HEADER HYDROLASE/DE NOVO PROTEIN 04-JAN-17 5UFE TITLE WILD-TYPE K-RAS(GNP)/R11.1.6 COMPLEX COMPND MOL_ID: 1; COMPND 2 MOLECULE: GTPASE KRAS; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: UNP RESIDUES 1-166; COMPND 5 SYNONYM: K-RAS 2,KI-RAS,C-K-RAS,C-KI-RAS; COMPND 6 ENGINEERED: YES; COMPND 7 MOL_ID: 2; COMPND 8 MOLECULE: R11.1.6; COMPND 9 CHAIN: B; COMPND 10 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: KRAS, KRAS2, RASK2; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 MOL_ID: 2; SOURCE 9 ORGANISM_SCIENTIFIC: SULFOLOBUS SOLFATARICUS; SOURCE 10 ORGANISM_TAXID: 2287; SOURCE 11 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 12 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS RAS, GTPASE, INHIBITOR, BINDER, HYDROLASE-DE NOVO PROTEIN COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR J.A.PARKER,C.MATTOS REVDAT 4 04-OCT-23 5UFE 1 LINK REVDAT 3 27-NOV-19 5UFE 1 REMARK REVDAT 2 20-NOV-19 5UFE 1 LINK REVDAT 1 02-AUG-17 5UFE 0 JRNL AUTH M.J.KAUKE,M.W.TRAXLMAYR,J.A.PARKER,J.D.KIEFER,R.KNIHTILA, JRNL AUTH 2 J.MCGEE,G.VERDINE,C.MATTOS,K.D.WITTRUP JRNL TITL AN ENGINEERED PROTEIN ANTAGONIST OF K-RAS/B-RAF INTERACTION. JRNL REF SCI REP V. 7 5831 2017 JRNL REFN ESSN 2045-2322 JRNL PMID 28724936 JRNL DOI 10.1038/S41598-017-05889-7 REMARK 2 REMARK 2 RESOLUTION. 2.30 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.8.4_1496 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.30 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 40.77 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 97.9 REMARK 3 NUMBER OF REFLECTIONS : 10687 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.190 REMARK 3 R VALUE (WORKING SET) : 0.184 REMARK 3 FREE R VALUE : 0.241 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 10.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1069 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 40.7783 - 4.6015 1.00 1320 147 0.1793 0.2157 REMARK 3 2 4.6015 - 3.6531 0.99 1227 136 0.1683 0.2110 REMARK 3 3 3.6531 - 3.1915 0.87 1084 120 0.1961 0.2211 REMARK 3 4 3.1915 - 2.8998 1.00 1199 134 0.1933 0.2654 REMARK 3 5 2.8998 - 2.6920 1.00 1208 135 0.1976 0.2987 REMARK 3 6 2.6920 - 2.5333 0.99 1190 132 0.1966 0.2868 REMARK 3 7 2.5333 - 2.4064 1.00 1209 134 0.1764 0.2458 REMARK 3 8 2.4064 - 2.3017 0.98 1181 131 0.1805 0.2788 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.250 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 23.750 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.008 1798 REMARK 3 ANGLE : 1.056 2438 REMARK 3 CHIRALITY : 0.042 270 REMARK 3 PLANARITY : 0.004 305 REMARK 3 DIHEDRAL : 15.402 650 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5UFE COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 12-JAN-17. REMARK 100 THE DEPOSITION ID IS D_1000225754. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 13-MAY-16 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : RIGAKU MICROMAX-007 HF REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.54 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : RIGAKU RAXIS IV++ REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-3000 REMARK 200 DATA SCALING SOFTWARE : HKL-3000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 10700 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.302 REMARK 200 RESOLUTION RANGE LOW (A) : 40.770 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.0 REMARK 200 DATA REDUNDANCY : 6.700 REMARK 200 R MERGE (I) : 0.12900 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 17.3100 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.30 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.38 REMARK 200 COMPLETENESS FOR SHELL (%) : 97.8 REMARK 200 DATA REDUNDANCY IN SHELL : 7.00 REMARK 200 R MERGE FOR SHELL (I) : 0.30480 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 6.050 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHENIX REMARK 200 STARTING MODEL: PDB ID 3GFT AND PDB ID 1SSO REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 45.18 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.24 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: CALCIUM CHLORIDE, CADMIUM CHLORIDE, REMARK 280 COBALT(II)CHLORIDE, PEG 3350, VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 291K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 24.35650 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 37.25300 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 32.32400 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 37.25300 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 24.35650 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 32.32400 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3490 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 10830 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -103.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 HIS B 7 REMARK 465 GLN B 8 REMARK 465 GLY B 37 REMARK 465 GLY B 38 REMARK 465 LYS B 59 REMARK 465 LYS B 60 REMARK 465 ARG B 61 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLN A 43 CG CD OE1 NE2 REMARK 470 LEU A 52 CG CD1 CD2 REMARK 470 GLU A 107 CG CD OE1 OE2 REMARK 470 HIS A 166 CG ND1 CD2 CE1 NE2 REMARK 470 LYS B 4 CG CD CE NZ REMARK 470 GLU B 10 CG CD OE1 OE2 REMARK 470 LYS B 12 CG CD CE NZ REMARK 470 GLN B 27 CG CD OE1 NE2 REMARK 470 GLU B 35 CG CD OE1 OE2 REMARK 470 ASP B 36 CG OD1 OD2 REMARK 470 LYS B 48 CG CD CE NZ REMARK 470 LYS B 52 CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 338 O HOH A 359 2.06 REMARK 500 NE ARG B 24 OE2 GLU B 47 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 CL CL A 210 O HOH A 329 4445 2.04 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LYS A 117 38.14 79.03 REMARK 500 ARG A 149 -0.62 76.99 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CO A 212 CO REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 3 O REMARK 620 2 GLU A 76 OE1 90.8 REMARK 620 3 GLU A 76 OE2 141.1 53.0 REMARK 620 4 HOH A 336 O 81.5 86.9 82.6 REMARK 620 5 HOH A 341 O 79.4 90.3 110.8 160.7 REMARK 620 6 GLU B 11 OE1 130.9 95.2 73.0 147.3 52.0 REMARK 620 7 GLU B 11 OE2 131.3 96.9 73.8 146.7 52.7 1.8 REMARK 620 N 1 2 3 4 5 6 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 211 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 SER A 17 OG REMARK 620 2 GNP A 201 O3G 168.2 REMARK 620 3 GNP A 201 O2B 90.6 99.2 REMARK 620 4 HOH A 305 O 91.3 82.4 88.3 REMARK 620 5 HOH A 319 O 82.1 87.1 168.1 82.6 REMARK 620 6 HOH A 326 O 85.7 98.9 100.7 170.6 88.1 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CO A 213 CO REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 27 NE2 REMARK 620 2 ASP A 105 OD2 18.5 REMARK 620 3 HOH A 304 O 72.3 62.0 REMARK 620 4 HOH A 331 O 110.4 123.9 167.3 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 202 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 31 OE2 REMARK 620 2 HOH A 306 O 77.0 REMARK 620 3 HOH A 317 O 91.9 72.1 REMARK 620 4 HOH A 365 O 92.6 161.5 93.3 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CD A 206 CD REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 33 OD1 REMARK 620 2 GNP A 201 O2G 124.4 REMARK 620 3 HOH A 368 O 86.1 89.4 REMARK 620 4 ALA B 1 N 65.5 92.0 23.5 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CD A 204 CD REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 37 OE2 REMARK 620 2 GLU A 62 OE1 89.7 REMARK 620 3 GLU A 62 OE2 124.4 50.0 REMARK 620 4 HOH A 367 O 136.4 95.0 89.8 REMARK 620 5 LYS B 32 NZ 82.5 157.2 118.9 105.5 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CD A 207 CD REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 91 OE1 REMARK 620 2 ASP A 154 OD1 20.0 REMARK 620 3 HOH A 356 O 108.1 121.9 REMARK 620 4 HOH A 371 O 102.7 85.3 101.5 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CD A 205 CD REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 94 NE2 REMARK 620 2 GLU A 98 OE1 93.8 REMARK 620 3 GLU A 98 OE2 89.7 50.9 REMARK 620 4 CYS A 118 SG 24.0 90.5 69.5 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CO A 214 CO REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 95 ND1 REMARK 620 2 GLU A 98 OE2 106.3 REMARK 620 3 GLU A 143 OE1 30.1 76.6 REMARK 620 4 HOH A 310 O 167.2 66.0 139.7 REMARK 620 5 HOH A 329 O 96.3 81.6 87.6 72.9 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 203 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 108 OD1 REMARK 620 2 ASP A 108 OD2 47.0 REMARK 620 3 HOH A 308 O 100.7 53.8 REMARK 620 4 HOH A 338 O 73.8 62.6 73.6 REMARK 620 5 HOH A 351 O 163.1 149.9 96.1 111.7 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA B 101 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH B 208 O REMARK 620 2 HOH B 213 O 82.1 REMARK 620 3 HOH B 215 O 112.6 58.5 REMARK 620 N 1 2 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GNP A 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CA A 202 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CA A 203 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CD A 204 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CD A 205 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CD A 206 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CD A 207 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CL A 208 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CL A 209 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CL A 210 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MG A 211 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CO A 212 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CO A 213 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CO A 214 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CA B 101 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 5UFQ RELATED DB: PDB DBREF 5UFE A 1 166 UNP P01116 RASK_HUMAN 1 166 DBREF 5UFE B 1 61 PDB 5UFE 5UFE 1 61 SEQRES 1 A 166 MET THR GLU TYR LYS LEU VAL VAL VAL GLY ALA GLY GLY SEQRES 2 A 166 VAL GLY LYS SER ALA LEU THR ILE GLN LEU ILE GLN ASN SEQRES 3 A 166 HIS PHE VAL ASP GLU TYR ASP PRO THR ILE GLU ASP SER SEQRES 4 A 166 TYR ARG LYS GLN VAL VAL ILE ASP GLY GLU THR CYS LEU SEQRES 5 A 166 LEU ASP ILE LEU ASP THR ALA GLY GLN GLU GLU TYR SER SEQRES 6 A 166 ALA MET ARG ASP GLN TYR MET ARG THR GLY GLU GLY PHE SEQRES 7 A 166 LEU CYS VAL PHE ALA ILE ASN ASN THR LYS SER PHE GLU SEQRES 8 A 166 ASP ILE HIS HIS TYR ARG GLU GLN ILE LYS ARG VAL LYS SEQRES 9 A 166 ASP SER GLU ASP VAL PRO MET VAL LEU VAL GLY ASN LYS SEQRES 10 A 166 CYS ASP LEU PRO SER ARG THR VAL ASP THR LYS GLN ALA SEQRES 11 A 166 GLN ASP LEU ALA ARG SER TYR GLY ILE PRO PHE ILE GLU SEQRES 12 A 166 THR SER ALA LYS THR ARG GLN GLY VAL ASP ASP ALA PHE SEQRES 13 A 166 TYR THR LEU VAL ARG GLU ILE ARG LYS HIS SEQRES 1 B 61 ALA THR VAL LYS PHE THR HIS GLN GLY GLU GLU LYS GLN SEQRES 2 B 61 VAL ASP ILE SER LYS ILE LYS TRP VAL ILE ARG TRP GLY SEQRES 3 B 61 GLN TYR ILE TRP PHE LYS TYR ASP GLU ASP GLY GLY ALA SEQRES 4 B 61 LYS GLY TRP GLY TYR VAL SER GLU LYS ASP ALA PRO LYS SEQRES 5 B 61 GLU LEU LEU GLN MET LEU LYS LYS ARG HET GNP A 201 32 HET CA A 202 1 HET CA A 203 1 HET CD A 204 1 HET CD A 205 1 HET CD A 206 1 HET CD A 207 1 HET CL A 208 1 HET CL A 209 1 HET CL A 210 1 HET MG A 211 1 HET CO A 212 1 HET CO A 213 1 HET CO A 214 1 HET CA B 101 1 HETNAM GNP PHOSPHOAMINOPHOSPHONIC ACID-GUANYLATE ESTER HETNAM CA CALCIUM ION HETNAM CD CADMIUM ION HETNAM CL CHLORIDE ION HETNAM MG MAGNESIUM ION HETNAM CO COBALT (II) ION FORMUL 3 GNP C10 H17 N6 O13 P3 FORMUL 4 CA 3(CA 2+) FORMUL 6 CD 4(CD 2+) FORMUL 10 CL 3(CL 1-) FORMUL 13 MG MG 2+ FORMUL 14 CO 3(CO 2+) FORMUL 18 HOH *95(H2 O) HELIX 1 AA1 GLY A 15 ASN A 26 1 12 HELIX 2 AA2 TYR A 64 GLY A 75 1 12 HELIX 3 AA3 ASN A 86 ASP A 105 1 20 HELIX 4 AA4 ASP A 126 GLY A 138 1 13 HELIX 5 AA5 GLY A 151 LYS A 165 1 15 HELIX 6 AA6 PRO B 51 MET B 57 1 7 SHEET 1 AA1 6 ASP A 38 ILE A 46 0 SHEET 2 AA1 6 GLU A 49 ASP A 57 -1 O ILE A 55 N TYR A 40 SHEET 3 AA1 6 GLU A 3 VAL A 9 1 N LEU A 6 O LEU A 56 SHEET 4 AA1 6 GLY A 77 ALA A 83 1 O VAL A 81 N VAL A 9 SHEET 5 AA1 6 MET A 111 ASN A 116 1 O VAL A 114 N PHE A 82 SHEET 6 AA1 6 PHE A 141 GLU A 143 1 O ILE A 142 N LEU A 113 SHEET 1 AA2 2 THR B 2 PHE B 5 0 SHEET 2 AA2 2 LYS B 12 ASP B 15 -1 O LYS B 12 N PHE B 5 SHEET 1 AA3 3 ILE B 19 TRP B 25 0 SHEET 2 AA3 3 TYR B 28 TYR B 33 -1 O TRP B 30 N ILE B 23 SHEET 3 AA3 3 GLY B 41 SER B 46 -1 O VAL B 45 N ILE B 29 LINK O GLU A 3 CO CO A 212 1555 1555 2.32 LINK OG SER A 17 MG MG A 211 1555 1555 2.02 LINK NE2 HIS A 27 CO CO A 213 1555 1555 1.80 LINK OE2 GLU A 31 CA CA A 202 1555 1555 2.28 LINK OD1 ASP A 33 CD CD A 206 1555 1555 2.48 LINK OE2 GLU A 37 CD CD A 204 1555 1555 2.63 LINK OE1 GLU A 62 CD CD A 204 1555 1555 2.55 LINK OE2 GLU A 62 CD CD A 204 1555 1555 2.64 LINK OE1 GLU A 76 CO CO A 212 1555 1555 2.67 LINK OE2 GLU A 76 CO CO A 212 1555 1555 2.20 LINK OE1 GLU A 91 CD CD A 207 1555 1555 2.56 LINK NE2 HIS A 94 CD CD A 205 1555 4445 2.59 LINK ND1 HIS A 95 CO CO A 214 1555 1555 2.24 LINK OE1 GLU A 98 CD CD A 205 1555 4445 2.55 LINK OE2 GLU A 98 CD CD A 205 1555 4445 2.60 LINK OE2 GLU A 98 CO CO A 214 1555 1555 2.25 LINK OD2 ASP A 105 CO CO A 213 1555 2454 2.48 LINK OD1 ASP A 108 CA CA A 203 1555 1555 2.37 LINK OD2 ASP A 108 CA CA A 203 1555 1555 2.95 LINK SG CYS A 118 CD CD A 205 1555 1555 2.68 LINK OE1 GLU A 143 CO CO A 214 1555 4545 2.09 LINK OD1 ASP A 154 CD CD A 207 1555 4545 2.52 LINK O2G GNP A 201 CD CD A 206 1555 1555 2.46 LINK O3G GNP A 201 MG MG A 211 1555 1555 1.78 LINK O2B GNP A 201 MG MG A 211 1555 1555 2.08 LINK CA CA A 202 O HOH A 306 1555 1555 2.32 LINK CA CA A 202 O HOH A 317 1555 1555 2.20 LINK CA CA A 202 O HOH A 365 1555 1555 2.46 LINK CA CA A 203 O HOH A 308 1555 1555 2.24 LINK CA CA A 203 O HOH A 338 1555 1555 2.40 LINK CA CA A 203 O HOH A 351 1555 1555 2.70 LINK CD CD A 204 O HOH A 367 1555 1555 2.63 LINK CD CD A 204 NZ LYS B 32 1555 1555 2.69 LINK CD CD A 206 O HOH A 368 1555 1555 2.64 LINK CD CD A 206 N ALA B 1 3455 1555 2.68 LINK CD CD A 207 O HOH A 356 1555 1555 2.62 LINK CD CD A 207 O HOH A 371 1555 1555 2.62 LINK MG MG A 211 O HOH A 305 1555 1555 1.82 LINK MG MG A 211 O HOH A 319 1555 1555 2.04 LINK MG MG A 211 O HOH A 326 1555 1555 2.07 LINK CO CO A 212 O HOH A 336 1555 1555 2.07 LINK CO CO A 212 O HOH A 341 1555 1555 2.14 LINK CO CO A 212 OE1 GLU B 11 4455 1555 2.50 LINK CO CO A 212 OE2 GLU B 11 4455 1555 2.58 LINK CO CO A 213 O HOH A 304 1555 1555 2.15 LINK CO CO A 213 O HOH A 331 1555 2455 2.09 LINK CO CO A 214 O HOH A 310 1555 1555 2.27 LINK CO CO A 214 O HOH A 329 1555 4445 1.99 LINK CA CA B 101 O HOH B 208 1555 1555 2.70 LINK CA CA B 101 O HOH B 213 1555 1555 2.64 LINK CA CA B 101 O HOH B 215 1555 1555 2.36 SITE 1 AC1 31 GLY A 13 VAL A 14 GLY A 15 LYS A 16 SITE 2 AC1 31 SER A 17 ALA A 18 GLY A 60 ASN A 116 SITE 3 AC1 31 LYS A 117 ASP A 119 LEU A 120 SER A 145 SITE 4 AC1 31 ALA A 146 LYS A 147 CD A 206 CL A 208 SITE 5 AC1 31 MG A 211 HOH A 302 HOH A 305 HOH A 316 SITE 6 AC1 31 HOH A 317 HOH A 319 HOH A 320 HOH A 326 SITE 7 AC1 31 HOH A 328 HOH A 330 HOH A 334 HOH A 350 SITE 8 AC1 31 ASP B 15 LYS B 18 HOH B 203 SITE 1 AC2 5 GLU A 31 CL A 208 HOH A 306 HOH A 317 SITE 2 AC2 5 HOH A 365 SITE 1 AC3 4 ASP A 108 HOH A 308 HOH A 338 HOH A 351 SITE 1 AC4 4 GLU A 37 GLU A 62 HOH A 367 LYS B 32 SITE 1 AC5 5 HIS A 94 GLU A 98 CYS A 118 CL A 209 SITE 2 AC5 5 CO A 214 SITE 1 AC6 5 ASP A 33 GNP A 201 HOH A 368 ALA B 1 SITE 2 AC6 5 HOH B 203 SITE 1 AC7 4 GLU A 91 ASP A 154 HOH A 356 HOH A 371 SITE 1 AC8 4 GNP A 201 CA A 202 ASP B 15 LYS B 18 SITE 1 AC9 3 ASP A 119 THR A 148 CD A 205 SITE 1 AD1 5 HIS A 95 ARG A 123 GLU A 143 CO A 214 SITE 2 AD1 5 HOH A 329 SITE 1 AD2 5 SER A 17 GNP A 201 HOH A 305 HOH A 319 SITE 2 AD2 5 HOH A 326 SITE 1 AD3 6 GLU A 3 GLU A 76 HOH A 336 HOH A 341 SITE 2 AD3 6 GLU B 11 HOH B 201 SITE 1 AD4 4 HIS A 27 ASP A 105 HOH A 304 HOH A 331 SITE 1 AD5 8 HIS A 95 GLU A 98 CYS A 118 GLU A 143 SITE 2 AD5 8 CD A 205 CL A 210 HOH A 310 HOH A 329 SITE 1 AD6 3 HOH B 208 HOH B 213 HOH B 215 CRYST1 48.713 64.648 74.506 90.00 90.00 90.00 P 21 21 21 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.020528 0.000000 0.000000 0.00000 SCALE2 0.000000 0.015468 0.000000 0.00000 SCALE3 0.000000 0.000000 0.013422 0.00000