HEADER IMMUNE SYSTEM 03-JAN-17 5UF1 TITLE CRYSTAL STRUCTURE OF VARIABLE LYMPHOCYTE RECEPTOR (VLR) O13 IN COMPLEX TITLE 2 WITH H-TRISACCHARIDE COMPND MOL_ID: 1; COMPND 2 MOLECULE: O13; COMPND 3 CHAIN: B, A; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: PETROMYZON MARINUS; SOURCE 3 ORGANISM_COMMON: SEA LAMPREY; SOURCE 4 ORGANISM_TAXID: 7757; SOURCE 5 EXPRESSION_SYSTEM: SPODOPTERA FRUGIPERDA; SOURCE 6 EXPRESSION_SYSTEM_COMMON: FALL ARMYWORM; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 7108 KEYWDS VARIABLE LYMPHOCYTE RECEPTORS, VLR, LEUCINE-RICH REPEAT, LRR, KEYWDS 2 ADAPTIVE IMMUNITY, IMMUNE SYSTEM, SEA LAMPREY, JAWLESS FISH, KEYWDS 3 RECEPTOR, GLYCAN BINDING, GLYCAN RECEPTOR EXPDTA X-RAY DIFFRACTION AUTHOR R.J.GUNN,B.C.COLLINS,T.R.MCKITRICK,R.D.CUMMINGS,M.D.COOPER, AUTHOR 2 B.R.HERRIN,I.A.WILSON REVDAT 7 06-NOV-24 5UF1 1 REMARK REVDAT 6 04-OCT-23 5UF1 1 HETSYN REVDAT 5 29-JUL-20 5UF1 1 COMPND REMARK HETNAM LINK REVDAT 5 2 1 SITE ATOM REVDAT 4 11-DEC-19 5UF1 1 REMARK REVDAT 3 20-FEB-19 5UF1 1 AUTHOR REVDAT 2 22-NOV-17 5UF1 1 JRNL REVDAT 1 18-OCT-17 5UF1 0 JRNL AUTH B.C.COLLINS,R.J.GUNN,T.R.MCKITRICK,R.D.CUMMINGS,M.D.COOPER, JRNL AUTH 2 B.R.HERRIN,I.A.WILSON JRNL TITL STRUCTURAL INSIGHTS INTO VLR FINE SPECIFICITY FOR BLOOD JRNL TITL 2 GROUP CARBOHYDRATES. JRNL REF STRUCTURE V. 25 1667 2017 JRNL REFN ISSN 1878-4186 JRNL PMID 28988747 JRNL DOI 10.1016/J.STR.2017.09.003 REMARK 2 REMARK 2 RESOLUTION. 2.03 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.10_2155 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.03 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 47.90 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 85.4 REMARK 3 NUMBER OF REFLECTIONS : 32335 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.188 REMARK 3 R VALUE (WORKING SET) : 0.187 REMARK 3 FREE R VALUE : 0.211 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.610 REMARK 3 FREE R VALUE TEST SET COUNT : 1813 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 47.9154 - 4.7717 1.00 2854 265 0.1600 0.1705 REMARK 3 2 4.7717 - 3.7880 1.00 2785 167 0.1383 0.1448 REMARK 3 3 3.7880 - 3.3093 1.00 2822 132 0.1674 0.2058 REMARK 3 4 3.3093 - 3.0067 1.00 2743 161 0.2013 0.2426 REMARK 3 5 3.0067 - 2.7913 1.00 2734 181 0.2062 0.2762 REMARK 3 6 2.7913 - 2.6267 1.00 2770 122 0.2175 0.2313 REMARK 3 7 2.6267 - 2.4952 0.99 2751 130 0.2085 0.2294 REMARK 3 8 2.4952 - 2.3866 0.94 2558 139 0.2091 0.2483 REMARK 3 9 2.3866 - 2.2947 0.85 2299 135 0.2167 0.2464 REMARK 3 10 2.2947 - 2.2155 0.76 2063 127 0.2177 0.2888 REMARK 3 11 2.2155 - 2.1462 0.65 1739 108 0.2366 0.2576 REMARK 3 12 2.1462 - 2.0849 0.51 1385 81 0.2463 0.2834 REMARK 3 13 2.0849 - 2.0300 0.38 1019 65 0.2666 0.2993 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.210 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 22.880 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 21.13 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 25.44 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.002 3833 REMARK 3 ANGLE : 0.619 5239 REMARK 3 CHIRALITY : 0.039 642 REMARK 3 PLANARITY : 0.003 660 REMARK 3 DIHEDRAL : 10.513 2355 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 9 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 22 THROUGH 34 ) REMARK 3 ORIGIN FOR THE GROUP (A): -15.0062 -16.0373 -41.9303 REMARK 3 T TENSOR REMARK 3 T11: 0.3614 T22: 0.4375 REMARK 3 T33: 0.3179 T12: 0.1231 REMARK 3 T13: -0.0298 T23: -0.1237 REMARK 3 L TENSOR REMARK 3 L11: 0.9934 L22: 2.4904 REMARK 3 L33: 2.5311 L12: -0.2391 REMARK 3 L13: -0.7208 L23: -1.0211 REMARK 3 S TENSOR REMARK 3 S11: 0.0801 S12: 0.2158 S13: -0.0025 REMARK 3 S21: -0.6272 S22: -0.2998 S23: -0.2355 REMARK 3 S31: 0.8602 S32: 0.2307 S33: 0.0379 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 35 THROUGH 94 ) REMARK 3 ORIGIN FOR THE GROUP (A): -25.3742 -13.0364 -36.7224 REMARK 3 T TENSOR REMARK 3 T11: 0.2253 T22: 0.2032 REMARK 3 T33: 0.2391 T12: 0.0104 REMARK 3 T13: -0.0253 T23: -0.0489 REMARK 3 L TENSOR REMARK 3 L11: 1.2421 L22: 1.3794 REMARK 3 L33: 2.0516 L12: -0.5304 REMARK 3 L13: -0.4494 L23: 0.1726 REMARK 3 S TENSOR REMARK 3 S11: 0.0748 S12: 0.1714 S13: -0.3209 REMARK 3 S21: -0.1023 S22: -0.0031 S23: 0.0381 REMARK 3 S31: 0.3695 S32: 0.1223 S33: -0.0651 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 95 THROUGH 151 ) REMARK 3 ORIGIN FOR THE GROUP (A): -29.3077 -5.4499 -25.4256 REMARK 3 T TENSOR REMARK 3 T11: 0.1500 T22: 0.1588 REMARK 3 T33: 0.1497 T12: -0.0230 REMARK 3 T13: -0.0007 T23: -0.0118 REMARK 3 L TENSOR REMARK 3 L11: 1.8951 L22: 1.4243 REMARK 3 L33: 1.5889 L12: -0.0951 REMARK 3 L13: -0.4184 L23: 0.3110 REMARK 3 S TENSOR REMARK 3 S11: -0.0362 S12: 0.0223 S13: -0.0602 REMARK 3 S21: 0.0470 S22: -0.0149 S23: -0.0827 REMARK 3 S31: 0.1049 S32: 0.0782 S33: 0.0117 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 152 THROUGH 208 ) REMARK 3 ORIGIN FOR THE GROUP (A): -31.7702 9.2253 -20.4952 REMARK 3 T TENSOR REMARK 3 T11: 0.1493 T22: 0.1539 REMARK 3 T33: 0.1456 T12: -0.0401 REMARK 3 T13: -0.0048 T23: 0.0112 REMARK 3 L TENSOR REMARK 3 L11: 1.4654 L22: 1.4938 REMARK 3 L33: 1.2621 L12: -0.6010 REMARK 3 L13: 0.0533 L23: 0.5174 REMARK 3 S TENSOR REMARK 3 S11: -0.0236 S12: 0.0104 S13: -0.0193 REMARK 3 S21: -0.0145 S22: 0.0786 S23: -0.0324 REMARK 3 S31: 0.0052 S32: 0.0075 S33: -0.0490 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 209 THROUGH 262 ) REMARK 3 ORIGIN FOR THE GROUP (A): -31.3926 20.4199 -19.5411 REMARK 3 T TENSOR REMARK 3 T11: 0.1924 T22: 0.1481 REMARK 3 T33: 0.1624 T12: -0.0253 REMARK 3 T13: 0.0169 T23: 0.0092 REMARK 3 L TENSOR REMARK 3 L11: 2.5126 L22: 1.2565 REMARK 3 L33: 1.2895 L12: -0.4573 REMARK 3 L13: -0.5133 L23: 0.3147 REMARK 3 S TENSOR REMARK 3 S11: 0.0153 S12: 0.1993 S13: 0.1180 REMARK 3 S21: -0.0808 S22: 0.0071 S23: -0.0739 REMARK 3 S31: -0.2152 S32: -0.0582 S33: -0.0106 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 22 THROUGH 34 ) REMARK 3 ORIGIN FOR THE GROUP (A): -32.5071 35.7689 -26.1494 REMARK 3 T TENSOR REMARK 3 T11: 0.2426 T22: 0.3437 REMARK 3 T33: 0.2974 T12: 0.0320 REMARK 3 T13: -0.0633 T23: 0.1023 REMARK 3 L TENSOR REMARK 3 L11: 2.6267 L22: 3.1403 REMARK 3 L33: 3.9312 L12: -1.9143 REMARK 3 L13: -2.1538 L23: 2.0632 REMARK 3 S TENSOR REMARK 3 S11: -0.1957 S12: 0.3503 S13: -0.2683 REMARK 3 S21: -0.1355 S22: -0.4898 S23: 0.3730 REMARK 3 S31: -0.5554 S32: -0.1154 S33: 0.4183 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 35 THROUGH 151 ) REMARK 3 ORIGIN FOR THE GROUP (A): -18.7331 37.5568 -15.3988 REMARK 3 T TENSOR REMARK 3 T11: 0.1704 T22: 0.1216 REMARK 3 T33: 0.2001 T12: -0.0212 REMARK 3 T13: -0.0085 T23: 0.0089 REMARK 3 L TENSOR REMARK 3 L11: 1.6462 L22: 0.6816 REMARK 3 L33: 2.1521 L12: 0.2384 REMARK 3 L13: 0.6688 L23: 0.2971 REMARK 3 S TENSOR REMARK 3 S11: -0.0730 S12: 0.0203 S13: 0.1702 REMARK 3 S21: -0.0155 S22: -0.0228 S23: 0.0897 REMARK 3 S31: -0.1078 S32: -0.0757 S33: 0.0936 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 152 THROUGH 208 ) REMARK 3 ORIGIN FOR THE GROUP (A): -4.1654 25.1961 -4.7406 REMARK 3 T TENSOR REMARK 3 T11: 0.1749 T22: 0.1691 REMARK 3 T33: 0.1631 T12: -0.0389 REMARK 3 T13: -0.0203 T23: -0.0155 REMARK 3 L TENSOR REMARK 3 L11: 2.5536 L22: 0.8229 REMARK 3 L33: 1.4345 L12: -0.5350 REMARK 3 L13: 0.1126 L23: -0.5819 REMARK 3 S TENSOR REMARK 3 S11: 0.0507 S12: -0.1191 S13: 0.0692 REMARK 3 S21: 0.0425 S22: 0.0185 S23: 0.0019 REMARK 3 S31: 0.0819 S32: 0.0564 S33: -0.1110 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 209 THROUGH 262 ) REMARK 3 ORIGIN FOR THE GROUP (A): 1.9829 15.8302 -3.7436 REMARK 3 T TENSOR REMARK 3 T11: 0.2181 T22: 0.1539 REMARK 3 T33: 0.2168 T12: 0.0082 REMARK 3 T13: -0.0190 T23: -0.0186 REMARK 3 L TENSOR REMARK 3 L11: 2.0661 L22: 0.7610 REMARK 3 L33: 2.0060 L12: -0.0872 REMARK 3 L13: 1.1884 L23: -0.1559 REMARK 3 S TENSOR REMARK 3 S11: 0.0597 S12: 0.1326 S13: -0.2729 REMARK 3 S21: -0.1498 S22: 0.0748 S23: -0.0470 REMARK 3 S31: 0.1722 S32: 0.1526 S33: -0.1355 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : 1 REMARK 3 NCS GROUP : 1 REMARK 3 NCS OPERATOR : 1 REMARK 3 REFERENCE SELECTION: (CHAIN A AND (RESSEQ 22:54 OR (RESID 55 REMARK 3 AND (NAME N OR NAME CA OR NAME CB OR NAME REMARK 3 CG OR NAME CZ OR NAME OH OR NAME C OR REMARK 3 NAME O )) OR RESSEQ 56:147 OR (RESID 148 REMARK 3 AND (NAME N OR NAME CA OR NAME CB OR NAME REMARK 3 CG OR NAME CD OR NAME C OR NAME O )) OR REMARK 3 RESSEQ 149:150 OR (RESID 151 AND (NAME N REMARK 3 OR NAME CA OR NAME CB OR NAME CG OR NAME REMARK 3 CD1 OR NAME CD2)) OR RESSEQ 152:155 OR REMARK 3 (RESID 156 AND (NAME N OR NAME CA OR NAME REMARK 3 CB OR NAME CG OR NAME C OR NAME O )) OR REMARK 3 RESSEQ 157:262 OR RESSEQ 301:303)) REMARK 3 SELECTION : (CHAIN B AND (RESSEQ 22:54 OR (RESID 55 REMARK 3 AND (NAME N OR NAME CA OR NAME CB OR NAME REMARK 3 CG OR NAME CZ OR NAME OH OR NAME C OR REMARK 3 NAME O )) OR RESSEQ 56:150 OR (RESID 151 REMARK 3 AND (NAME N OR NAME CA OR NAME CB OR NAME REMARK 3 CG OR NAME CD1 OR NAME CD2)) OR RESSEQ REMARK 3 152:262 OR RESSEQ 301:303)) REMARK 3 ATOM PAIRS NUMBER : 2334 REMARK 3 RMSD : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5UF1 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 17-JAN-17. REMARK 100 THE DEPOSITION ID IS D_1000225749. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 25-JUL-15 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 5.2 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 23-ID-B REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.03320 REMARK 200 MONOCHROMATOR : DOUBLE CRYSTAL CRYO-COOLED REMARK 200 SI(111) REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 300 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 32373 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.030 REMARK 200 RESOLUTION RANGE LOW (A) : 47.902 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 85.5 REMARK 200 DATA REDUNDANCY : 5.900 REMARK 200 R MERGE (I) : 0.11900 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 8.2000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.03 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.10 REMARK 200 COMPLETENESS FOR SHELL (%) : 39.8 REMARK 200 DATA REDUNDANCY IN SHELL : 2.40 REMARK 200 R MERGE FOR SHELL (I) : 0.61300 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 5UEI REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 54.56 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.71 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 10 MG/ML O13, 14% PEG6000, 1 M LITHIUM REMARK 280 CHLORIDE, 0.1 M CITRATE, PH 5.2, 1.9 MM H-TRISACCHARIDE, VAPOR REMARK 280 DIFFUSION, SITTING DROP, TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X+1/2,Y+1/2,-Z REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 43.56200 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 39.48400 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 43.56200 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 39.48400 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 HIS B 16 REMARK 465 HIS B 17 REMARK 465 HIS B 18 REMARK 465 HIS B 19 REMARK 465 HIS B 20 REMARK 465 HIS B 21 REMARK 465 HIS A 16 REMARK 465 HIS A 17 REMARK 465 HIS A 18 REMARK 465 HIS A 19 REMARK 465 HIS A 20 REMARK 465 HIS A 21 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS B 63 CD CE NZ REMARK 470 ARG B 143 CZ NH1 NH2 REMARK 470 LYS B 148 CE NZ REMARK 470 LYS B 156 CD CE NZ REMARK 470 ARG B 162 CG CD NE CZ NH1 NH2 REMARK 470 GLU B 165 CD OE1 OE2 REMARK 470 LYS A 63 CD CE NZ REMARK 470 ARG A 143 CZ NH1 NH2 REMARK 470 ARG A 162 CG CD NE CZ NH1 NH2 REMARK 470 GLU A 165 CD OE1 OE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 PRO B 262 C - N - CA ANGL. DEV. = 9.9 DEGREES REMARK 500 PRO A 262 C - N - CA ANGL. DEV. = 10.6 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN B 83 -157.51 -122.56 REMARK 500 LEU B 96 58.31 -94.91 REMARK 500 ASN B 107 -152.00 -104.12 REMARK 500 ASN B 131 -157.05 -117.16 REMARK 500 ASN B 155 -158.25 -115.54 REMARK 500 ASN B 178 -154.72 -111.82 REMARK 500 ASN A 83 -157.34 -122.30 REMARK 500 LEU A 96 59.05 -94.07 REMARK 500 ASN A 107 -151.94 -104.37 REMARK 500 ASN A 131 -157.38 -116.82 REMARK 500 ASN A 155 -158.65 -115.96 REMARK 500 ASN A 178 -154.74 -111.63 REMARK 500 HIS A 221 47.46 -140.14 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 5EUI RELATED DB: PDB REMARK 900 RELATED ID: 5UF4 RELATED DB: PDB REMARK 900 RELATED ID: 5UFB RELATED DB: PDB REMARK 900 RELATED ID: 5UFC RELATED DB: PDB REMARK 900 RELATED ID: 5UFD RELATED DB: PDB REMARK 900 RELATED ID: 5UFF RELATED DB: PDB DBREF 5UF1 B 16 262 PDB 5UF1 5UF1 16 262 DBREF 5UF1 A 16 262 PDB 5UF1 5UF1 16 262 SEQRES 1 B 247 HIS HIS HIS HIS HIS HIS CYS PRO SER GLN CYS SER CYS SEQRES 2 B 247 SER GLY THR THR VAL ASN CYS LYS SER LYS SER LEU ALA SEQRES 3 B 247 SER VAL PRO ALA GLY ILE PRO THR THR THR ARG VAL LEU SEQRES 4 B 247 TYR LEU ASN ASP ASN GLN ILE THR LYS LEU GLU PRO GLY SEQRES 5 B 247 VAL PHE ASP ARG LEU VAL ASN LEU GLN THR LEU TRP LEU SEQRES 6 B 247 ASN ASN ASN GLN LEU THR SER LEU PRO ALA GLY LEU PHE SEQRES 7 B 247 ASP SER LEU THR GLN LEU THR ILE LEU ALA LEU ASP SER SEQRES 8 B 247 ASN GLN LEU GLN ALA LEU PRO VAL GLY VAL PHE GLY ARG SEQRES 9 B 247 LEU VAL ASP LEU GLN GLN LEU TYR LEU GLY SER ASN GLN SEQRES 10 B 247 LEU SER ALA LEU PRO SER ALA VAL PHE ASP ARG LEU VAL SEQRES 11 B 247 HIS LEU LYS GLU LEU LEU MET CYS CYS ASN LYS LEU THR SEQRES 12 B 247 GLU LEU PRO ARG GLY ILE GLU ARG LEU THR HIS LEU THR SEQRES 13 B 247 HIS LEU ALA LEU ASP GLN ASN GLN LEU LYS SER ILE PRO SEQRES 14 B 247 HIS GLY ALA PHE ASP ARG LEU SER SER LEU THR HIS ALA SEQRES 15 B 247 TYR LEU PHE GLY ASN PRO TRP ASP CYS GLU CYS ARG ASP SEQRES 16 B 247 ILE MET TYR LEU ARG ASN TRP VAL ALA ASP HIS THR SER SEQRES 17 B 247 ILE VAL MET ARG TRP ASP GLY LYS ALA VAL ASN ASP PRO SEQRES 18 B 247 ASP SER ALA LYS CYS ALA GLY THR ASN THR PRO VAL ARG SEQRES 19 B 247 ALA VAL THR GLU ALA SER THR SER PRO SER LYS CYS PRO SEQRES 1 A 247 HIS HIS HIS HIS HIS HIS CYS PRO SER GLN CYS SER CYS SEQRES 2 A 247 SER GLY THR THR VAL ASN CYS LYS SER LYS SER LEU ALA SEQRES 3 A 247 SER VAL PRO ALA GLY ILE PRO THR THR THR ARG VAL LEU SEQRES 4 A 247 TYR LEU ASN ASP ASN GLN ILE THR LYS LEU GLU PRO GLY SEQRES 5 A 247 VAL PHE ASP ARG LEU VAL ASN LEU GLN THR LEU TRP LEU SEQRES 6 A 247 ASN ASN ASN GLN LEU THR SER LEU PRO ALA GLY LEU PHE SEQRES 7 A 247 ASP SER LEU THR GLN LEU THR ILE LEU ALA LEU ASP SER SEQRES 8 A 247 ASN GLN LEU GLN ALA LEU PRO VAL GLY VAL PHE GLY ARG SEQRES 9 A 247 LEU VAL ASP LEU GLN GLN LEU TYR LEU GLY SER ASN GLN SEQRES 10 A 247 LEU SER ALA LEU PRO SER ALA VAL PHE ASP ARG LEU VAL SEQRES 11 A 247 HIS LEU LYS GLU LEU LEU MET CYS CYS ASN LYS LEU THR SEQRES 12 A 247 GLU LEU PRO ARG GLY ILE GLU ARG LEU THR HIS LEU THR SEQRES 13 A 247 HIS LEU ALA LEU ASP GLN ASN GLN LEU LYS SER ILE PRO SEQRES 14 A 247 HIS GLY ALA PHE ASP ARG LEU SER SER LEU THR HIS ALA SEQRES 15 A 247 TYR LEU PHE GLY ASN PRO TRP ASP CYS GLU CYS ARG ASP SEQRES 16 A 247 ILE MET TYR LEU ARG ASN TRP VAL ALA ASP HIS THR SER SEQRES 17 A 247 ILE VAL MET ARG TRP ASP GLY LYS ALA VAL ASN ASP PRO SEQRES 18 A 247 ASP SER ALA LYS CYS ALA GLY THR ASN THR PRO VAL ARG SEQRES 19 A 247 ALA VAL THR GLU ALA SER THR SER PRO SER LYS CYS PRO HET NAG C 1 15 HET GAL C 2 11 HET FUC C 3 10 HET NAG D 1 15 HET GAL D 2 11 HET FUC D 3 10 HET CL B 304 1 HETNAM NAG 2-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE HETNAM GAL BETA-D-GALACTOPYRANOSE HETNAM FUC ALPHA-L-FUCOPYRANOSE HETNAM CL CHLORIDE ION HETSYN NAG N-ACETYL-BETA-D-GLUCOSAMINE; 2-ACETAMIDO-2-DEOXY-BETA- HETSYN 2 NAG D-GLUCOSE; 2-ACETAMIDO-2-DEOXY-D-GLUCOSE; 2-ACETAMIDO- HETSYN 3 NAG 2-DEOXY-GLUCOSE; N-ACETYL-D-GLUCOSAMINE HETSYN GAL BETA-D-GALACTOSE; D-GALACTOSE; GALACTOSE HETSYN FUC ALPHA-L-FUCOSE; 6-DEOXY-ALPHA-L-GALACTOPYRANOSE; L- HETSYN 2 FUC FUCOSE; FUCOSE FORMUL 3 NAG 2(C8 H15 N O6) FORMUL 3 GAL 2(C6 H12 O6) FORMUL 3 FUC 2(C6 H12 O5) FORMUL 5 CL CL 1- FORMUL 6 HOH *361(H2 O) HELIX 1 AA1 GLY B 163 LEU B 167 5 5 HELIX 2 AA2 CYS B 208 ASP B 210 5 3 HELIX 3 AA3 ILE B 211 HIS B 221 1 11 HELIX 4 AA4 PRO B 236 ALA B 239 5 4 HELIX 5 AA5 PRO B 247 VAL B 251 5 5 HELIX 6 AA6 THR B 252 THR B 256 5 5 HELIX 7 AA7 SER B 257 CYS B 261 5 5 HELIX 8 AA8 GLY A 163 LEU A 167 5 5 HELIX 9 AA9 CYS A 208 ASP A 210 5 3 HELIX 10 AB1 ILE A 211 HIS A 221 1 11 HELIX 11 AB2 PRO A 236 ALA A 239 5 4 HELIX 12 AB3 PRO A 247 VAL A 251 5 5 HELIX 13 AB4 THR A 252 THR A 256 5 5 HELIX 14 AB5 SER A 257 CYS A 261 5 5 SHEET 1 AA111 SER B 27 SER B 29 0 SHEET 2 AA111 THR B 32 ASN B 34 -1 O ASN B 34 N SER B 27 SHEET 3 AA111 VAL B 53 TYR B 55 1 O VAL B 53 N VAL B 33 SHEET 4 AA111 THR B 77 TRP B 79 1 O THR B 77 N LEU B 54 SHEET 5 AA111 ILE B 101 ALA B 103 1 O ALA B 103 N LEU B 78 SHEET 6 AA111 GLN B 125 TYR B 127 1 O TYR B 127 N LEU B 102 SHEET 7 AA111 GLU B 149 LEU B 151 1 O GLU B 149 N LEU B 126 SHEET 8 AA111 HIS B 172 ALA B 174 1 O HIS B 172 N LEU B 150 SHEET 9 AA111 HIS B 196 TYR B 198 1 O HIS B 196 N LEU B 173 SHEET 10 AA111 VAL B 225 TRP B 228 1 O MET B 226 N ALA B 197 SHEET 11 AA111 ALA B 232 ASN B 234 -1 O VAL B 233 N ARG B 227 SHEET 1 AA211 SER A 27 SER A 29 0 SHEET 2 AA211 THR A 32 ASN A 34 -1 O ASN A 34 N SER A 27 SHEET 3 AA211 VAL A 53 TYR A 55 1 O TYR A 55 N VAL A 33 SHEET 4 AA211 THR A 77 TRP A 79 1 O TRP A 79 N LEU A 54 SHEET 5 AA211 ILE A 101 ALA A 103 1 O ALA A 103 N LEU A 78 SHEET 6 AA211 GLN A 125 TYR A 127 1 O GLN A 125 N LEU A 102 SHEET 7 AA211 GLU A 149 LEU A 151 1 O GLU A 149 N LEU A 126 SHEET 8 AA211 HIS A 172 ALA A 174 1 O HIS A 172 N LEU A 150 SHEET 9 AA211 HIS A 196 TYR A 198 1 O HIS A 196 N LEU A 173 SHEET 10 AA211 VAL A 225 TRP A 228 1 O MET A 226 N ALA A 197 SHEET 11 AA211 ALA A 232 ASN A 234 -1 O VAL A 233 N ARG A 227 SSBOND 1 CYS B 22 CYS B 28 1555 1555 2.04 SSBOND 2 CYS B 26 CYS B 35 1555 1555 2.03 SSBOND 3 CYS B 153 CYS B 154 1555 1555 2.05 SSBOND 4 CYS B 206 CYS B 241 1555 1555 2.03 SSBOND 5 CYS B 208 CYS B 261 1555 1555 2.03 SSBOND 6 CYS A 22 CYS A 28 1555 1555 2.03 SSBOND 7 CYS A 26 CYS A 35 1555 1555 2.03 SSBOND 8 CYS A 153 CYS A 154 1555 1555 2.05 SSBOND 9 CYS A 206 CYS A 241 1555 1555 2.03 SSBOND 10 CYS A 208 CYS A 261 1555 1555 2.03 LINK O4 NAG C 1 C1 GAL C 2 1555 1555 1.41 LINK O2 GAL C 2 C1 FUC C 3 1555 1555 1.43 LINK O4 NAG D 1 C1 GAL D 2 1555 1555 1.41 LINK O2 GAL D 2 C1 FUC D 3 1555 1555 1.43 CRYST1 87.124 78.968 83.420 90.00 90.00 90.00 P 21 21 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.011478 0.000000 0.000000 0.00000 SCALE2 0.000000 0.012663 0.000000 0.00000 SCALE3 0.000000 0.000000 0.011988 0.00000