HEADER VIRUS LIKE PARTICLE 03-JAN-17 5UF6 TITLE THE 2.8 A ELECTRON MICROSCOPY STRUCTURE OF ADENO-ASSOCIATED VIRUS-DJ TITLE 2 BOUND BY A HEPARANOID PENTASACCHARIDE COMPND MOL_ID: 1; COMPND 2 MOLECULE: CAPSID PROTEIN VP1; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ADENO-ASSOCIATED VIRUS; SOURCE 3 ORGANISM_TAXID: 272636; SOURCE 4 STRAIN: HYBRID OF SEROTYPES 2, 8, AND 9; SOURCE 5 GENE: CAPSID; SOURCE 6 EXPRESSION_SYSTEM: SPODOPTERA FRUGIPERDA; SOURCE 7 EXPRESSION_SYSTEM_COMMON: FALL ARMYWORM; SOURCE 8 EXPRESSION_SYSTEM_TAXID: 7108; SOURCE 9 EXPRESSION_SYSTEM_STRAIN: SF9; SOURCE 10 EXPRESSION_SYSTEM_VECTOR_TYPE: BACULOVIRUS; SOURCE 11 EXPRESSION_SYSTEM_PLASMID: PFBDDJM11 KEYWDS GLYCAN, RECEPTOR, ATTACHMENT, VIRUS LIKE PARTICLE EXPDTA ELECTRON MICROSCOPY AUTHOR Q.XIE,J.M.SPEAR,A.J.NOBLE,D.R.SOUSA,N.L.MEYER,O.DAVULCU,F.ZHANG, AUTHOR 2 R.J.LINHARDT,S.M.STAGG,M.CHAPMAN REVDAT 6 06-MAR-24 5UF6 1 JRNL REMARK HETSYN REVDAT 5 29-JUL-20 5UF6 1 COMPND REMARK HET HETNAM REVDAT 5 2 1 HETSYN FORMUL LINK SITE REVDAT 5 3 1 ATOM REVDAT 4 01-JAN-20 5UF6 1 REMARK REVDAT 3 13-SEP-17 5UF6 1 REMARK REVDAT 2 12-JUL-17 5UF6 1 HETSYN REVDAT 1 24-MAY-17 5UF6 0 JRNL AUTH Q.XIE,J.M.SPEAR,A.J.NOBLE,D.R.SOUSA,N.L.MEYER,O.DAVULCU, JRNL AUTH 2 F.ZHANG,R.J.LINHARDT,S.M.STAGG,M.S.CHAPMAN JRNL TITL THE 2.8 ANGSTROM ELECTRON MICROSCOPY STRUCTURE OF JRNL TITL 2 ADENO-ASSOCIATED VIRUS-DJ BOUND BY A HEPARINOID JRNL TITL 3 PENTASACCHARIDE. JRNL REF MOL THER METHODS CLIN DEV V. 5 1 2017 JRNL REFN ESSN 2329-0501 JRNL PMID 28480299 JRNL DOI 10.1016/J.OMTM.2017.02.004 REMARK 2 REMARK 2 RESOLUTION. 2.80 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 SOFTWARE PACKAGES : APPION, LEGINON, ACE, CTFFIND, REMARK 3 FREALIGN, FREALIGN, FREALIGN, FREALIGN REMARK 3 RECONSTRUCTION SCHEMA : NULL REMARK 3 REMARK 3 EM MAP-MODEL FITTING AND REFINEMENT REMARK 3 PDB ENTRY : NULL REMARK 3 REFINEMENT SPACE : NULL REMARK 3 REFINEMENT PROTOCOL : NULL REMARK 3 REFINEMENT TARGET : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE : NULL REMARK 3 REMARK 3 FITTING PROCEDURE : NULL REMARK 3 REMARK 3 EM IMAGE RECONSTRUCTION STATISTICS REMARK 3 NOMINAL PIXEL SIZE (ANGSTROMS) : NULL REMARK 3 ACTUAL PIXEL SIZE (ANGSTROMS) : NULL REMARK 3 EFFECTIVE RESOLUTION (ANGSTROMS) : 2.800 REMARK 3 NUMBER OF PARTICLES : 107454 REMARK 3 CTF CORRECTION METHOD : PHASE FLIPPING AND AMPLITUDE REMARK 3 CORRECTION REMARK 3 REMARK 3 EM RECONSTRUCTION MAGNIFICATION CALIBRATION: NULL REMARK 3 REMARK 3 OTHER DETAILS: NULL REMARK 4 REMARK 4 5UF6 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 26-JAN-17. REMARK 100 THE DEPOSITION ID IS D_1000225473. REMARK 245 REMARK 245 EXPERIMENTAL DETAILS REMARK 245 RECONSTRUCTION METHOD : SINGLE PARTICLE REMARK 245 SPECIMEN TYPE : NULL REMARK 245 REMARK 245 ELECTRON MICROSCOPE SAMPLE REMARK 245 SAMPLE TYPE : PARTICLE REMARK 245 PARTICLE TYPE : POINT REMARK 245 NAME OF SAMPLE : ADENO-ASSOCIATED VIRUS REMARK 245 SAMPLE CONCENTRATION (MG ML-1) : 0.60 REMARK 245 SAMPLE SUPPORT DETAILS : NULL REMARK 245 SAMPLE VITRIFICATION DETAILS : BLOT FORCE = 1, BLOT TIME = 3 REMARK 245 SECONDS, TOTAL BLOTS = 1 REMARK 245 SAMPLE BUFFER : NULL REMARK 245 PH : 7.40 REMARK 245 SAMPLE DETAILS : NULL REMARK 245 REMARK 245 DATA ACQUISITION REMARK 245 DATE OF EXPERIMENT : NULL REMARK 245 NUMBER OF MICROGRAPHS-IMAGES : 1051 REMARK 245 TEMPERATURE (KELVIN) : NULL REMARK 245 MICROSCOPE MODEL : FEI TITAN KRIOS REMARK 245 DETECTOR TYPE : DIRECT ELECTRON DE-20 (5K X REMARK 245 3K) REMARK 245 MINIMUM DEFOCUS (NM) : 750.00 REMARK 245 MAXIMUM DEFOCUS (NM) : 3000.00 REMARK 245 MINIMUM TILT ANGLE (DEGREES) : NULL REMARK 245 MAXIMUM TILT ANGLE (DEGREES) : NULL REMARK 245 NOMINAL CS : 2.70 REMARK 245 IMAGING MODE : BRIGHT FIELD REMARK 245 ELECTRON DOSE (ELECTRONS NM**-2) : 6600.00 REMARK 245 ILLUMINATION MODE : FLOOD BEAM REMARK 245 NOMINAL MAGNIFICATION : 29000 REMARK 245 CALIBRATED MAGNIFICATION : NULL REMARK 245 SOURCE : FIELD EMISSION GUN REMARK 245 ACCELERATION VOLTAGE (KV) : 300 REMARK 245 IMAGING DETAILS : NULL REMARK 247 REMARK 247 ELECTRON MICROSCOPY REMARK 247 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM ELECTRON REMARK 247 MICROSCOPY DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE REMARK 247 THAT CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES REMARK 247 ON THESE RECORDS ARE MEANINGLESS EXCEPT FOR THE CALCULATION REMARK 247 OF THE STRUCTURE FACTORS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 THE ASSEMBLY REPRESENTED IN THIS ENTRY HAS REGULAR REMARK 300 ICOSAHEDRAL POINT SYMMETRY (SCHOENFLIES SYMBOL = I). REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 0.500000 -0.809017 -0.309017 0.00000 REMARK 350 BIOMT2 2 0.809017 0.309017 0.500000 0.00000 REMARK 350 BIOMT3 2 -0.309017 -0.500000 0.809017 0.00000 REMARK 350 BIOMT1 3 -0.309017 -0.500000 -0.809017 0.00000 REMARK 350 BIOMT2 3 0.500000 -0.809017 0.309017 0.00000 REMARK 350 BIOMT3 3 -0.809017 -0.309017 0.500000 0.00000 REMARK 350 BIOMT1 4 -0.309017 0.500000 -0.809017 0.00000 REMARK 350 BIOMT2 4 -0.500000 -0.809017 -0.309017 0.00000 REMARK 350 BIOMT3 4 -0.809017 0.309017 0.500000 0.00000 REMARK 350 BIOMT1 5 0.500000 0.809017 -0.309017 0.00000 REMARK 350 BIOMT2 5 -0.809017 0.309017 -0.500000 0.00000 REMARK 350 BIOMT3 5 -0.309017 0.500000 0.809017 0.00000 REMARK 350 BIOMT1 6 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 6 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT3 6 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 7 -0.500000 0.809017 0.309017 0.00000 REMARK 350 BIOMT2 7 -0.809017 -0.309017 -0.500000 0.00000 REMARK 350 BIOMT3 7 -0.309017 -0.500000 0.809017 0.00000 REMARK 350 BIOMT1 8 0.309017 0.500000 0.809017 0.00000 REMARK 350 BIOMT2 8 -0.500000 0.809017 -0.309017 0.00000 REMARK 350 BIOMT3 8 -0.809017 -0.309017 0.500000 0.00000 REMARK 350 BIOMT1 9 0.309017 -0.500000 0.809017 0.00000 REMARK 350 BIOMT2 9 0.500000 0.809017 0.309017 0.00000 REMARK 350 BIOMT3 9 -0.809017 0.309017 0.500000 0.00000 REMARK 350 BIOMT1 10 -0.500000 -0.809017 0.309017 0.00000 REMARK 350 BIOMT2 10 0.809017 -0.309017 0.500000 0.00000 REMARK 350 BIOMT3 10 -0.309017 0.500000 0.809017 0.00000 REMARK 350 BIOMT1 11 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 11 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT3 11 0.000000 0.000000 -1.000000 0.00000 REMARK 350 BIOMT1 12 0.500000 -0.809017 -0.309017 0.00000 REMARK 350 BIOMT2 12 -0.809017 -0.309017 -0.500000 0.00000 REMARK 350 BIOMT3 12 0.309017 0.500000 -0.809017 0.00000 REMARK 350 BIOMT1 13 -0.309017 -0.500000 -0.809017 0.00000 REMARK 350 BIOMT2 13 -0.500000 0.809017 -0.309017 0.00000 REMARK 350 BIOMT3 13 0.809017 0.309017 -0.500000 0.00000 REMARK 350 BIOMT1 14 -0.309017 0.500000 -0.809017 0.00000 REMARK 350 BIOMT2 14 0.500000 0.809017 0.309017 0.00000 REMARK 350 BIOMT3 14 0.809017 -0.309017 -0.500000 0.00000 REMARK 350 BIOMT1 15 0.500000 0.809017 -0.309017 0.00000 REMARK 350 BIOMT2 15 0.809017 -0.309017 0.500000 0.00000 REMARK 350 BIOMT3 15 0.309017 -0.500000 -0.809017 0.00000 REMARK 350 BIOMT1 16 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 16 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 16 0.000000 0.000000 -1.000000 0.00000 REMARK 350 BIOMT1 17 -0.500000 0.809017 0.309017 0.00000 REMARK 350 BIOMT2 17 0.809017 0.309017 0.500000 0.00000 REMARK 350 BIOMT3 17 0.309017 0.500000 -0.809017 0.00000 REMARK 350 BIOMT1 18 0.309017 0.500000 0.809017 0.00000 REMARK 350 BIOMT2 18 0.500000 -0.809017 0.309017 0.00000 REMARK 350 BIOMT3 18 0.809017 0.309017 -0.500000 0.00000 REMARK 350 BIOMT1 19 0.309017 -0.500000 0.809017 0.00000 REMARK 350 BIOMT2 19 -0.500000 -0.809017 -0.309017 0.00000 REMARK 350 BIOMT3 19 0.809017 -0.309017 -0.500000 0.00000 REMARK 350 BIOMT1 20 -0.500000 -0.809017 0.309017 0.00000 REMARK 350 BIOMT2 20 -0.809017 0.309017 -0.500000 0.00000 REMARK 350 BIOMT3 20 0.309017 -0.500000 -0.809017 0.00000 REMARK 350 BIOMT1 21 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT2 21 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT3 21 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT1 22 -0.809017 -0.309017 -0.500000 0.00000 REMARK 350 BIOMT2 22 -0.309017 -0.500000 0.809017 0.00000 REMARK 350 BIOMT3 22 -0.500000 0.809017 0.309017 0.00000 REMARK 350 BIOMT1 23 -0.500000 0.809017 -0.309017 0.00000 REMARK 350 BIOMT2 23 -0.809017 -0.309017 0.500000 0.00000 REMARK 350 BIOMT3 23 0.309017 0.500000 0.809017 0.00000 REMARK 350 BIOMT1 24 0.500000 0.809017 0.309017 0.00000 REMARK 350 BIOMT2 24 -0.809017 0.309017 0.500000 0.00000 REMARK 350 BIOMT3 24 0.309017 -0.500000 0.809017 0.00000 REMARK 350 BIOMT1 25 0.809017 -0.309017 0.500000 0.00000 REMARK 350 BIOMT2 25 -0.309017 0.500000 0.809017 0.00000 REMARK 350 BIOMT3 25 -0.500000 -0.809017 0.309017 0.00000 REMARK 350 BIOMT1 26 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT2 26 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT3 26 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT1 27 0.809017 0.309017 0.500000 0.00000 REMARK 350 BIOMT2 27 -0.309017 -0.500000 0.809017 0.00000 REMARK 350 BIOMT3 27 0.500000 -0.809017 -0.309017 0.00000 REMARK 350 BIOMT1 28 0.500000 -0.809017 0.309017 0.00000 REMARK 350 BIOMT2 28 -0.809017 -0.309017 0.500000 0.00000 REMARK 350 BIOMT3 28 -0.309017 -0.500000 -0.809017 0.00000 REMARK 350 BIOMT1 29 -0.500000 -0.809017 -0.309017 0.00000 REMARK 350 BIOMT2 29 -0.809017 0.309017 0.500000 0.00000 REMARK 350 BIOMT3 29 -0.309017 0.500000 -0.809017 0.00000 REMARK 350 BIOMT1 30 -0.809017 0.309017 -0.500000 0.00000 REMARK 350 BIOMT2 30 -0.309017 0.500000 0.809017 0.00000 REMARK 350 BIOMT3 30 0.500000 0.809017 -0.309017 0.00000 REMARK 350 BIOMT1 31 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT2 31 0.000000 0.000000 -1.000000 0.00000 REMARK 350 BIOMT3 31 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT1 32 0.809017 0.309017 0.500000 0.00000 REMARK 350 BIOMT2 32 0.309017 0.500000 -0.809017 0.00000 REMARK 350 BIOMT3 32 -0.500000 0.809017 0.309017 0.00000 REMARK 350 BIOMT1 33 0.500000 -0.809017 0.309017 0.00000 REMARK 350 BIOMT2 33 0.809017 0.309017 -0.500000 0.00000 REMARK 350 BIOMT3 33 0.309017 0.500000 0.809017 0.00000 REMARK 350 BIOMT1 34 -0.500000 -0.809017 -0.309017 0.00000 REMARK 350 BIOMT2 34 0.809017 -0.309017 -0.500000 0.00000 REMARK 350 BIOMT3 34 0.309017 -0.500000 0.809017 0.00000 REMARK 350 BIOMT1 35 -0.809017 0.309017 -0.500000 0.00000 REMARK 350 BIOMT2 35 0.309017 -0.500000 -0.809017 0.00000 REMARK 350 BIOMT3 35 -0.500000 -0.809017 0.309017 0.00000 REMARK 350 BIOMT1 36 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT2 36 0.000000 0.000000 -1.000000 0.00000 REMARK 350 BIOMT3 36 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT1 37 -0.809017 -0.309017 -0.500000 0.00000 REMARK 350 BIOMT2 37 0.309017 0.500000 -0.809017 0.00000 REMARK 350 BIOMT3 37 0.500000 -0.809017 -0.309017 0.00000 REMARK 350 BIOMT1 38 -0.500000 0.809017 -0.309017 0.00000 REMARK 350 BIOMT2 38 0.809017 0.309017 -0.500000 0.00000 REMARK 350 BIOMT3 38 -0.309017 -0.500000 -0.809017 0.00000 REMARK 350 BIOMT1 39 0.500000 0.809017 0.309017 0.00000 REMARK 350 BIOMT2 39 0.809017 -0.309017 -0.500000 0.00000 REMARK 350 BIOMT3 39 -0.309017 0.500000 -0.809017 0.00000 REMARK 350 BIOMT1 40 0.809017 -0.309017 0.500000 0.00000 REMARK 350 BIOMT2 40 0.309017 -0.500000 -0.809017 0.00000 REMARK 350 BIOMT3 40 0.500000 0.809017 -0.309017 0.00000 REMARK 350 BIOMT1 41 0.000000 0.000000 -1.000000 0.00000 REMARK 350 BIOMT2 41 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT3 41 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT1 42 0.309017 0.500000 -0.809017 0.00000 REMARK 350 BIOMT2 42 -0.500000 0.809017 0.309017 0.00000 REMARK 350 BIOMT3 42 0.809017 0.309017 0.500000 0.00000 REMARK 350 BIOMT1 43 0.809017 0.309017 -0.500000 0.00000 REMARK 350 BIOMT2 43 0.309017 0.500000 0.809017 0.00000 REMARK 350 BIOMT3 43 0.500000 -0.809017 0.309017 0.00000 REMARK 350 BIOMT1 44 0.809017 -0.309017 -0.500000 0.00000 REMARK 350 BIOMT2 44 0.309017 -0.500000 0.809017 0.00000 REMARK 350 BIOMT3 44 -0.500000 -0.809017 -0.309017 0.00000 REMARK 350 BIOMT1 45 0.309017 -0.500000 -0.809017 0.00000 REMARK 350 BIOMT2 45 -0.500000 -0.809017 0.309017 0.00000 REMARK 350 BIOMT3 45 -0.809017 0.309017 -0.500000 0.00000 REMARK 350 BIOMT1 46 0.000000 0.000000 -1.000000 0.00000 REMARK 350 BIOMT2 46 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT3 46 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT1 47 0.309017 0.500000 -0.809017 0.00000 REMARK 350 BIOMT2 47 0.500000 -0.809017 -0.309017 0.00000 REMARK 350 BIOMT3 47 -0.809017 -0.309017 -0.500000 0.00000 REMARK 350 BIOMT1 48 0.809017 0.309017 -0.500000 0.00000 REMARK 350 BIOMT2 48 -0.309017 -0.500000 -0.809017 0.00000 REMARK 350 BIOMT3 48 -0.500000 0.809017 -0.309017 0.00000 REMARK 350 BIOMT1 49 0.809017 -0.309017 -0.500000 0.00000 REMARK 350 BIOMT2 49 -0.309017 0.500000 -0.809017 0.00000 REMARK 350 BIOMT3 49 0.500000 0.809017 0.309017 0.00000 REMARK 350 BIOMT1 50 0.309017 -0.500000 -0.809017 0.00000 REMARK 350 BIOMT2 50 0.500000 0.809017 -0.309017 0.00000 REMARK 350 BIOMT3 50 0.809017 -0.309017 0.500000 0.00000 REMARK 350 BIOMT1 51 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT2 51 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT3 51 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT1 52 -0.309017 -0.500000 0.809017 0.00000 REMARK 350 BIOMT2 52 -0.500000 0.809017 0.309017 0.00000 REMARK 350 BIOMT3 52 -0.809017 -0.309017 -0.500000 0.00000 REMARK 350 BIOMT1 53 -0.809017 -0.309017 0.500000 0.00000 REMARK 350 BIOMT2 53 0.309017 0.500000 0.809017 0.00000 REMARK 350 BIOMT3 53 -0.500000 0.809017 -0.309017 0.00000 REMARK 350 BIOMT1 54 -0.809017 0.309017 0.500000 0.00000 REMARK 350 BIOMT2 54 0.309017 -0.500000 0.809017 0.00000 REMARK 350 BIOMT3 54 0.500000 0.809017 0.309017 0.00000 REMARK 350 BIOMT1 55 -0.309017 0.500000 0.809017 0.00000 REMARK 350 BIOMT2 55 -0.500000 -0.809017 0.309017 0.00000 REMARK 350 BIOMT3 55 0.809017 -0.309017 0.500000 0.00000 REMARK 350 BIOMT1 56 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT2 56 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT3 56 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT1 57 -0.309017 -0.500000 0.809017 0.00000 REMARK 350 BIOMT2 57 0.500000 -0.809017 -0.309017 0.00000 REMARK 350 BIOMT3 57 0.809017 0.309017 0.500000 0.00000 REMARK 350 BIOMT1 58 -0.809017 -0.309017 0.500000 0.00000 REMARK 350 BIOMT2 58 -0.309017 -0.500000 -0.809017 0.00000 REMARK 350 BIOMT3 58 0.500000 -0.809017 0.309017 0.00000 REMARK 350 BIOMT1 59 -0.809017 0.309017 0.500000 0.00000 REMARK 350 BIOMT2 59 -0.309017 0.500000 -0.809017 0.00000 REMARK 350 BIOMT3 59 -0.500000 -0.809017 -0.309017 0.00000 REMARK 350 BIOMT1 60 -0.309017 0.500000 0.809017 0.00000 REMARK 350 BIOMT2 60 0.500000 0.809017 -0.309017 0.00000 REMARK 350 BIOMT3 60 -0.809017 0.309017 -0.500000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 CG2 THR A 453 O HOH A 943 1.44 REMARK 500 CG LYS A 690 O HOH A 920 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 CYS A 230 66.49 -150.72 REMARK 500 ASN A 253 15.39 50.37 REMARK 500 SER A 424 90.42 -67.01 REMARK 500 PRO A 438 5.17 -68.58 REMARK 500 THR A 457 40.70 -88.39 REMARK 500 GLN A 475 170.15 -58.69 REMARK 500 GLU A 550 -170.26 -59.91 REMARK 500 GLU A 564 32.63 -82.05 REMARK 500 ALA A 592 108.85 -56.48 REMARK 500 TYR A 614 89.36 65.15 REMARK 500 LEU A 615 -10.47 -38.83 REMARK 500 PRO A 632 35.16 -54.23 REMARK 500 ARG A 731 79.14 -61.08 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 954 DISTANCE = 6.63 ANGSTROMS REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: EMD-8574 RELATED DB: EMDB REMARK 900 RELATED ID: EMD-6470 RELATED DB: EMDB DBREF 5UF6 A 221 737 PDB 5UF6 5UF6 221 737 SEQRES 1 A 517 VAL GLY ASN SER SER GLY ASN TRP HIS CYS ASP SER THR SEQRES 2 A 517 TRP MET GLY ASP ARG VAL ILE THR THR SER THR ARG THR SEQRES 3 A 517 TRP ALA LEU PRO THR TYR ASN ASN HIS LEU TYR LYS GLN SEQRES 4 A 517 ILE SER ASN SER THR SER GLY GLY SER SER ASN ASP ASN SEQRES 5 A 517 ALA TYR PHE GLY TYR SER THR PRO TRP GLY TYR PHE ASP SEQRES 6 A 517 PHE ASN ARG PHE HIS CYS HIS PHE SER PRO ARG ASP TRP SEQRES 7 A 517 GLN ARG LEU ILE ASN ASN ASN TRP GLY PHE ARG PRO LYS SEQRES 8 A 517 ARG LEU SER PHE LYS LEU PHE ASN ILE GLN VAL LYS GLU SEQRES 9 A 517 VAL THR GLN ASN GLU GLY THR LYS THR ILE ALA ASN ASN SEQRES 10 A 517 LEU THR SER THR ILE GLN VAL PHE THR ASP SER GLU TYR SEQRES 11 A 517 GLN LEU PRO TYR VAL LEU GLY SER ALA HIS GLN GLY CYS SEQRES 12 A 517 LEU PRO PRO PHE PRO ALA ASP VAL PHE MET ILE PRO GLN SEQRES 13 A 517 TYR GLY TYR LEU THR LEU ASN ASN GLY SER GLN ALA VAL SEQRES 14 A 517 GLY ARG SER SER PHE TYR CYS LEU GLU TYR PHE PRO SER SEQRES 15 A 517 GLN MET LEU ARG THR GLY ASN ASN PHE GLN PHE THR TYR SEQRES 16 A 517 THR PHE GLU ASP VAL PRO PHE HIS SER SER TYR ALA HIS SEQRES 17 A 517 SER GLN SER LEU ASP ARG LEU MET ASN PRO LEU ILE ASP SEQRES 18 A 517 GLN TYR LEU TYR TYR LEU SER ARG THR GLN THR THR GLY SEQRES 19 A 517 GLY THR THR ASN THR GLN THR LEU GLY PHE SER GLN GLY SEQRES 20 A 517 GLY PRO ASN THR MET ALA ASN GLN ALA LYS ASN TRP LEU SEQRES 21 A 517 PRO GLY PRO CYS TYR ARG GLN GLN ARG VAL SER LYS THR SEQRES 22 A 517 SER ALA ASP ASN ASN ASN SER GLU TYR SER TRP THR GLY SEQRES 23 A 517 ALA THR LYS TYR HIS LEU ASN GLY ARG ASP SER LEU VAL SEQRES 24 A 517 ASN PRO GLY PRO ALA MET ALA SER HIS LYS ASP ASP GLU SEQRES 25 A 517 GLU LYS PHE PHE PRO GLN SER GLY VAL LEU ILE PHE GLY SEQRES 26 A 517 LYS GLN GLY SER GLU LYS THR ASN VAL ASP ILE GLU LYS SEQRES 27 A 517 VAL MET ILE THR ASP GLU GLU GLU ILE ARG THR THR ASN SEQRES 28 A 517 PRO VAL ALA THR GLU GLN TYR GLY SER VAL SER THR ASN SEQRES 29 A 517 LEU GLN ARG GLY ASN ARG GLN ALA ALA THR ALA ASP VAL SEQRES 30 A 517 ASN THR GLN GLY VAL LEU PRO GLY MET VAL TRP GLN ASP SEQRES 31 A 517 ARG ASP VAL TYR LEU GLN GLY PRO ILE TRP ALA LYS ILE SEQRES 32 A 517 PRO HIS THR ASP GLY HIS PHE HIS PRO SER PRO LEU MET SEQRES 33 A 517 GLY GLY PHE GLY LEU LYS HIS PRO PRO PRO GLN ILE LEU SEQRES 34 A 517 ILE LYS ASN THR PRO VAL PRO ALA ASP PRO PRO THR THR SEQRES 35 A 517 PHE ASN GLN SER LYS LEU ASN SER PHE ILE THR GLN TYR SEQRES 36 A 517 SER THR GLY GLN VAL SER VAL GLU ILE GLU TRP GLU LEU SEQRES 37 A 517 GLN LYS GLU ASN SER LYS ARG TRP ASN PRO GLU ILE GLN SEQRES 38 A 517 TYR THR SER ASN TYR TYR LYS SER THR SER VAL ASP PHE SEQRES 39 A 517 ALA VAL ASN THR GLU GLY VAL TYR SER GLU PRO ARG PRO SEQRES 40 A 517 ILE GLY THR ARG TYR LEU THR ARG ASN LEU HET ZDO B 1 21 HET IDS B 2 16 HET SUS B 3 23 HET BDP B 4 12 HET SGN B 5 19 HETNAM ZDO METHYL 2-DEOXY-6-O-SULFO-2-(SULFOAMINO)-ALPHA-D- HETNAM 2 ZDO GLUCOPYRANOSIDE HETNAM IDS 2-O-SULFO-ALPHA-L-IDOPYRANURONIC ACID HETNAM SUS 2-DEOXY-3,6-DI-O-SULFO-2-(SULFOAMINO)-ALPHA-D- HETNAM 2 SUS GLUCOPYRANOSE HETNAM BDP BETA-D-GLUCOPYRANURONIC ACID HETNAM SGN 2-DEOXY-6-O-SULFO-2-(SULFOAMINO)-ALPHA-D-GLUCOPYRANOSE HETSYN IDS O2-SULFO-GLUCURONIC ACID; 2-O-SULFO-ALPHA-L-IDURONIC HETSYN 2 IDS ACID; 2-O-SULFO-L-IDURONIC ACID; 2-O-SULFO-IDURONIC HETSYN 3 IDS ACID HETSYN SUS 3,6-DI-O-SULFO-N-SULFO-ALPHA-D-GLUCOSAMINE; 2-DEOXY-3, HETSYN 2 SUS 6-DI-O-SULFO-2-(SULFOAMINO)-ALPHA-D-GLUCOSE; 2-DEOXY- HETSYN 3 SUS 3,6-DI-O-SULFO-2-(SULFOAMINO)-D-GLUCOSE; 2-DEOXY-3,6- HETSYN 4 SUS DI-O-SULFO-2-(SULFOAMINO)-GLUCOSE HETSYN BDP BETA-D-GLUCURONIC ACID; D-GLUCURONIC ACID; GLUCURONIC HETSYN 2 BDP ACID HETSYN SGN N,O6-DISULFO-GLUCOSAMINE; 6-O-SULFO-N-SULFO-ALPHA-D- HETSYN 2 SGN GLUCOSAMINE; 2-DEOXY-6-O-SULFO-2-(SULFOAMINO)-ALPHA-D- HETSYN 3 SGN GLUCOSE; 2-DEOXY-6-O-SULFO-2-(SULFOAMINO)-D-GLUCOSE; HETSYN 4 SGN 2-DEOXY-6-O-SULFO-2-(SULFOAMINO)-GLUCOSE FORMUL 2 ZDO C7 H15 N O11 S2 FORMUL 2 IDS C6 H10 O10 S FORMUL 2 SUS C6 H13 N O14 S3 FORMUL 2 BDP C6 H10 O7 FORMUL 2 SGN C6 H13 N O11 S2 FORMUL 3 HOH *54(H2 O) HELIX 1 AA1 THR A 251 HIS A 255 5 5 HELIX 2 AA2 ARG A 288 HIS A 292 5 5 HELIX 3 AA3 SER A 294 ASN A 303 1 10 HELIX 4 AA4 CYS A 396 PHE A 400 5 5 HELIX 5 AA5 THR A 493 ASN A 497 5 5 HELIX 6 AA6 ASP A 555 GLU A 557 5 3 HELIX 7 AA7 GLU A 564 ARG A 568 5 5 SHEET 1 AA1 3 SER A 232 TRP A 234 0 SHEET 2 AA1 3 ARG A 238 LEU A 249 -1 O ILE A 240 N THR A 233 SHEET 3 AA1 3 PHE A 372 MET A 373 1 O PHE A 372 N THR A 246 SHEET 1 AA2 5 PHE A 372 MET A 373 0 SHEET 2 AA2 5 ARG A 238 LEU A 249 1 N THR A 246 O PHE A 372 SHEET 3 AA2 5 GLN A 674 LYS A 690 -1 O SER A 676 N LEU A 249 SHEET 4 AA2 5 ASN A 305 ASN A 328 -1 N LYS A 311 O GLU A 685 SHEET 5 AA2 5 THR A 331 ASN A 336 -1 O ALA A 335 N GLU A 324 SHEET 1 AA3 3 THR A 331 ASN A 336 0 SHEET 2 AA3 3 ASN A 305 ASN A 328 -1 N GLU A 324 O ALA A 335 SHEET 3 AA3 3 HIS A 423 SER A 424 -1 O HIS A 423 N PHE A 308 SHEET 1 AA4 3 HIS A 423 SER A 424 0 SHEET 2 AA4 3 ASN A 305 ASN A 328 -1 N PHE A 308 O HIS A 423 SHEET 3 AA4 3 PHE A 411 THR A 416 -1 O TYR A 415 N LEU A 313 SHEET 1 AA5 5 PHE A 411 THR A 416 0 SHEET 2 AA5 5 ASN A 305 ASN A 328 -1 N LEU A 313 O TYR A 415 SHEET 3 AA5 5 GLN A 674 LYS A 690 -1 O GLU A 685 N LYS A 311 SHEET 4 AA5 5 ARG A 238 LEU A 249 -1 N LEU A 249 O SER A 676 SHEET 5 AA5 5 SER A 232 TRP A 234 -1 N THR A 233 O ILE A 240 SHEET 1 AA6 4 LYS A 258 SER A 261 0 SHEET 2 AA6 4 PHE A 275 PHE A 284 -1 O SER A 278 N LYS A 258 SHEET 3 AA6 4 GLN A 647 ASN A 652 -1 O ILE A 650 N GLY A 282 SHEET 4 AA6 4 ILE A 342 ASP A 347 -1 N PHE A 345 O LEU A 649 SHEET 1 AA7 3 LYS A 258 SER A 261 0 SHEET 2 AA7 3 PHE A 275 PHE A 284 -1 O SER A 278 N LYS A 258 SHEET 3 AA7 3 GLN A 376 LEU A 380 -1 O TYR A 377 N TRP A 281 SHEET 1 AA8 2 ALA A 427 HIS A 428 0 SHEET 2 AA8 2 THR A 734 ARG A 735 1 O ARG A 735 N ALA A 427 SHEET 1 AA9 2 TYR A 445 GLN A 451 0 SHEET 2 AA9 2 GLN A 460 GLN A 466 -1 O GLY A 463 N ARG A 449 SHEET 1 AB1 2 LEU A 480 PRO A 481 0 SHEET 2 AB1 2 MET A 606 VAL A 607 1 O VAL A 607 N LEU A 480 SHEET 1 AB2 2 CYS A 484 TYR A 485 0 SHEET 2 AB2 2 THR A 599 GLN A 600 -1 O GLN A 600 N CYS A 484 SHEET 1 AB3 2 ARG A 489 SER A 491 0 SHEET 2 AB3 2 PHE A 535 PRO A 537 -1 O PHE A 536 N VAL A 490 SHEET 1 AB4 2 LYS A 509 LEU A 512 0 SHEET 2 AB4 2 ARG A 515 LEU A 518 -1 O SER A 517 N TYR A 510 SHEET 1 AB5 2 ILE A 543 GLY A 545 0 SHEET 2 AB5 2 VAL A 559 ILE A 561 -1 O MET A 560 N PHE A 544 SHEET 1 AB6 2 GLY A 579 SER A 582 0 SHEET 2 AB6 2 THR A 594 VAL A 597 -1 O ALA A 595 N VAL A 581 SHEET 1 AB7 2 TRP A 620 LYS A 622 0 SHEET 2 AB7 2 PHE A 639 LEU A 641 1 O LEU A 641 N ALA A 621 LINK O4 ZDO B 1 C1 IDS B 2 1555 1555 1.43 LINK O4 IDS B 2 C1 SUS B 3 1555 1555 1.43 LINK O4 SUS B 3 C1 BDP B 4 1555 1555 1.42 LINK O4 BDP B 4 C1 SGN B 5 1555 1555 1.42 CISPEP 1 ASN A 520 PRO A 521 0 -1.22 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000