HEADER RNA 02-JAN-17 5UEG TITLE RNA PRIMER-TEMPLATE COMPLEX WITH GUANOSINE DINUCLEOTIDE G(5')PPPP(5')G TITLE 2 LIGAND COMPND MOL_ID: 1; COMPND 2 MOLECULE: RNA (5'-R(*(LCC)P*(LCC)P*(LCC) COMPND 3 P*GP*AP*CP*UP*UP*AP*AP*GP*UP*CP*G)-3'); COMPND 4 CHAIN: A, B, C, D; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 SYNTHETIC: YES; SOURCE 3 ORGANISM_SCIENTIFIC: SYNTHETIC CONSTRUCT; SOURCE 4 ORGANISM_TAXID: 32630 KEYWDS RNA, DINUCLEOTIDE EXPDTA X-RAY DIFFRACTION AUTHOR W.ZHANG,C.P.TAM,J.W.SZOSTAK REVDAT 4 04-OCT-23 5UEG 1 REMARK REVDAT 3 02-AUG-17 5UEG 1 JRNL REVDAT 2 19-JUL-17 5UEG 1 JRNL REVDAT 1 05-JUL-17 5UEG 0 JRNL AUTH W.ZHANG,C.P.TAM,T.WALTON,A.C.FAHRENBACH,G.BIRRANE, JRNL AUTH 2 J.W.SZOSTAK JRNL TITL INSIGHT INTO THE MECHANISM OF NONENZYMATIC RNA PRIMER JRNL TITL 2 EXTENSION FROM THE STRUCTURE OF AN RNA-GPPPG COMPLEX. JRNL REF PROC. NATL. ACAD. SCI. V. 114 7659 2017 JRNL REF 2 U.S.A. JRNL REFN ESSN 1091-6490 JRNL PMID 28673998 JRNL DOI 10.1073/PNAS.1704006114 REMARK 2 REMARK 2 RESOLUTION. 2.60 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0135 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.60 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 50.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 96.3 REMARK 3 NUMBER OF REFLECTIONS : 6081 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.212 REMARK 3 R VALUE (WORKING SET) : 0.208 REMARK 3 FREE R VALUE : 0.301 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 325 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.60 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.67 REMARK 3 REFLECTION IN BIN (WORKING SET) : 387 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 75.19 REMARK 3 BIN R VALUE (WORKING SET) : 0.5080 REMARK 3 BIN FREE R VALUE SET COUNT : 16 REMARK 3 BIN FREE R VALUE : 0.5820 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 0 REMARK 3 NUCLEIC ACID ATOMS : 1192 REMARK 3 HETEROGEN ATOMS : 220 REMARK 3 SOLVENT ATOMS : 0 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 84.06 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.01000 REMARK 3 B22 (A**2) : -0.01000 REMARK 3 B33 (A**2) : 0.03000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): NULL REMARK 3 ESU BASED ON FREE R VALUE (A): 0.418 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.337 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 18.124 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.934 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.912 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 1804 ; 0.018 ; 0.017 REMARK 3 BOND LENGTHS OTHERS (A): 752 ; 0.020 ; 0.024 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 2812 ; 3.009 ; 2.037 REMARK 3 BOND ANGLES OTHERS (DEGREES): 1812 ; 3.684 ; 3.272 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): NULL ; NULL ; NULL REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 328 ; 0.220 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 888 ; 0.010 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 328 ; 0.002 ; 0.022 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1804 ; 6.837 ; 8.989 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 1805 ; 6.835 ; 8.988 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 2813 ; 9.504 ;13.459 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): 2423 ;11.524 ;89.295 REMARK 3 LONG RANGE B OTHER ATOMS (A**2): 2424 ;11.522 ;89.293 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 5UEG COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 09-JAN-17. REMARK 100 THE DEPOSITION ID IS D_1000225741. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 28-OCT-16 REMARK 200 TEMPERATURE (KELVIN) : 99 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ALS REMARK 200 BEAMLINE : 8.2.1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.995 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 6425 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.600 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 96.6 REMARK 200 DATA REDUNDANCY : 5.100 REMARK 200 R MERGE (I) : 0.10000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 15.1400 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.60 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.69 REMARK 200 COMPLETENESS FOR SHELL (%) : 74.8 REMARK 200 DATA REDUNDANCY IN SHELL : 3.60 REMARK 200 R MERGE FOR SHELL (I) : 0.55400 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.260 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 5DHC REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 60.08 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.08 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.05 M MAGNESIUM CHLORIDE, 1.2 M REMARK 280 LITHIUM SULFATE, 50 MM MES PH 6.5, 2 MM COBALT (II) CHLORIDE, REMARK 280 VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 3 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z REMARK 290 3555 -X+Y,-X,Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1510 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 6180 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -1.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1520 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 6160 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -1.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 LCC A 1 O3' LCC A 2 P 0.087 REMARK 500 LCC A 3 O3' G A 4 P 0.096 REMARK 500 LCC B 2 O3' LCC B 3 P 0.094 REMARK 500 LCC B 3 O3' G B 4 P 0.100 REMARK 500 G B 4 P G B 4 OP2 0.162 REMARK 500 LCC C 1 O3' LCC C 2 P 0.096 REMARK 500 LCC C 2 O3' LCC C 3 P 0.083 REMARK 500 LCC D 1 O3' LCC D 2 P 0.089 REMARK 500 G D 4 P G D 4 OP2 0.172 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 LCC A 1 C3' - O3' - P ANGL. DEV. = 8.5 DEGREES REMARK 500 LCC A 2 O3' - P - O5' ANGL. DEV. = -15.0 DEGREES REMARK 500 G A 4 O3' - P - OP1 ANGL. DEV. = -20.3 DEGREES REMARK 500 U A 8 O5' - P - OP2 ANGL. DEV. = -6.1 DEGREES REMARK 500 LCC B 1 C3' - O3' - P ANGL. DEV. = 11.6 DEGREES REMARK 500 LCC B 2 O3' - P - O5' ANGL. DEV. = -27.9 DEGREES REMARK 500 LCC B 3 O3' - P - O5' ANGL. DEV. = -17.1 DEGREES REMARK 500 LCC B 3 C3' - O3' - P ANGL. DEV. = -13.9 DEGREES REMARK 500 G B 4 O3' - P - OP2 ANGL. DEV. = 13.5 DEGREES REMARK 500 G B 4 O3' - P - OP1 ANGL. DEV. = -19.9 DEGREES REMARK 500 LCC C 1 C3' - O3' - P ANGL. DEV. = 18.3 DEGREES REMARK 500 LCC C 2 O3' - P - O5' ANGL. DEV. = 23.8 DEGREES REMARK 500 LCC C 2 C3' - O3' - P ANGL. DEV. = -8.2 DEGREES REMARK 500 LCC C 3 O3' - P - O5' ANGL. DEV. = -21.8 DEGREES REMARK 500 LCC C 3 C3' - O3' - P ANGL. DEV. = -7.8 DEGREES REMARK 500 G C 4 O3' - P - OP1 ANGL. DEV. = -21.2 DEGREES REMARK 500 LCC D 3 C3' - O3' - P ANGL. DEV. = -8.3 DEGREES REMARK 500 G D 4 O3' - P - OP2 ANGL. DEV. = 9.5 DEGREES REMARK 500 G D 4 O3' - P - OP1 ANGL. DEV. = -21.7 DEGREES REMARK 500 G D 4 P - O5' - C5' ANGL. DEV. = -10.1 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue 86P A 101 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue 86P B 101 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue 86P C 101 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue 86P D 101 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 5UED RELATED DB: PDB REMARK 900 RELATED ID: 5UEE RELATED DB: PDB REMARK 900 RELATED ID: 5UEF RELATED DB: PDB DBREF 5UEG A 1 14 PDB 5UEG 5UEG 1 14 DBREF 5UEG B 1 14 PDB 5UEG 5UEG 1 14 DBREF 5UEG C 1 14 PDB 5UEG 5UEG 1 14 DBREF 5UEG D 1 14 PDB 5UEG 5UEG 1 14 SEQRES 1 A 14 LCC LCC LCC G A C U U A A G U C SEQRES 2 A 14 G SEQRES 1 B 14 LCC LCC LCC G A C U U A A G U C SEQRES 2 B 14 G SEQRES 1 C 14 LCC LCC LCC G A C U U A A G U C SEQRES 2 C 14 G SEQRES 1 D 14 LCC LCC LCC G A C U U A A G U C SEQRES 2 D 14 G HET LCC A 1 19 HET LCC A 2 22 HET LCC A 3 22 HET LCC B 1 19 HET LCC B 2 22 HET LCC B 3 22 HET LCC C 1 19 HET LCC C 2 22 HET LCC C 3 22 HET LCC D 1 19 HET LCC D 2 22 HET LCC D 3 22 HET 86P A 101 110 HET 86P B 101 110 HET 86P C 101 110 HET 86P D 101 110 HETNAM LCC [(1R,3R,4R,7S)-7-HYDROXY-3-(5-METHYLCYTOSIN-1-YL)-2,5- HETNAM 2 LCC DIOXABICYCLO[2.2.1]HEPT-1-YL]METHYL DIHYDROGEN HETNAM 3 LCC PHOSPHATE HETNAM 86P [[(2~{R},3~{S},4~{R},5~{R})-5-(2-AZANYL-6- HETNAM 2 86P OXIDANYLIDENE-1~{H}-PURIN-9-YL)-3,4-BIS(OXIDANYL) HETNAM 3 86P OXOLAN-2-YL]METHOXY-OXIDANYL-PHOSPHORYL] [[[(2~{R}, HETNAM 4 86P 3~{S},4~{R},5~{R})-5-(2-AZANYL-6-OXIDANYLIDENE-1~{H}- HETNAM 5 86P PURIN-9-YL)-3,4-BIS(OXIDANYL)OXOLAN-2-YL]METHOXY- HETNAM 6 86P OXIDANYL-PHOSPHORYL]OXY-OXIDANYL-PHOSPHORYL] HYDROGEN HETNAM 7 86P PHOSPHATE FORMUL 1 LCC 12(C11 H16 N3 O8 P) FORMUL 5 86P 4(C20 H28 N10 O21 P4) LINK O3' LCC A 1 P LCC A 2 1555 1555 1.69 LINK O3' LCC A 2 P LCC A 3 1555 1555 1.56 LINK O3' LCC A 3 P G A 4 1555 1555 1.70 LINK O3' LCC B 1 P LCC B 2 1555 1555 1.66 LINK O3' LCC B 2 P LCC B 3 1555 1555 1.70 LINK O3' LCC B 3 P G B 4 1555 1555 1.71 LINK O3' LCC C 1 P LCC C 2 1555 1555 1.70 LINK O3' LCC C 2 P LCC C 3 1555 1555 1.69 LINK O3' LCC C 3 P G C 4 1555 1555 1.64 LINK O3' LCC D 1 P LCC D 2 1555 1555 1.70 LINK O3' LCC D 2 P LCC D 3 1555 1555 1.62 LINK O3' LCC D 3 P G D 4 1555 1555 1.57 SITE 1 AC1 5 LCC A 1 LCC A 2 LCC A 3 G B 14 SITE 2 AC1 5 LCC D 1 SITE 1 AC2 5 G A 14 LCC B 1 LCC B 2 LCC B 3 SITE 2 AC2 5 LCC C 1 SITE 1 AC3 5 LCC B 1 LCC C 1 LCC C 2 LCC C 3 SITE 2 AC3 5 G D 14 SITE 1 AC4 5 LCC A 1 G C 14 LCC D 1 LCC D 2 SITE 2 AC4 5 LCC D 3 CRYST1 48.416 48.416 81.965 90.00 90.00 120.00 P 3 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.020654 0.011925 0.000000 0.00000 SCALE2 0.000000 0.023850 0.000000 0.00000 SCALE3 0.000000 0.000000 0.012200 0.00000 HETATM 1 O5' LCC A 1 37.164 1.293 78.211 1.00102.75 O HETATM 2 C5' LCC A 1 38.206 0.480 78.785 1.00 89.70 C HETATM 3 C4' LCC A 1 37.437 -0.698 79.356 1.00 86.91 C HETATM 4 O4' LCC A 1 36.569 -0.405 80.443 1.00 93.80 O HETATM 5 C1' LCC A 1 35.698 -1.572 80.520 1.00 83.23 C HETATM 6 N1 LCC A 1 34.272 -1.156 80.588 1.00 82.35 N HETATM 7 C6 LCC A 1 33.904 0.198 80.455 1.00 80.06 C HETATM 8 C5 LCC A 1 32.561 0.552 80.585 1.00 90.06 C HETATM 9 C5M LCC A 1 32.151 1.900 80.437 1.00 92.10 C HETATM 10 C4 LCC A 1 31.638 -0.479 80.849 1.00 92.60 C HETATM 11 N4 LCC A 1 30.353 -0.139 80.954 1.00104.30 N HETATM 12 N3 LCC A 1 32.022 -1.762 80.975 1.00 79.16 N HETATM 13 C2 LCC A 1 33.324 -2.083 80.859 1.00 83.08 C HETATM 14 O2 LCC A 1 33.645 -3.259 80.986 1.00 79.37 O HETATM 15 C3' LCC A 1 36.475 -1.260 78.464 1.00 87.26 C HETATM 16 C2' LCC A 1 36.101 -2.370 79.315 1.00 84.26 C HETATM 17 O2' LCC A 1 37.424 -3.017 79.501 1.00 73.14 O HETATM 18 O3' LCC A 1 37.128 -1.696 77.378 1.00 92.47 O HETATM 19 C6' LCC A 1 38.386 -1.899 79.701 1.00 79.77 C HETATM 20 O5' LCC A 2 35.846 -3.178 76.081 1.00 69.95 O HETATM 21 C5' LCC A 2 36.629 -4.386 76.030 1.00 75.81 C HETATM 22 C4' LCC A 2 35.653 -5.481 76.389 1.00 76.24 C HETATM 23 O4' LCC A 2 34.894 -5.084 77.493 1.00 71.88 O HETATM 24 C1' LCC A 2 33.814 -6.024 77.526 1.00 72.02 C HETATM 25 N1 LCC A 2 32.572 -5.229 77.697 1.00 74.12 N HETATM 26 C6 LCC A 2 32.591 -3.819 77.586 1.00 72.65 C HETATM 27 C5 LCC A 2 31.428 -3.103 77.827 1.00 73.03 C HETATM 28 C5M LCC A 2 31.445 -1.703 77.686 1.00 78.47 C HETATM 29 C4 LCC A 2 30.293 -3.828 78.180 1.00 72.61 C HETATM 30 N4 LCC A 2 29.178 -3.166 78.375 1.00 79.50 N HETATM 31 N3 LCC A 2 30.291 -5.162 78.288 1.00 71.00 N HETATM 32 C2 LCC A 2 31.421 -5.850 78.060 1.00 78.92 C HETATM 33 O2 LCC A 2 31.362 -7.075 78.186 1.00 85.75 O HETATM 34 C3' LCC A 2 34.587 -5.704 75.447 1.00 74.86 C HETATM 35 C2' LCC A 2 33.985 -6.785 76.273 1.00 74.35 C HETATM 36 O2' LCC A 2 35.101 -7.757 76.432 1.00 75.34 O HETATM 37 O3' LCC A 2 35.059 -6.182 74.189 1.00 74.06 O HETATM 38 C6' LCC A 2 36.321 -6.911 76.612 1.00 77.37 C HETATM 39 P LCC A 2 36.586 -1.728 75.773 1.00 85.17 P HETATM 40 O1P LCC A 2 35.378 -0.725 75.662 1.00 68.16 O HETATM 41 O2P LCC A 2 37.128 -2.011 74.189 1.00 94.68 O HETATM 42 O5' LCC A 3 32.973 -6.961 73.570 1.00 82.09 O HETATM 43 C5' LCC A 3 33.287 -8.355 73.323 1.00 68.64 C HETATM 44 C4' LCC A 3 32.001 -9.118 73.664 1.00 67.11 C HETATM 45 O4' LCC A 3 31.293 -8.576 74.766 1.00 64.25 O HETATM 46 C1' LCC A 3 29.985 -9.078 74.695 1.00 58.90 C HETATM 47 N1 LCC A 3 29.232 -7.848 74.857 1.00 57.79 N HETATM 48 C6 LCC A 3 29.833 -6.585 74.751 1.00 58.40 C HETATM 49 C5 LCC A 3 29.052 -5.478 75.033 1.00 67.84 C HETATM 50 C5M LCC A 3 29.625 -4.229 74.880 1.00 72.77 C HETATM 51 C4 LCC A 3 27.716 -5.649 75.450 1.00 72.74 C HETATM 52 N4 LCC A 3 26.993 -4.564 75.719 1.00 71.82 N HETATM 53 N3 LCC A 3 27.183 -6.875 75.580 1.00 70.09 N HETATM 54 C2 LCC A 3 27.957 -7.945 75.296 1.00 66.37 C HETATM 55 O2 LCC A 3 27.432 -9.045 75.423 1.00 65.11 O HETATM 56 C3' LCC A 3 30.978 -9.046 72.684 1.00 69.70 C HETATM 57 C2' LCC A 3 29.981 -9.814 73.471 1.00 65.44 C HETATM 58 O2' LCC A 3 30.732 -11.054 73.762 1.00 65.93 O HETATM 59 O3' LCC A 3 31.175 -9.570 71.366 1.00 72.95 O HETATM 60 C6' LCC A 3 32.176 -10.653 73.876 1.00 66.52 C HETATM 61 P LCC A 3 34.137 -6.029 72.945 1.00 86.59 P HETATM 62 O1P LCC A 3 32.883 -5.092 72.788 1.00109.19 O HETATM 63 O2P LCC A 3 35.041 -6.566 71.816 1.00 78.03 O