factor_coef ? _refine.ls_weighting_details ? _refine.ls_weighting_scheme ? _refine.ls_wR_factor_all ? _refine.ls_wR_factor_obs ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.occupancy_max ? _refine.occupancy_min ? _refine.solvent_model_details ? _refine.solvent_model_param_bsol ? _refine.solvent_model_param_ksol ? _refine.ls_R_factor_gt ? _refine.ls_goodness_of_fit_gt ? _refine.ls_goodness_of_fit_ref ? _refine.ls_shift_over_su_max ? _refine.ls_shift_over_su_max_lt ? _refine.ls_shift_over_su_mean ? _refine.ls_shift_over_su_mean_lt ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F ? _refine.pdbx_ls_sigma_Fsqd ? _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_starting_model 5dhc _refine.pdbx_stereochemistry_target_values ? _refine.pdbx_R_Free_selection_details RANDOM _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free 0.418 _refine.pdbx_solvent_vdw_probe_radii 1.20 _refine.pdbx_solvent_ion_probe_radii 0.80 _refine.pdbx_solvent_shrinkage_radii 0.80 _refine.pdbx_real_space_R ? _refine.pdbx_density_correlation ? _refine.pdbx_pd_number_of_powder_patterns ? _refine.pdbx_pd_number_of_points ? _refine.pdbx_pd_meas_number_of_points ? _refine.pdbx_pd_proc_ls_prof_R_factor ? _refine.pdbx_pd_proc_ls_prof_wR_factor ? _refine.pdbx_pd_Marquardt_correlation_coeff ? _refine.pdbx_pd_Fsqrd_R_factor ? _refine.pdbx_pd_ls_matrix_band_width ? _refine.pdbx_overall_phase_error ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_diffrn_id 1 _refine.overall_SU_B 18.124 _refine.overall_SU_ML 0.337 _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_average_fsc_overall ? _refine.pdbx_average_fsc_work ? _refine.pdbx_average_fsc_free ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id 1 _refine_hist.pdbx_number_atoms_protein 0 _refine_hist.pdbx_number_atoms_nucleic_acid 1192 _refine_hist.pdbx_number_atoms_ligand 440 _refine_hist.number_atoms_solvent 0 _refine_hist.number_atoms_total 1632 _refine_hist.d_res_high 2.60 _refine_hist.d_res_low 50 # loop_ _refine_ls_restr.pdbx_refine_id _refine_ls_restr.criterion _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.number _refine_ls_restr.rejects _refine_ls_restr.type _refine_ls_restr.weight _refine_ls_restr.pdbx_restraint_function 'X-RAY DIFFRACTION' ? 0.018 0.017 1804 ? r_bond_refined_d ? ? 'X-RAY DIFFRACTION' ? 0.020 0.024 752 ? r_bond_other_d ? ? 'X-RAY DIFFRACTION' ? 3.009 2.037 2812 ? r_angle_refined_deg ? ? 'X-RAY DIFFRACTION' ? 3.684 3.272 1812 ? r_angle_other_deg ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? r_dihedral_angle_1_deg ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? r_dihedral_angle_2_deg ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? r_dihedral_angle_3_deg ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? r_dihedral_angle_4_deg ? ? 'X-RAY DIFFRACTION' ? 0.220 0.200 328 ? r_chiral_restr ? ? 'X-RAY DIFFRACTION' ? 0.010 0.021 888 ? r_gen_planes_refined ? ? 'X-RAY DIFFRACTION' ? 0.002 0.022 328 ? r_gen_planes_other ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? r_nbd_refined ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? r_nbd_other ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? r_nbtor_refined ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? r_nbtor_other ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? r_xyhbond_nbd_refined ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? r_xyhbond_nbd_other ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? r_metal_ion_refined ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? r_metal_ion_other ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? r_symmetry_vdw_refined ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? r_symmetry_vdw_other ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? r_symmetry_hbond_refined ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? r_symmetry_hbond_other ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? r_symmetry_metal_ion_refined ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? r_symmetry_metal_ion_other ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? r_mcbond_it ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? r_mcbond_other ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? r_mcangle_it ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? r_mcangle_other ? ? 'X-RAY DIFFRACTION' ? 6.837 8.989 1804 ? r_scbond_it ? ? 'X-RAY DIFFRACTION' ? 6.835 8.988 1805 ? r_scbond_other ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? r_scangle_it ? ? 'X-RAY DIFFRACTION' ? 9.504 13.459 2813 ? r_scangle_other ? ? 'X-RAY DIFFRACTION' ? 11.524 89.295 2423 ? r_long_range_B_refined ? ? 'X-RAY DIFFRACTION' ? 11.522 89.293 2424 ? r_long_range_B_other ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? r_rigid_bond_restr ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? r_sphericity_free ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? r_sphericity_bonded ? ? # _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_ls_shell.d_res_high 2.600 _refine_ls_shell.d_res_low 2.668 _refine_ls_shell.number_reflns_all ? _refine_ls_shell.number_reflns_obs ? _refine_ls_shell.number_reflns_R_free 16 _refine_ls_shell.number_reflns_R_work 387 _refine_ls_shell.percent_reflns_obs 75.19 _refine_ls_shell.percent_reflns_R_free ? _refine_ls_shell.R_factor_all ? _refine_ls_shell.R_factor_obs ? _refine_ls_shell.R_factor_R_free 0.582 _refine_ls_shell.R_factor_R_free_error ? _refine_ls_shell.R_factor_R_work 0.508 _refine_ls_shell.redundancy_reflns_all ? _refine_ls_shell.redundancy_reflns_obs ? _refine_ls_shell.wR_factor_all ? _refine_ls_shell.wR_factor_obs ? _refine_ls_shell.wR_factor_R_free ? _refine_ls_shell.wR_factor_R_work ? _refine_ls_shell.pdbx_total_number_of_bins_used 20 _refine_ls_shell.pdbx_phase_error ? _refine_ls_shell.pdbx_fsc_work ? _refine_ls_shell.pdbx_fsc_free ? # _struct.entry_id 5UEG _struct.title ;RNA primer-template complex with guanosine dinucleotide G(5')pppp(5')G ligand ; _struct.pdbx_model_details ? _struct.pdbx_formula_weight ? _struct.pdbx_formula_weight_method ? _struct.pdbx_model_type_details ? _struct.pdbx_CASP_flag N # _struct_keywords.entry_id 5UEG _struct_keywords.text 'RNA, dinucleotide' _struct_keywords.pdbx_keywords RNA # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 1 ? C N N 1 ? D N N 1 ? E N N 2 ? F N N 2 ? G N N 2 ? H N N 2 ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role covale1 covale both ? A LCC 1 "O3'" ? ? ? 1_555 A LCC 2 P ? ? A LCC 1 A LCC 2 1_555 ? ? ? ? ? ? ? 1.694 ? ? covale2 covale both ? A LCC 2 "O3'" ? ? ? 1_555 A LCC 3 P ? ? A LCC 2 A LCC 3 1_555 ? ? ? ? ? ? ? 1.556 ? ? covale3 covale both ? A LCC 3 "O3'" ? ? ? 1_555 A G 4 P ? ? A LCC 3 A G 4 1_555 ? ? ? ? ? ? ? 1.703 ? ? covale4 covale both ? B LCC 1 "O3'" ? ? ? 1_555 B LCC 2 P ? ? B LCC 1 B LCC 2 1_555 ? ? ? ? ? ? ? 1.661 ? ? covale5 covale both ? B LCC 2 "O3'" ? ? ? 1_555 B LCC 3 P ? ? B LCC 2 B LCC 3 1_555 ? ? ? ? ? ? ? 1.701 ? ? covale6 covale both ? B LCC 3 "O3'" ? ? ? 1_555 B G 4 P ? ? B LCC 3 B G 4 1_555 ? ? ? ? ? ? ? 1.707 ? ? covale7 covale both ? C LCC 1 "O3'" ? ? ? 1_555 C LCC 2 P ? ? C LCC 1 C LCC 2 1_555 ? ? ? ? ? ? ? 1.703 ? ? covale8 covale both ? C LCC 2 "O3'" ? ? ? 1_555 C LCC 3 P ? ? C LCC 2 C LCC 3 1_555 ? ? ? ? ? ? ? 1.690 ? ? covale9 covale both ? C LCC 3 "O3'" ? ? ? 1_555 C G 4 P ? ? C LCC 3 C G 4 1_555 ? ? ? ? ? ? ? 1.643 ? ? covale10 covale both ? D LCC 1 "O3'" ? ? ? 1_555 D LCC 2 P ? ? D LCC 1 D LCC 2 1_555 ? ? ? ? ? ? ? 1.696 ? ? covale11 covale both ? D LCC 2 "O3'" ? ? ? 1_555 D LCC 3 P ? ? D LCC 2 D LCC 3 1_555 ? ? ? ? ? ? ? 1.616 ? ? covale12 covale both ? D LCC 3 "O3'" ? ? ? 1_555 D G 4 P ? ? D LCC 3 D G 4 1_555 ? ? ? ? ? ? ? 1.574 ? ? hydrog1 hydrog ? ? A G 4 N1 ? ? ? 1_555 B C 13 N3 ? ? A G 4 B C 13 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog2 hydrog ? ? A G 4 N2 ? ? ? 1_555 B C 13 O2 ? ? A G 4 B C 13 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog3 hydrog ? ? A G 4 O6 ? ? ? 1_555 B C 13 N4 ? ? A G 4 B C 13 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog4 hydrog ? ? A A 5 N1 ? ? ? 1_555 B U 12 N3 ? ? A A 5 B U 12 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog5 hydrog ? ? A A 5 N6 ? ? ? 1_555 B U 12 O4 ? ? A A 5 B U 12 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog6 hydrog ? ? A C 6 N3 ? ? ? 1_555 B G 11 N1 ? ? A C 6 B G 11 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog7 hydrog ? ? A C 6 N4 ? ? ? 1_555 B G 11 O6 ? ? A C 6 B G 11 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog8 hydrog ? ? A C 6 O2 ? ? ? 1_555 B G 11 N2 ? ? A C 6 B G 11 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog9 hydrog ? ? A U 7 N3 ? ? ? 1_555 B A 10 N1 ? ? A U 7 B A 10 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog10 hydrog ? ? A U 7 O4 ? ? ? 1_555 B A 10 N6 ? ? A U 7 B A 10 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog11 hydrog ? ? A U 8 N3 ? ? ? 1_555 B A 9 N1 ? ? A U 8 B A 9 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog12 hydrog ? ? A U 8 O4 ? ? ? 1_555 B A 9 N6 ? ? A U 8 B A 9 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog13 hydrog ? ? A A 9 N1 ? ? ? 1_555 B U 8 N3 ? ? A A 9 B U 8 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog14 hydrog ? ? A A 9 N6 ? ? ? 1_555 B U 8 O4 ? ? A A 9 B U 8 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog15 hydrog ? ? A A 10 N1 ? ? ? 1_555 B U 7 N3 ? ? A A 10 B U 7 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog16 hydrog ? ? A A 10 N6 ? ? ? 1_555 B U 7 O4 ? ? A A 10 B U 7 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog17 hydrog ? ? A G 11 N1 ? ? ? 1_555 B C 6 N3 ? ? A G 11 B C 6 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog18 hydrog ? ? A G 11 N2 ? ? ? 1_555 B C 6 O2 ? ? A G 11 B C 6 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog19 hydrog ? ? A G 11 O6 ? ? ? 1_555 B C 6 N4 ? ? A G 11 B C 6 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog20 hydrog ? ? A U 12 N3 ? ? ? 1_555 B A 5 N1 ? ? A U 12 B A 5 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog21 hydrog ? ? A U 12 O4 ? ? ? 1_555 B A 5 N6 ? ? A U 12 B A 5 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog22 hydrog ? ? A C 13 N3 ? ? ? 1_555 B G 4 N1 ? ? A C 13 B G 4 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog23 hydrog ? ? A C 13 N4 ? ? ? 1_555 B G 4 O6 ? ? A C 13 B G 4 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog24 hydrog ? ? A C 13 O2 ? ? ? 1_555 B G 4 N2 ? ? A C 13 B G 4 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog25 hydrog ? ? C G 4 N1 ? ? ? 1_555 D C 13 N3 ? ? C G 4 D C 13 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog26 hydrog ? ? C G 4 N2 ? ? ? 1_555 D C 13 O2 ? ? C G 4 D C 13 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog27 hydrog ? ? C G 4 O6 ? ? ? 1_555 D C 13 N4 ? ? C G 4 D C 13 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog28 hydrog ? ? C A 5 N1 ? ? ? 1_555 D U 12 N3 ? ? C A 5 D U 12 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog29 hydrog ? ? C A 5 N6 ? ? ? 1_555 D U 12 O4 ? ? C A 5 D U 12 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog30 hydrog ? ? C C 6 N3 ? ? ? 1_555 D G 11 N1 ? ? C C 6 D G 11 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog31 hydrog ? ? C C 6 N4 ? ? ? 1_555 D G 11 O6 ? ? C C 6 D G 11 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog32 hydrog ? ? C C 6 O2 ? ? ? 1_555 D G 11 N2 ? ? C C 6 D G 11 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog33 hydrog ? ? C U 7 N3 ? ? ? 1_555 D A 10 N1 ? ? C U 7 D A 10 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog34 hydrog ? ? C U 7 O4 ? ? ? 1_555 D A 10 N6 ? ? C U 7 D A 10 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog35 hydrog ? ? C U 8 N3 ? ? ? 1_555 D A 9 N1 ? ? C U 8 D A 9 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog36 hydrog ? ? C U 8 O4 ? ? ? 1_555 D A 9 N6 ? ? C U 8 D A 9 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog37 hydrog ? ? C A 9 N1 ? ? ? 1_555 D U 8 N3 ? ? C A 9 D U 8 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog38 hydrog ? ? C A 9 N6 ? ? ? 1_555 D U 8 O4 ? ? C A 9 D U 8 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog39 hydrog ? ? C A 10 N1 ? ? ? 1_555 D U 7 N3 ? ? C A 10 D U 7 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog40 hydrog ? ? C A 10 N6 ? ? ? 1_555 D U 7 O4 ? ? C A 10 D U 7 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog41 hydrog ? ? C G 11 N1 ? ? ? 1_555 D C 6 N3 ? ? C G 11 D C 6 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog42 hydrog ? ? C G 11 N2 ? ? ? 1_555 D C 6 O2 ? ? C G 11 D C 6 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog43 hydrog ? ? C G 11 O6 ? ? ? 1_555 D C 6 N4 ? ? C G 11 D C 6 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog44 hydrog ? ? C U 12 N3 ? ? ? 1_555 D A 5 N1 ? ? C U 12 D A 5 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog45 hydrog ? ? C U 12 O4 ? ? ? 1_555 D A 5 N6 ? ? C U 12 D A 5 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog46 hydrog ? ? C C 13 N3 ? ? ? 1_555 D G 4 N1 ? ? C C 13 D G 4 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog47 hydrog ? ? C C 13 N4 ? ? ? 1_555 D G 4 O6 ? ? C C 13 D G 4 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog48 hydrog ? ? C C 13 O2 ? ? ? 1_555 D G 4 N2 ? ? C C 13 D G 4 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? # loop_ _struct_conn_type.id _struct_conn_type.criteria _struct_conn_type.reference covale ? ? hydrog ? ? # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details AC1 Software A 86P 101 ? 6 'binding site for residue 86P A 101' AC2 Software B 86P 101 ? 6 'binding site for residue 86P B 101' AC3 Software C 86P 101 ? 6 'binding site for residue 86P C 101' AC4 Software D 86P 101 ? 6 'binding site for residue 86P D 101' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 6 LCC A 1 ? LCC A 1 . ? 1_555 ? 2 AC1 6 LCC A 2 ? LCC A 2 . ? 1_555 ? 3 AC1 6 LCC A 3 ? LCC A 3 . ? 1_555 ? 4 AC1 6 G B 14 ? G B 14 . ? 3_655 ? 5 AC1 6 G B 14 ? G B 14 . ? 1_555 ? 6 AC1 6 LCC D 1 ? LCC D 1 . ? 2_656 ? 7 AC2 6 G A 14 ? G A 14 . ? 1_555 ? 8 AC2 6 G A 14 ? G A 14 . ? 2_545 ? 9 AC2 6 LCC B 1 ? LCC B 1 . ? 1_555 ? 10 AC2 6 LCC B 2 ? LCC B 2 . ? 1_555 ? 11 AC2 6 LCC B 3 ? LCC B 3 . ? 1_555 ? 12 AC2 6 LCC C 1 ? LCC C 1 . ? 1_555 ? 13 AC3 6 LCC B 1 ? LCC B 1 . ? 1_555 ? 14 AC3 6 LCC C 1 ? LCC C 1 . ? 1_555 ? 15 AC3 6 LCC C 2 ? LCC C 2 . ? 1_555 ? 16 AC3 6 LCC C 3 ? LCC C 3 . ? 1_555 ? 17 AC3 6 G D 14 ? G D 14 . ? 1_555 ? 18 AC3 6 G D 14 ? G D 14 . ? 3_555 ? 19 AC4 6 LCC A 1 ? LCC A 1 . ? 3_664 ? 20 AC4 6 G C 14 ? G C 14 . ? 1_555 ? 21 AC4 6 G C 14 ? G C 14 . ? 2_555 ? 22 AC4 6 LCC D 1 ? LCC D 1 . ? 1_555 ? 23 AC4 6 LCC D 2 ? LCC D 2 . ? 1_555 ? 24 AC4 6 LCC D 3 ? LCC D 3 . ? 1_555 ? # _atom_sites.entry_id 5UEG _atom_sites.fract_transf_matrix[1][1] 0.020654 _atom_sites.fract_transf_matrix[1][2] 0.011925 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.023850 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.012200 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C N O P # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 LCC 1 1 1 LCC LCC A . n A 1 2 LCC 2 2 2 LCC LCC A . n A 1 3 LCC 3 3 3 LCC LCC A . n A 1 4 G 4 4 4 G G A . n A 1 5 A 5 5 5 A A A . n A 1 6 C 6 6 6 C C A . n A 1 7 U 7 7 7 U U A . n A 1 8 U 8 8 8 U U A . n A 1 9 A 9 9 9 A A A . n A 1 10 A 10 10 10 A A A . n A 1 11 G 11 11 11 G G A . n A 1 12 U 12 12 12 U U A . n A 1 13 C 13 13 13 C C A . n A 1 14 G 14 14 14 G G A . n B 1 1 LCC 1 1 1 LCC LCC B . n B 1 2 LCC 2 2 2 LCC LCC B . n B 1 3 LCC 3 3 3 LCC LCC B . n B 1 4 G 4 4 4 G G B . n B 1 5 A 5 5 5 A A B . n B 1 6 C 6 6 6 C C B . n B 1 7 U 7 7 7 U U B . n B 1 8 U 8 8 8 U U B . n B 1 9 A 9 9 9 A A B . n B 1 10 A 10 10 10 A A B . n B 1 11 G 11 11 11 G G B . n B 1 12 U 12 12 12 U U B . n B 1 13 C 13 13 13 C C B . n B 1 14 G 14 14 14 G G B . n C 1 1 LCC 1 1 1 LCC LCC C . n C 1 2 LCC 2 2 2 LCC LCC C . n C 1 3 LCC 3 3 3 LCC LCC C . n C 1 4 G 4 4 4 G G C . n C 1 5 A 5 5 5 A A C . n C 1 6 C 6 6 6 C C C . n C 1 7 U 7 7 7 U U C . n C 1 8 U 8 8 8 U U C . n C 1 9 A 9 9 9 A A C . n C 1 10 A 10 10 10 A A C . n C 1 11 G 11 11 11 G G C . n C 1 12 U 12 12 12 U U C . n C 1 13 C 13 13 13 C C C . n C 1 14 G 14 14 14 G G C . n D 1 1 LCC 1 1 1 LCC LCC D . n D 1 2 LCC 2 2 2 LCC LCC D . n D 1 3 LCC 3 3 3 LCC LCC D . n D 1 4 G 4 4 4 G G D . n D 1 5 A 5 5 5 A A D . n D 1 6 C 6 6 6 C C D . n D 1 7 U 7 7 7 U U D . n D 1 8 U 8 8 8 U U D . n D 1 9 A 9 9 9 A A D . n D 1 10 A 10 10 10 A A D . n D 1 11 G 11 11 11 G G D . n D 1 12 U 12 12 12 U U D . n D 1 13 C 13 13 13 C C D . n D 1 14 G 14 14 14 G G D . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code E 2 86P 1 101 2 86P GP4 A . F 2 86P 1 101 1 86P GP4 B . G 2 86P 1 101 4 86P GP4 C . H 2 86P 1 101 3 86P GP4 D . # loop_ _pdbx_struct_assembly.id _pdbx_struct_assembly.details _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count 1 author_and_software_defined_assembly PISA dimeric 2 2 author_and_software_defined_assembly PISA dimeric 2 # loop_ _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression _pdbx_struct_assembly_gen.asym_id_list 1 1 A,B,E,F 2 1 C,D,G,H # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 1510 ? 1 MORE -1 ? 1 'SSA (A^2)' 6180 ? 2 'ABSA (A^2)' 1520 ? 2 MORE -1 ? 2 'SSA (A^2)' 6160 ? # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2017-07-05 2 'Structure model' 1 1 2017-07-19 3 'Structure model' 1 2 2017-08-02 4 'Structure model' 1 3 2023-10-04 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Database references' 2 3 'Structure model' 'Database references' 3 4 'Structure model' 'Data collection' 4 4 'Structure model' 'Database references' 5 4 'Structure model' 'Refinement description' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 2 'Structure model' citation 2 2 'Structure model' citation_author 3 3 'Structure model' citation 4 4 'Structure model' chem_comp_atom 5 4 'Structure model' chem_comp_bond 6 4 'Structure model' database_2 7 4 'Structure model' pdbx_initial_refinement_model # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 2 'Structure model' '_citation.journal_abbrev' 2 2 'Structure model' '_citation.pdbx_database_id_PubMed' 3 2 'Structure model' '_citation.title' 4 2 'Structure model' '_citation_author.name' 5 3 'Structure model' '_citation.journal_volume' 6 3 'Structure model' '_citation.page_first' 7 3 'Structure model' '_citation.page_last' 8 4 'Structure model' '_database_2.pdbx_DOI' 9 4 'Structure model' '_database_2.pdbx_database_accession' # loop_ _software.citation_id _software.classification _software.compiler_name _software.compiler_version _software.contact_author _software.contact_author_email _software.date _software.description _software.dependencies _software.hardware _software.language _software.location _software.mods _software.name _software.os _software.os_version _software.type _software.version _software.pdbx_ordinal ? refinement ? ? ? ? ? ? ? ? ? ? ? REFMAC ? ? ? 5.8.0135 1 ? 'data reduction' ? ? ? ? ? ? ? ? ? ? ? HKL-2000 ? ? ? . 2 ? 'data scaling' ? ? ? ? ? ? ? ? ? ? ? HKL-2000 ? ? ? . 3 ? phasing ? ? ? ? ? ? ? ? ? ? ? PHASER ? ? ? . 4 # loop_ _pdbx_validate_rmsd_bond.id _pdbx_validate_rmsd_bond.PDB_model_num _pdbx_validate_rmsd_bond.auth_atom_id_1 _pdbx_validate_rmsd_bond.auth_asym_id_1 _pdbx_validate_rmsd_bond.auth_comp_id_1 _pdbx_validate_rmsd_bond.auth_seq_id_1 _pdbx_validate_rmsd_bond.PDB_ins_code_1 _pdbx_validate_rmsd_bond.label_alt_id_1 _pdbx_validate_rmsd_bond.auth_atom_id_2 _pdbx_validate_rmsd_bond.auth_asym_id_2 _pdbx_validate_rmsd_bond.auth_comp_id_2 _pdbx_validate_rmsd_bond.auth_seq_id_2 _pdbx_validate_rmsd_bond.PDB_ins_code_2 _pdbx_validate_rmsd_bond.label_alt_id_2 _pdbx_validate_rmsd_bond.bond_value _pdbx_validate_rmsd_bond.bond_target_value _pdbx_validate_rmsd_bond.bond_deviation _pdbx_validate_rmsd_bond.bond_standard_deviation _pdbx_validate_rmsd_bond.linker_flag 1 1 "O3'" A LCC 1 ? ? P A LCC 2 ? ? 1.694 1.607 0.087 0.012 Y 2 1 "O3'" A LCC 3 ? ? P A G 4 ? ? 1.703 1.607 0.096 0.012 Y 3 1 "O3'" B LCC 2 ? ? P B LCC 3 ? ? 1.701 1.607 0.094 0.012 Y 4 1 "O3'" B LCC 3 ? ? P B G 4 ? ? 1.707 1.607 0.100 0.012 Y 5 1 P B G 4 ? ? OP2 B G 4 ? ? 1.647 1.485 0.162 0.017 N 6 1 "O3'" C LCC 1 ? ? P C LCC 2 ? ? 1.703 1.607 0.096 0.012 Y 7 1 "O3'" C LCC 2 ? ? P C LCC 3 ? ? 1.690 1.607 0.083 0.012 Y 8 1 "O3'" D LCC 1 ? ? P D LCC 2 ? ? 1.696 1.607 0.089 0.012 Y 9 1 P D G 4 ? ? OP2 D G 4 ? ? 1.657 1.485 0.172 0.017 N # loop_ _pdbx_validate_rmsd_angle.id _pdbx_validate_rmsd_angle.PDB_model_num _pdbx_validate_rmsd_angle.auth_atom_id_1 _pdbx_validate_rmsd_angle.auth_asym_id_1 _pdbx_validate_rmsd_angle.auth_comp_id_1 _pdbx_validate_rmsd_angle.auth_seq_id_1 _pdbx_validate_rmsd_angle.PDB_ins_code_1 _pdbx_validate_rmsd_angle.label_alt_id_1 _pdbx_validate_rmsd_angle.auth_atom_id_2 _pdbx_validate_rmsd_angle.auth_asym_id_2 _pdbx_validate_rmsd_angle.auth_comp_id_2 _pdbx_validate_rmsd_angle.auth_seq_id_2 _pdbx_validate_rmsd_angle.PDB_ins_code_2 _pdbx_validate_rmsd_angle.label_alt_id_2 _pdbx_validate_rmsd_angle.auth_atom_id_3 _pdbx_validate_rmsd_angle.auth_asym_id_3 _pdbx_validate_rmsd_angle.auth_comp_id_3 _pdbx_validate_rmsd_angle.auth_seq_id_3 _pdbx_validate_rmsd_angle.PDB_ins_code_3 _pdbx_validate_rmsd_angle.label_alt_id_3 _pdbx_validate_rmsd_angle.angle_value _pdbx_validate_rmsd_angle.angle_target_value _pdbx_validate_rmsd_angle.angle_deviation _pdbx_validate_rmsd_angle.angle_standard_deviation _pdbx_validate_rmsd_angle.linker_flag 1 1 "C3'" A LCC 1 ? ? "O3'" A LCC 1 ? ? P A LCC 2 ? ? 128.16 119.70 8.46 1.20 Y 2 1 "O3'" A LCC 1 ? ? P A LCC 2 ? ? "O5'" A LCC 2 ? ? 89.04 104.00 -14.96 1.90 Y 3 1 "O3'" A LCC 3 ? ? P A G 4 ? ? OP1 A G 4 ? ? 84.94 105.20 -20.26 2.20 Y 4 1 "O5'" A U 8 ? ? P A U 8 ? ? OP2 A U 8 ? ? 99.63 105.70 -6.07 0.90 N 5 1 "C3'" B LCC 1 ? ? "O3'" B LCC 1 ? ? P B LCC 2 ? ? 131.33 119.70 11.63 1.20 Y 6 1 "O3'" B LCC 1 ? ? P B LCC 2 ? ? "O5'" B LCC 2 ? ? 76.09 104.00 -27.91 1.90 Y 7 1 "O3'" B LCC 2 ? ? P B LCC 3 ? ? "O5'" B LCC 3 ? ? 86.90 104.00 -17.10 1.90 Y 8 1 "C3'" B LCC 3 ? ? "O3'" B LCC 3 ? ? P B G 4 ? ? 105.76 119.70 -13.94 1.20 Y 9 1 "O3'" B LCC 3 ? ? P B G 4 ? ? OP2 B G 4 ? ? 124.04 110.50 13.54 1.10 Y 10 1 "O3'" B LCC 3 ? ? P B G 4 ? ? OP1 B G 4 ? ? 85.30 105.20 -19.90 2.20 Y 11 1 "C3'" C LCC 1 ? ? "O3'" C LCC 1 ? ? P C LCC 2 ? ? 138.00 119.70 18.30 1.20 Y 12 1 "O3'" C LCC 1 ? ? P C LCC 2 ? ? "O5'" C LCC 2 ? ? 127.81 104.00 23.81 1.90 Y 13 1 "C3'" C LCC 2 ? ? "O3'" C LCC 2 ? ? P C LCC 3 ? ? 111.52 119.70 -8.18 1.20 Y 14 1 "O3'" C LCC 2 ? ? P C LCC 3 ? ? "O5'" C LCC 3 ? ? 82.20 104.00 -21.80 1.90 Y 15 1 "C3'" C LCC 3 ? ? "O3'" C LCC 3 ? ? P C G 4 ? ? 111.87 119.70 -7.83 1.20 Y 16 1 "O3'" C LCC 3 ? ? P C G 4 ? ? OP1 C G 4 ? ? 83.95 105.20 -21.25 2.20 Y 17 1 "C3'" D LCC 3 ? ? "O3'" D LCC 3 ? ? P D G 4 ? ? 111.36 119.70 -8.34 1.20 Y 18 1 "O3'" D LCC 3 ? ? P D G 4 ? ? OP2 D G 4 ? ? 119.98 110.50 9.48 1.10 Y 19 1 "O3'" D LCC 3 ? ? P D G 4 ? ? OP1 D G 4 ? ? 83.47 105.20 -21.73 2.20 Y 20 1 P D G 4 ? ? "O5'" D G 4 ? ? "C5'" D G 4 ? ? 110.83 120.90 -10.07 1.60 N # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal 86P C2A C N N 1 86P C4A C Y N 2 86P C5A C Y N 3 86P C6A C N N 4 86P N2A N N N 5 86P O3A O N N 6 86P O6A O N N 7 86P O1A O N N 8 86P PA P N N 9 86P PB P N N 10 86P PC P N N 11 86P PG P N N 12 86P C1D C N R 13 86P C1E C N R 14 86P N1A N N N 15 86P N1B N N N 16 86P O1B O N N 17 86P O1C O N N 18 86P O1G O N N 19 86P C2B C N N 20 86P C2D C N R 21 86P C2E C N R 22 86P N2B N N N 23 86P O2A O N N 24 86P O2B O N N 25 86P O2C O N N 26 86P O2D O N N 27 86P O2E O N N 28 86P O2G O N N 29 86P C3D C N S 30 86P C3E C N S 31 86P N3A N N N 32 86P N3B N N N 33 86P O3B O N N 34 86P O3C O N N 35 86P O3D O N N 36 86P O3E O N N 37 86P C4B C Y N 38 86P C4D C N R 39 86P C4E C N R 40 86P O4D O N N 41 86P O4E O N N 42 86P C5B C Y N 43 86P C5D C N N 44 86P C5E C N N 45 86P O5D O N N 46 86P O5E O N N 47 86P C6B C N N 48 86P O6B O N N 49 86P N7A N Y N 50 86P N7B N Y N 51 86P C8A C Y N 52 86P C8B C Y N 53 86P N9A N Y N 54 86P N9B N Y N 55 86P H1 H N N 56 86P H2 H N N 57 86P H3 H N N 58 86P H4 H N N 59 86P H5 H N N 60 86P H6 H N N 61 86P H7 H N N 62 86P H8 H N N 63 86P H9 H N N 64 86P H10 H N N 65 86P H11 H N N 66 86P H12 H N N 67 86P H13 H N N 68 86P H14 H N N 69 86P H15 H N N 70 86P H16 H N N 71 86P H17 H N N 72 86P H18 H N N 73 86P H19 H N N 74 86P H20 H N N 75 86P H21 H N N 76 86P H22 H N N 77 86P H23 H N N 78 86P H24 H N N 79 86P H25 H N N 80 86P H26 H N N 81 86P H27 H N N 82 86P H28 H N N 83 A OP3 O N N 84 A P P N N 85 A OP1 O N N 86 A OP2 O N N 87 A "O5'" O N N 88 A "C5'" C N N 89 A "C4'" C N R 90 A "O4'" O N N 91 A "C3'" C N S 92 A "O3'" O N N 93 A "C2'" C N R 94 A "O2'" O N N 95 A "C1'" C N R 96 A N9 N Y N 97 A C8 C Y N 98 A N7 N Y N 99 A C5 C Y N 100 A C6 C Y N 101 A N6 N N N 102 A N1 N Y N 103 A C2 C Y N 104 A N3 N Y N 105 A C4 C Y N 106 A HOP3 H N N 107 A HOP2 H N N 108 A "H5'" H N N 109 A "H5''" H N N 110 A "H4'" H N N 111 A "H3'" H N N 112 A "HO3'" H N N 113 A "H2'" H N N 114 A "HO2'" H N N 115 A "H1'" H N N 116 A H8 H N N 117 A H61 H N N 118 A H62 H N N 119 A H2 H N N 120 C OP3 O N N 121 C P P N N 122 C OP1 O N N 123 C OP2 O N N 124 C "O5'" O N N 125 C "C5'" C N N 126 C "C4'" C N R 127 C "O4'" O N N 128 C "C3'" C N S 129 C "O3'" O N N 130 C "C2'" C N R 131 C "O2'" O N N 132 C "C1'" C N R 133 C N1 N N N 134 C C2 C N N 135 C O2 O N N 136 C N3 N N N 137 C C4 C N N 138 C N4 N N N 139 C C5 C N N 140 C C6 C N N 141 C HOP3 H N N 142 C HOP2 H N N 143 C "H5'" H N N 144 C "H5''" H N N 145 C "H4'" H N N 146 C "H3'" H N N 147 C "HO3'" H N N 148 C "H2'" H N N 149 C "HO2'" H N N 150 C "H1'" H N N 151 C H41 H N N 152 C H42 H N N 153 C H5 H N N 154 C H6 H N N 155 G OP3 O N N 156 G P P N N 157 G OP1 O N N 158 G OP2 O N N 159 G "O5'" O N N 160 G "C5'" C N N 161 G "C4'" C N R 162 G "O4'" O N N 163 G "C3'" C N S 164 G "O3'" O N N 165 G "C2'" C N R 166 G "O2'" O N N 167 G "C1'" C N R 168 G N9 N Y N 169 G C8 C Y N 170 G N7 N Y N 171 G C5 C Y N 172 G C6 C N N 173 G O6 O N N 174 G N1 N N N 175 G C2 C N N 176 G N2 N N N 177 G N3 N N N 178 G C4 C Y N 179 G HOP3 H N N 180 G HOP2 H N N 181 G "H5'" H N N 182 G "H5''" H N N 183 G "H4'" H N N 184 G "H3'" H N N 185 G "HO3'" H N N 186 G "H2'" H N N 187 G "HO2'" H N N 188 G "H1'" H N N 189 G H8 H N N 190 G H1 H N N 191 G H21 H N N 192 G H22 H N N 193 LCC "O5'" O N N 194 LCC "C5'" C N N 195 LCC "C4'" C N R 196 LCC "O4'" O N N 197 LCC "C1'" C N R 198 LCC N1 N N N 199 LCC C6 C N N 200 LCC C5 C N N 201 LCC C5M C N N 202 LCC C4 C N N 203 LCC N4 N N N 204 LCC N3 N N N 205 LCC C2 C N N 206 LCC O2 O N N 207 LCC "C3'" C N S 208 LCC "C2'" C N R 209 LCC "O2'" O N N 210 LCC "O3'" O N N 211 LCC "C6'" C N N 212 LCC P P N N 213 LCC O1P O N N 214 LCC O2P O N N 215 LCC OXT O N N 216 LCC "H5'1" H N N 217 LCC "H5'2" H N N 218 LCC "H1'" H N N 219 LCC H6 H N N 220 LCC H5M1 H N N 221 LCC H5M2 H N N 222 LCC H5M3 H N N 223 LCC H41 H N N 224 LCC H42 H N N 225 LCC "H3'" H N N 226 LCC "H2'1" H N N 227 LCC H3T H N N 228 LCC "H6'1" H N N 229 LCC "H6'2" H N N 230 LCC H1P H N N 231 LCC HXT H N N 232 U OP3 O N N 233 U P P N N 234 U OP1 O N N 235 U OP2 O N N 236 U "O5'" O N N 237 U "C5'" C N N 238 U "C4'" C N R 239 U "O4'" O N N 240 U "C3'" C N S 241 U "O3'" O N N 242 U "C2'" C N R 243 U "O2'" O N N 244 U "C1'" C N R 245 U N1 N N N 246 U C2 C N N 247 U O2 O N N 248 U N3 N N N 249 U C4 C N N 250 U O4 O N N 251 U C5 C N N 252 U C6 C N N 253 U HOP3 H N N 254 U HOP2 H N N 255 U "H5'" H N N 256 U "H5''" H N N 257 U "H4'" H N N 258 U "H3'" H N N 259 U "HO3'" H N N 260 U "H2'" H N N 261 U "HO2'" H N N 262 U "H1'" H N N 263 U H3 H N N 264 U H5 H N N 265 U H6 H N N 266 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal 86P O2G PG doub N N 1 86P O3C PG sing N N 2 86P O3C PC sing N N 3 86P PG O1G sing N N 4 86P PG O5E sing N N 5 86P O1C PC doub N N 6 86P O2B PB doub N N 7 86P O3B PC sing N N 8 86P O3B PB sing N N 9 86P PC O2C sing N N 10 86P O3E C3E sing N N 11 86P PB O1B sing N N 12 86P PB O3A sing N N 13 86P O5E C5E sing N N 14 86P C3E C4E sing N N 15 86P C3E C2E sing N N 16 86P C5E C4E sing N N 17 86P O2A PA doub N N 18 86P C4E O4E sing N N 19 86P C2E O2E sing N N 20 86P C2E C1E sing N N 21 86P O3A PA sing N N 22 86P PA O5D sing N N 23 86P PA O1A sing N N 24 86P C8B N7B doub Y N 25 86P C8B N9B sing Y N 26 86P C5D O5D sing N N 27 86P C5D C4D sing N N 28 86P O4E C1E sing N N 29 86P N7B C5B sing Y N 30 86P C1E N9B sing N N 31 86P N9B C4B sing Y N 32 86P O3D C3D sing N N 33 86P C5B C4B doub Y N 34 86P C5B C6B sing N N 35 86P C4B N3B sing N N 36 86P C3D C4D sing N N 37 86P C3D C2D sing N N 38 86P O6B C6B doub N N 39 86P C6B N1B sing N N 40 86P N3B C2B doub N N 41 86P C4D O4D sing N N 42 86P N1B C2B sing N N 43 86P C2B N2B sing N N 44 86P C2D O2D sing N N 45 86P C2D C1D sing N N 46 86P O4D C1D sing N N 47 86P C8A N9A sing Y N 48 86P C8A N7A doub Y N 49 86P C1D N9A sing N N 50 86P N9A C4A sing Y N 51 86P N7A C5A sing Y N 52 86P C4A C5A doub Y N 53 86P C4A N3A sing N N 54 86P C5A C6A sing N N 55 86P N3A C2A doub N N 56 86P C6A O6A doub N N 57 86P C6A N1A sing N N 58 86P C2A N1A sing N N 59 86P C2A N2A sing N N 60 86P N2A H1 sing N N 61 86P N2A H2 sing N N 62 86P O1A H3 sing N N 63 86P C1D H4 sing N N 64 86P C1E H5 sing N N 65 86P N1A H6 sing N N 66 86P N1B H7 sing N N 67 86P O1B H8 sing N N 68 86P O1G H9 sing N N 69 86P C2D H10 sing N N 70 86P C2E H11 sing N N 71 86P N2B H12 sing N N 72 86P N2B H13 sing N N 73 86P O2C H14 sing N N 74 86P O2D H15 sing N N 75 86P O2E H16 sing N N 76 86P C3D H17 sing N N 77 86P C3E H18 sing N N 78 86P O3D H19 sing N N 79 86P O3E H20 sing N N 80 86P C4D H21 sing N N 81 86P C4E H22 sing N N 82 86P C5D H23 sing N N 83 86P C5D H24 sing N N 84 86P C5E H25 sing N N 85 86P C5E H26 sing N N 86 86P C8A H27 sing N N 87 86P C8B H28 sing N N 88 A OP3 P sing N N 89 A OP3 HOP3 sing N N 90 A P OP1 doub N N 91 A P OP2 sing N N 92 A P "O5'" sing N N 93 A OP2 HOP2 sing N N 94 A "O5'" "C5'" sing N N 95 A "C5'" "C4'" sing N N 96 A "C5'" "H5'" sing N N 97 A "C5'" "H5''" sing N N 98 A "C4'" "O4'" sing N N 99 A "C4'" "C3'" sing N N 100 A "C4'" "H4'" sing N N 101 A "O4'" "C1'" sing N N 102 A "C3'" "O3'" sing N N 103 A "C3'" "C2'" sing N N 104 A "C3'" "H3'" sing N N 105 A "O3'" "HO3'" sing N N 106 A "C2'" "O2'" sing N N 107 A "C2'" "C1'" sing N N 108 A "C2'" "H2'" sing N N 109 A "O2'" "HO2'" sing N N 110 A "C1'" N9 sing N N 111 A "C1'" "H1'" sing N N 112 A N9 C8 sing Y N 113 A N9 C4 sing Y N 114 A C8 N7 doub Y N 115 A C8 H8 sing N N 116 A N7 C5 sing Y N 117 A C5 C6 sing Y N 118 A C5 C4 doub Y N 119 A C6 N6 sing N N 120 A C6 N1 doub Y N 121 A N6 H61 sing N N 122 A N6 H62 sing N N 123 A N1 C2 sing Y N 124 A C2 N3 doub Y N 125 A C2 H2 sing N N 126 A N3 C4 sing Y N 127 C OP3 P sing N N 128 C OP3 HOP3 sing N N 129 C P OP1 doub N N 130 C P OP2 sing N N 131 C P "O5'" sing N N 132 C OP2 HOP2 sing N N 133 C "O5'" "C5'" sing N N 134 C "C5'" "C4'" sing N N 135 C "C5'" "H5'" sing N N 136 C "C5'" "H5''" sing N N 137 C "C4'" "O4'" sing N N 138 C "C4'" "C3'" sing N N 139 C "C4'" "H4'" sing N N 140 C "O4'" "C1'" sing N N 141 C "C3'" "O3'" sing N N 142 C "C3'" "C2'" sing N N 143 C "C3'" "H3'" sing N N 144 C "O3'" "HO3'" sing N N 145 C "C2'" "O2'" sing N N 146 C "C2'" "C1'" sing N N 147 C "C2'" "H2'" sing N N 148 C "O2'" "HO2'" sing N N 149 C "C1'" N1 sing N N 150 C "C1'" "H1'" sing N N 151 C N1 C2 sing N N 152 C N1 C6 sing N N 153 C C2 O2 doub N N 154 C C2 N3 sing N N 155 C N3 C4 doub N N 156 C C4 N4 sing N N 157 C C4 C5 sing N N 158 C N4 H41 sing N N 159 C N4 H42 sing N N 160 C C5 C6 doub N N 161 C C5 H5 sing N N 162 C C6 H6 sing N N 163 G OP3 P sing N N 164 G OP3 HOP3 sing N N 165 G P OP1 doub N N 166 G P OP2 sing N N 167 G P "O5'" sing N N 168 G OP2 HOP2 sing N N 169 G "O5'" "C5'" sing N N 170 G "C5'" "C4'" sing N N 171 G "C5'" "H5'" sing N N 172 G "C5'" "H5''" sing N N 173 G "C4'" "O4'" sing N N 174 G "C4'" "C3'" sing N N 175 G "C4'" "H4'" sing N N 176 G "O4'" "C1'" sing N N 177 G "C3'" "O3'" sing N N 178 G "C3'" "C2'" sing N N 179 G "C3'" "H3'" sing N N 180 G "O3'" "HO3'" sing N N 181 G "C2'" "O2'" sing N N 182 G "C2'" "C1'" sing N N 183 G "C2'" "H2'" sing N N 184 G "O2'" "HO2'" sing N N 185 G "C1'" N9 sing N N 186 G "C1'" "H1'" sing N N 187 G N9 C8 sing Y N 188 G N9 C4 sing Y N 189 G C8 N7 doub Y N 190 G C8 H8 sing N N 191 G N7 C5 sing Y N 192 G C5 C6 sing N N 193 G C5 C4 doub Y N 194 G C6 O6 doub N N 195 G C6 N1 sing N N 196 G N1 C2 sing N N 197 G N1 H1 sing N N 198 G C2 N2 sing N N 199 G C2 N3 doub N N 200 G N2 H21 sing N N 201 G N2 H22 sing N N 202 G N3 C4 sing N N 203 LCC "O5'" "C5'" sing N N 204 LCC "O5'" P sing N N 205 LCC "C5'" "C4'" sing N N 206 LCC "C5'" "H5'1" sing N N 207 LCC "C5'" "H5'2" sing N N 208 LCC "C4'" "O4'" sing N N 209 LCC "C4'" "C3'" sing N N 210 LCC "C4'" "C6'" sing N N 211 LCC "O4'" "C1'" sing N N 212 LCC "C1'" N1 sing N N 213 LCC "C1'" "C2'" sing N N 214 LCC "C1'" "H1'" sing N N 215 LCC N1 C6 sing N N 216 LCC N1 C2 sing N N 217 LCC C6 C5 doub N N 218 LCC C6 H6 sing N N 219 LCC C5 C5M sing N N 220 LCC C5 C4 sing N N 221 LCC C5M H5M1 sing N N 222 LCC C5M H5M2 sing N N 223 LCC C5M H5M3 sing N N 224 LCC C4 N4 sing N N 225 LCC C4 N3 doub N N 226 LCC N4 H41 sing N N 227 LCC N4 H42 sing N N 228 LCC N3 C2 sing N N 229 LCC C2 O2 doub N N 230 LCC "C3'" "C2'" sing N N 231 LCC "C3'" "O3'" sing N N 232 LCC "C3'" "H3'" sing N N 233 LCC "C2'" "O2'" sing N N 234 LCC "C2'" "H2'1" sing N N 235 LCC "O2'" "C6'" sing N N 236 LCC "O3'" H3T sing N N 237 LCC "C6'" "H6'1" sing N N 238 LCC "C6'" "H6'2" sing N N 239 LCC P O1P sing N N 240 LCC P O2P doub N N 241 LCC P OXT sing N N 242 LCC O1P H1P sing N N 243 LCC OXT HXT sing N N 244 U OP3 P sing N N 245 U OP3 HOP3 sing N N 246 U P OP1 doub N N 247 U P OP2 sing N N 248 U P "O5'" sing N N 249 U OP2 HOP2 sing N N 250 U "O5'" "C5'" sing N N 251 U "C5'" "C4'" sing N N 252 U "C5'" "H5'" sing N N 253 U "C5'" "H5''" sing N N 254 U "C4'" "O4'" sing N N 255 U "C4'" "C3'" sing N N 256 U "C4'" "H4'" sing N N 257 U "O4'" "C1'" sing N N 258 U "C3'" "O3'" sing N N 259 U "C3'" "C2'" sing N N 260 U "C3'" "H3'" sing N N 261 U "O3'" "HO3'" sing N N 262 U "C2'" "O2'" sing N N 263 U "C2'" "C1'" sing N N 264 U "C2'" "H2'" sing N N 265 U "O2'" "HO2'" sing N N 266 U "C1'" N1 sing N N 267 U "C1'" "H1'" sing N N 268 U N1 C2 sing N N 269 U N1 C6 sing N N 270 U C2 O2 doub N N 271 U C2 N3 sing N N 272 U N3 C4 sing N N 273 U N3 H3 sing N N 274 U C4 O4 doub N N 275 U C4 C5 sing N N 276 U C5 C6 doub N N 277 U C5 H5 sing N N 278 U C6 H6 sing N N 279 # _ndb_struct_conf_na.entry_id 5UEG _ndb_struct_conf_na.feature 'a-form double helix' # loop_ _ndb_struct_na_base_pair.model_number _ndb_struct_na_base_pair.i_label_asym_id _ndb_struct_na_base_pair.i_label_comp_id _ndb_struct_na_base_pair.i_label_seq_id _ndb_struct_na_base_pair.i_symmetry _ndb_struct_na_base_pair.j_label_asym_id _ndb_struct_na_base_pair.j_label_comp_id _ndb_struct_na_base_pair.j_label_seq_id _ndb_struct_na_base_pair.j_symmetry _ndb_struct_na_base_pair.shear _ndb_struct_na_base_pair.stretch _ndb_struct_na_base_pair.stagger _ndb_struct_na_base_pair.buckle _ndb_struct_na_base_pair.propeller _ndb_struct_na_base_pair.opening _ndb_struct_na_base_pair.pair_number _ndb_struct_na_base_pair.pair_name _ndb_struct_na_base_pair.i_auth_asym_id _ndb_struct_na_base_pair.i_auth_seq_id _ndb_struct_na_base_pair.i_PDB_ins_code _ndb_struct_na_base_pair.j_auth_asym_id _ndb_struct_na_base_pair.j_auth_seq_id _ndb_struct_na_base_pair.j_PDB_ins_code _ndb_struct_na_base_pair.hbond_type_28 _ndb_struct_na_base_pair.hbond_type_12 1 A G 4 1_555 B C 13 1_555 0.022 0.006 0.102 0.681 -8.074 1.104 1 A_G4:C13_B A 4 ? B 13 ? 19 1 1 A A 5 1_555 B U 12 1_555 -0.276 0.017 0.550 13.853 -5.564 -1.535 2 A_A5:U12_B A 5 ? B 12 ? 20 1 1 A C 6 1_555 B G 11 1_555 0.047 0.016 0.342 5.515 -12.091 1.800 3 A_C6:G11_B A 6 ? B 11 ? 19 1 1 A U 7 1_555 B A 10 1_555 -0.202 0.172 -0.128 -1.472 -14.742 6.321 4 A_U7:A10_B A 7 ? B 10 ? 20 1 1 A U 8 1_555 B A 9 1_555 0.124 -0.097 0.176 -4.033 -13.247 -1.953 5 A_U8:A9_B A 8 ? B 9 ? 20 1 1 A A 9 1_555 B U 8 1_555 -0.199 -0.125 0.879 5.861 -7.192 -1.230 6 A_A9:U8_B A 9 ? B 8 ? 20 1 1 A A 10 1_555 B U 7 1_555 0.572 0.109 0.288 3.071 -15.051 1.930 7 A_A10:U7_B A 10 ? B 7 ? 20 1 1 A G 11 1_555 B C 6 1_555 -0.187 0.014 0.320 -5.709 -14.937 6.502 8 A_G11:C6_B A 11 ? B 6 ? 19 1 1 A U 12 1_555 B A 5 1_555 0.182 0.019 0.767 -10.019 -9.267 -3.490 9 A_U12:A5_B A 12 ? B 5 ? 20 1 1 A C 13 1_555 B G 4 1_555 0.041 -0.100 0.419 -4.887 -8.148 0.096 10 A_C13:G4_B A 13 ? B 4 ? 19 1 1 C G 4 1_555 D C 13 1_555 0.104 0.029 0.394 4.246 -6.577 0.681 11 C_G4:C13_D C 4 ? D 13 ? 19 1 1 C A 5 1_555 D U 12 1_555 -0.213 -0.068 0.499 13.741 -3.755 -1.793 12 C_A5:U12_D C 5 ? D 12 ? 20 1 1 C C 6 1_555 D G 11 1_555 0.206 -0.131 0.154 6.204 -14.891 1.298 13 C_C6:G11_D C 6 ? D 11 ? 19 1 1 C U 7 1_555 D A 10 1_555 -0.545 0.059 0.140 -3.439 -9.753 -1.862 14 C_U7:A10_D C 7 ? D 10 ? 20 1 1 C U 8 1_555 D A 9 1_555 0.024 -0.376 0.764 -1.251 -3.492 -1.429 15 C_U8:A9_D C 8 ? D 9 ? 20 1 1 C A 9 1_555 D U 8 1_555 -0.224 -0.134 0.033 -3.082 -16.604 -3.351 16 C_A9:U8_D C 9 ? D 8 ? 20 1 1 C A 10 1_555 D U 7 1_555 0.309 0.193 0.335 6.672 -12.038 7.831 17 C_A10:U7_D C 10 ? D 7 ? 20 1 1 C G 11 1_555 D C 6 1_555 0.029 0.204 0.221 -5.926 -15.252 7.376 18 C_G11:C6_D C 11 ? D 6 ? 19 1 1 C U 12 1_555 D A 5 1_555 -0.025 0.057 0.775 -9.547 -10.435 -4.517 19 C_U12:A5_D C 12 ? D 5 ? 20 1 1 C C 13 1_555 D G 4 1_555 0.137 -0.175 0.443 -5.860 -7.207 -1.373 20 C_C13:G4_D C 13 ? D 4 ? 19 1 # loop_ _ndb_struct_na_base_pair_step.model_number _ndb_struct_na_base_pair_step.i_label_asym_id_1 _ndb_struct_na_base_pair_step.i_label_comp_id_1 _ndb_struct_na_base_pair_step.i_label_seq_id_1 _ndb_struct_na_base_pair_step.i_symmetry_1 _ndb_struct_na_base_pair_step.j_label_asym_id_1 _ndb_struct_na_base_pair_step.j_label_comp_id_1 _ndb_struct_na_base_pair_step.j_label_seq_id_1 _ndb_struct_na_base_pair_step.j_symmetry_1 _ndb_struct_na_base_pair_step.i_label_asym_id_2 _ndb_struct_na_base_pair_step.i_label_comp_id_2 _ndb_struct_na_base_pair_step.i_label_seq_id_2 _ndb_struct_na_base_pair_step.i_symmetry_2 _ndb_struct_na_base_pair_step.j_label_asym_id_2 _ndb_struct_na_base_pair_step.j_label_comp_id_2 _ndb_struct_na_base_pair_step.j_label_seq_id_2 _ndb_struct_na_base_pair_step.j_symmetry_2 _ndb_struct_na_base_pair_step.shift _ndb_struct_na_base_pair_step.slide _ndb_struct_na_base_pair_step.rise _ndb_struct_na_base_pair_step.tilt _ndb_struct_na_base_pair_step.roll _ndb_struct_na_base_pair_step.twist _ndb_struct_na_base_pair_step.x_displacement _ndb_struct_na_base_pair_step.y_displacement _ndb_struct_na_base_pair_step.helical_rise _ndb_struct_na_base_pair_step.inclination _ndb_struct_na_base_pair_step.tip _ndb_struct_na_base_pair_step.helical_twist _ndb_struct_na_base_pair_step.step_number _ndb_struct_na_base_pair_step.step_name _ndb_struct_na_base_pair_step.i_auth_asym_id_1 _ndb_struct_na_base_pair_step.i_auth_seq_id_1 _ndb_struct_na_base_pair_step.i_PDB_ins_code_1 _ndb_struct_na_base_pair_step.j_auth_asym_id_1 _ndb_struct_na_base_pair_step.j_auth_seq_id_1 _ndb_struct_na_base_pair_step.j_PDB_ins_code_1 _ndb_struct_na_base_pair_step.i_auth_asym_id_2 _ndb_struct_na_base_pair_step.i_auth_seq_id_2 _ndb_struct_na_base_pair_step.i_PDB_ins_code_2 _ndb_struct_na_base_pair_step.j_auth_asym_id_2 _ndb_struct_na_base_pair_step.j_auth_seq_id_2 _ndb_struct_na_base_pair_step.j_PDB_ins_code_2 1 A G 4 1_555 B C 13 1_555 A A 5 1_555 B U 12 1_555 -0.064 -1.805 2.929 -4.307 2.245 26.776 -4.331 -0.809 2.748 4.797 9.204 27.205 1 AA_G4A5:U12C13_BB A 4 ? B 13 ? A 5 ? B 12 ? 1 A A 5 1_555 B U 12 1_555 A C 6 1_555 B G 11 1_555 0.396 -1.599 3.333 1.127 7.990 37.636 -3.393 -0.465 2.955 12.214 -1.722 38.460 2 AA_A5C6:G11U12_BB A 5 ? B 12 ? A 6 ? B 11 ? 1 A C 6 1_555 B G 11 1_555 A U 7 1_555 B A 10 1_555 -0.416 -1.769 3.377 -0.912 5.879 26.226 -5.280 0.667 2.930 12.748 1.977 26.881 3 AA_C6U7:A10G11_BB A 6 ? B 11 ? A 7 ? B 10 ? 1 A U 7 1_555 B A 10 1_555 A U 8 1_555 B A 9 1_555 -0.490 -1.083 3.415 -3.007 7.767 33.762 -3.019 0.354 3.127 13.127 5.083 34.745 4 AA_U7U8:A9A10_BB A 7 ? B 10 ? A 8 ? B 9 ? 1 A U 8 1_555 B A 9 1_555 A A 9 1_555 B U 8 1_555 0.495 -1.785 2.830 -4.760 10.439 28.161 -5.002 -1.671 1.952 20.414 9.308 30.365 5 AA_U8A9:U8A9_BB A 8 ? B 9 ? A 9 ? B 8 ? 1 A A 9 1_555 B U 8 1_555 A A 10 1_555 B U 7 1_555 0.290 -1.511 3.395 7.770 8.393 37.090 -3.304 0.514 2.995 12.825 -11.873 38.754 6 AA_A9A10:U7U8_BB A 9 ? B 8 ? A 10 ? B 7 ? 1 A A 10 1_555 B U 7 1_555 A G 11 1_555 B C 6 1_555 0.695 -1.977 3.247 3.806 9.081 28.772 -5.445 -0.626 2.586 17.635 -7.391 30.377 7 AA_A10G11:C6U7_BB A 10 ? B 7 ? A 11 ? B 6 ? 1 A G 11 1_555 B C 6 1_555 A U 12 1_555 B A 5 1_555 -0.410 -1.501 3.446 -1.345 5.243 35.807 -3.170 0.466 3.214 8.468 2.173 36.201 8 AA_G11U12:A5C6_BB A 11 ? B 6 ? A 12 ? B 5 ? 1 A U 12 1_555 B A 5 1_555 A C 13 1_555 B G 4 1_555 0.081 -1.864 3.036 2.843 4.218 28.276 -4.601 0.406 2.730 8.546 -5.761 28.720 9 AA_U12C13:G4A5_BB A 12 ? B 5 ? A 13 ? B 4 ? 1 C G 4 1_555 D C 13 1_555 C A 5 1_555 D U 12 1_555 -0.082 -1.851 3.044 -1.615 2.080 25.823 -4.642 -0.223 2.888 4.639 3.602 25.955 10 CC_G4A5:U12C13_DD C 4 ? D 13 ? C 5 ? D 12 ? 1 C A 5 1_555 D U 12 1_555 C C 6 1_555 D G 11 1_555 0.323 -1.569 3.346 2.600 8.852 37.410 -3.450 -0.175 2.928 13.549 -3.980 38.492 11 CC_A5C6:G11U12_DD C 5 ? D 12 ? C 6 ? D 11 ? 1 C C 6 1_555 D G 11 1_555 C U 7 1_555 D A 10 1_555 -0.660 -1.929 3.419 -5.239 8.858 28.760 -5.392 0.234 2.790 17.155 10.145 30.509 12 CC_C6U7:A10G11_DD C 6 ? D 11 ? C 7 ? D 10 ? 1 C U 7 1_555 D A 10 1_555 C U 8 1_555 D A 9 1_555 -0.389 -1.481 3.229 -7.944 5.522 34.049 -3.226 -0.492 2.973 9.202 13.238 35.357 13 CC_U7U8:A9A10_DD C 7 ? D 10 ? C 8 ? D 9 ? 1 C U 8 1_555 D A 9 1_555 C A 9 1_555 D U 8 1_555 -0.140 -1.842 3.181 6.612 13.900 28.840 -5.329 1.224 2.025 25.724 -12.237 32.614 14 CC_U8A9:U8A9_DD C 8 ? D 9 ? C 9 ? D 8 ? 1 C A 9 1_555 D U 8 1_555 C A 10 1_555 D U 7 1_555 0.477 -1.190 3.060 -0.363 3.905 34.072 -2.579 -0.861 2.905 6.636 0.617 34.290 15 CC_A9A10:U7U8_DD C 9 ? D 8 ? C 10 ? D 7 ? 1 C A 10 1_555 D U 7 1_555 C G 11 1_555 D C 6 1_555 0.473 -1.866 3.370 4.479 8.925 29.891 -5.042 -0.068 2.753 16.727 -8.394 31.479 16 CC_A10G11:C6U7_DD C 10 ? D 7 ? C 11 ? D 6 ? 1 C G 11 1_555 D C 6 1_555 C U 12 1_555 D A 5 1_555 -0.457 -1.525 3.336 -2.505 5.689 33.423 -3.508 0.386 3.067 9.787 4.309 33.980 17 CC_G11U12:A5C6_DD C 11 ? D 6 ? C 12 ? D 5 ? 1 C U 12 1_555 D A 5 1_555 C C 13 1_555 D G 4 1_555 -0.029 -1.888 3.049 2.306 4.941 30.188 -4.432 0.458 2.703 9.390 -4.383 30.665 18 CC_U12C13:G4A5_DD C 12 ? D 5 ? C 13 ? D 4 ? # _pdbx_entity_nonpoly.entity_id 2 _pdbx_entity_nonpoly.name ;[[(2~{R},3~{S},4~{R},5~{R})-5-(2-azanyl-6-oxidanylidene-1~{H}-purin-9-yl)-3,4-bis(oxidanyl)oxolan-2-yl]methoxy-oxidanyl-phosphoryl] [[[(2~{R},3~{S},4~{R},5~{R})-5-(2-azanyl-6-oxidanylidene-1~{H}-purin-9-yl)-3,4-bis(oxidanyl)oxolan-2-yl]methoxy-oxidanyl-phosphoryl]oxy-oxidanyl-phosphoryl] hydrogen phosphate ; _pdbx_entity_nonpoly.comp_id 86P # _pdbx_initial_refinement_model.id 1 _pdbx_initial_refinement_model.entity_id_list ? _pdbx_initial_refinement_model.type 'experimental model' _pdbx_initial_refinement_model.source_name PDB _pdbx_initial_refinement_model.accession_code 5DHC _pdbx_initial_refinement_model.details ? #