HEADER HYDROLASE/DE NOVO PROTEIN 05-JAN-17 5UFQ TITLE K-RASG12D(GNP)/R11.1.6 COMPLEX COMPND MOL_ID: 1; COMPND 2 MOLECULE: GTPASE KRAS; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: UNP RESIDUES 1-166; COMPND 5 SYNONYM: K-RAS 2,KI-RAS,C-K-RAS,C-KI-RAS; COMPND 6 ENGINEERED: YES; COMPND 7 MUTATION: YES; COMPND 8 MOL_ID: 2; COMPND 9 MOLECULE: R11.1.6; COMPND 10 CHAIN: C, D; COMPND 11 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: KRAS, KRAS2, RASK2; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 MOL_ID: 2; SOURCE 9 ORGANISM_SCIENTIFIC: SULFOLOBUS SOLFATARICUS; SOURCE 10 ORGANISM_TAXID: 2287; SOURCE 11 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 12 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS RAS, GTPASE, COMPLEX, INHIBITOR, HYDROLASE-DE NOVO PROTEIN COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR J.A.PARKER,C.MATTOS REVDAT 3 04-OCT-23 5UFQ 1 LINK REVDAT 2 27-NOV-19 5UFQ 1 REMARK REVDAT 1 02-AUG-17 5UFQ 0 JRNL AUTH M.J.KAUKE,M.W.TRAXLMAYR,J.A.PARKER,J.D.KIEFER,R.KNIHTILA, JRNL AUTH 2 J.MCGEE,G.VERDINE,C.MATTOS,K.D.WITTRUP JRNL TITL AN ENGINEERED PROTEIN ANTAGONIST OF K-RAS/B-RAF INTERACTION. JRNL REF SCI REP V. 7 5831 2017 JRNL REFN ESSN 2045-2322 JRNL PMID 28724936 JRNL DOI 10.1038/S41598-017-05889-7 REMARK 2 REMARK 2 RESOLUTION. 2.20 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.8.4_1496 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.20 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 45.17 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.370 REMARK 3 COMPLETENESS FOR RANGE (%) : 97.6 REMARK 3 NUMBER OF REFLECTIONS : 23486 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.206 REMARK 3 R VALUE (WORKING SET) : 0.200 REMARK 3 FREE R VALUE : 0.263 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 8.500 REMARK 3 FREE R VALUE TEST SET COUNT : 1996 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 45.1740 - 5.2975 0.99 1639 151 0.1783 0.2365 REMARK 3 2 5.2975 - 4.2058 0.99 1571 146 0.1560 0.1984 REMARK 3 3 4.2058 - 3.6744 0.99 1576 147 0.1661 0.2210 REMARK 3 4 3.6744 - 3.3386 0.99 1555 144 0.2002 0.2882 REMARK 3 5 3.3386 - 3.0993 0.99 1563 146 0.2230 0.2614 REMARK 3 6 3.0993 - 2.9166 0.98 1525 141 0.2270 0.3182 REMARK 3 7 2.9166 - 2.7706 0.98 1546 145 0.2425 0.3529 REMARK 3 8 2.7706 - 2.6500 0.98 1511 140 0.2476 0.2952 REMARK 3 9 2.6500 - 2.5480 0.97 1523 142 0.2369 0.2768 REMARK 3 10 2.5480 - 2.4601 0.97 1546 143 0.2356 0.3236 REMARK 3 11 2.4601 - 2.3832 0.97 1492 139 0.2313 0.2527 REMARK 3 12 2.3832 - 2.3150 0.97 1525 142 0.2352 0.3360 REMARK 3 13 2.3150 - 2.2541 0.96 1470 138 0.2462 0.3091 REMARK 3 14 2.2541 - 2.1991 0.92 1448 132 0.2336 0.3127 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.270 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 32.440 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.009 3644 REMARK 3 ANGLE : 1.152 4948 REMARK 3 CHIRALITY : 0.044 549 REMARK 3 PLANARITY : 0.005 621 REMARK 3 DIHEDRAL : 15.108 1314 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5UFQ COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 12-JAN-17. REMARK 100 THE DEPOSITION ID IS D_1000225752. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 29-JAN-16 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : RIGAKU MICROMAX-007 HF REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.54 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : RIGAKU RAXIS IV++ REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-3000 REMARK 200 DATA SCALING SOFTWARE : HKL-3000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 23511 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.199 REMARK 200 RESOLUTION RANGE LOW (A) : 45.174 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 97.7 REMARK 200 DATA REDUNDANCY : 7.300 REMARK 200 R MERGE (I) : 0.10160 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 21.8300 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.20 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.28 REMARK 200 COMPLETENESS FOR SHELL (%) : 93.5 REMARK 200 DATA REDUNDANCY IN SHELL : 6.50 REMARK 200 R MERGE FOR SHELL (I) : 0.35210 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 4.500 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHENIX 1.8.4_1496 REMARK 200 STARTING MODEL: PDB ID 3GFT AND PDB ID 1SSO REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 45.21 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.25 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: CALCIUM CHLORIDE, CADMIUM CHLORIDE, REMARK 280 COBALT(II) CHLORIDE HEXAHYDRATE, PEG 3350, VAPOR DIFFUSION, REMARK 280 HANGING DROP, TEMPERATURE 291K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 59.85850 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 21.35350 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 59.85850 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 21.35350 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2, 3 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1550 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 10910 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -7.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 3 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1530 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 10940 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -9.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 APPLY THE FOLLOWING TO CHAINS: D REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 -39.69570 REMARK 350 BIOMT2 2 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 92.03970 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 HIS C 7 REMARK 465 GLN C 8 REMARK 465 ASP C 36 REMARK 465 ALA C 39 REMARK 465 ARG C 61 REMARK 465 HIS D 7 REMARK 465 GLN D 8 REMARK 465 GLY D 9 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLU A 49 CG CD OE1 OE2 REMARK 470 GLU A 91 CG CD OE1 OE2 REMARK 470 LYS A 101 CG CD CE NZ REMARK 470 ARG A 102 CG CD NE CZ NH1 NH2 REMARK 470 ASP A 108 CG OD1 OD2 REMARK 470 LYS A 128 CG CD CE NZ REMARK 470 GLU B 49 CG CD OE1 OE2 REMARK 470 GLN B 61 CG CD OE1 NE2 REMARK 470 LYS B 88 CG CD CE NZ REMARK 470 GLU B 91 CG CD OE1 OE2 REMARK 470 GLU B 98 CG CD OE1 OE2 REMARK 470 LYS B 101 CG CD CE NZ REMARK 470 ARG B 102 CG CD NE CZ NH1 NH2 REMARK 470 ASP B 108 CG OD1 OD2 REMARK 470 LYS B 128 CG CD CE NZ REMARK 470 LYS C 4 CG CD CE NZ REMARK 470 GLU C 10 CG CD OE1 OE2 REMARK 470 GLU C 11 CG CD OE1 OE2 REMARK 470 GLU C 35 CG CD OE1 OE2 REMARK 470 LYS C 48 CG CD CE NZ REMARK 470 LYS C 52 CG CD CE NZ REMARK 470 LYS C 60 CG CD CE NZ REMARK 470 LYS D 4 CG CD CE NZ REMARK 470 GLU D 11 CG CD OE1 OE2 REMARK 470 LYS D 48 CG CD CE NZ REMARK 470 LYS D 52 CG CD CE NZ REMARK 470 ARG D 61 CG CD NE CZ NH1 NH2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 320 O HOH A 340 2.03 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ARG A 149 -1.25 73.07 REMARK 500 HIS B 95 -67.04 -26.80 REMARK 500 ASP B 108 73.23 -105.94 REMARK 500 LYS B 117 30.09 70.57 REMARK 500 GLU C 10 -165.93 -110.70 REMARK 500 ASP C 49 41.13 -101.60 REMARK 500 GLN D 27 -1.18 81.07 REMARK 500 GLU D 35 117.20 -37.90 REMARK 500 ASP D 49 32.63 -91.34 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 HIS B 94 HIS B 95 149.98 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 205 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 3 O REMARK 620 2 GLU A 76 OE1 121.8 REMARK 620 3 GLU A 76 OE2 77.1 45.3 REMARK 620 4 GLU A 107 OE1 106.7 17.0 33.8 REMARK 620 5 GLU A 107 OE2 112.2 13.1 39.3 5.7 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 202 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 SER A 17 OG REMARK 620 2 THR A 35 O 82.8 REMARK 620 3 THR A 35 OG1 84.7 77.6 REMARK 620 4 GNP A 201 O1G 175.6 93.1 95.9 REMARK 620 5 GNP A 201 O2B 91.8 163.3 86.2 92.6 REMARK 620 6 HOH A 308 O 88.9 102.4 173.5 90.6 93.2 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CD A 206 CD REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 30 OD1 REMARK 620 2 ASP A 30 OD2 50.3 REMARK 620 3 ASP A 33 OD1 108.2 86.8 REMARK 620 4 GLU A 63 OE1 100.9 67.5 22.0 REMARK 620 5 GLU A 63 OE2 102.1 66.1 25.1 3.9 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA B 204 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU B 3 O REMARK 620 2 GLU B 76 OE1 119.8 REMARK 620 3 GLU B 76 OE2 78.7 43.7 REMARK 620 4 GLU B 107 OE2 99.6 20.3 27.9 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG B 202 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 SER B 17 OG REMARK 620 2 THR B 35 O 82.0 REMARK 620 3 THR B 35 OG1 86.1 79.4 REMARK 620 4 GNP B 201 O1G 173.6 98.8 100.3 REMARK 620 5 GNP B 201 O2B 88.9 164.3 87.2 91.6 REMARK 620 6 HOH B 309 O 82.7 102.2 168.3 91.0 89.3 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CD B 205 CD REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP B 30 OD1 REMARK 620 2 ASP B 30 OD2 51.4 REMARK 620 3 ASP B 33 OD1 81.2 108.7 REMARK 620 4 GLU B 63 OE1 64.6 103.6 20.5 REMARK 620 5 GLU B 63 OE2 63.2 104.4 23.9 3.8 REMARK 620 N 1 2 3 4 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GNP A 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MG A 202 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CL A 203 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CL A 204 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CA A 205 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CD A 206 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GNP B 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MG B 202 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CL B 203 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CA B 204 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CD B 205 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CL D 101 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 5UFE RELATED DB: PDB DBREF 5UFQ A 1 166 UNP P01116 RASK_HUMAN 1 166 DBREF 5UFQ B 1 166 UNP P01116 RASK_HUMAN 1 166 DBREF 5UFQ C 1 61 PDB 5UFQ 5UFQ 1 61 DBREF 5UFQ D 1 61 PDB 5UFQ 5UFQ 1 61 SEQADV 5UFQ ASP A 12 UNP P01116 GLY 12 ENGINEERED MUTATION SEQADV 5UFQ ASP B 12 UNP P01116 GLY 12 ENGINEERED MUTATION SEQRES 1 A 166 MET THR GLU TYR LYS LEU VAL VAL VAL GLY ALA ASP GLY SEQRES 2 A 166 VAL GLY LYS SER ALA LEU THR ILE GLN LEU ILE GLN ASN SEQRES 3 A 166 HIS PHE VAL ASP GLU TYR ASP PRO THR ILE GLU ASP SER SEQRES 4 A 166 TYR ARG LYS GLN VAL VAL ILE ASP GLY GLU THR CYS LEU SEQRES 5 A 166 LEU ASP ILE LEU ASP THR ALA GLY GLN GLU GLU TYR SER SEQRES 6 A 166 ALA MET ARG ASP GLN TYR MET ARG THR GLY GLU GLY PHE SEQRES 7 A 166 LEU CYS VAL PHE ALA ILE ASN ASN THR LYS SER PHE GLU SEQRES 8 A 166 ASP ILE HIS HIS TYR ARG GLU GLN ILE LYS ARG VAL LYS SEQRES 9 A 166 ASP SER GLU ASP VAL PRO MET VAL LEU VAL GLY ASN LYS SEQRES 10 A 166 CYS ASP LEU PRO SER ARG THR VAL ASP THR LYS GLN ALA SEQRES 11 A 166 GLN ASP LEU ALA ARG SER TYR GLY ILE PRO PHE ILE GLU SEQRES 12 A 166 THR SER ALA LYS THR ARG GLN GLY VAL ASP ASP ALA PHE SEQRES 13 A 166 TYR THR LEU VAL ARG GLU ILE ARG LYS HIS SEQRES 1 B 166 MET THR GLU TYR LYS LEU VAL VAL VAL GLY ALA ASP GLY SEQRES 2 B 166 VAL GLY LYS SER ALA LEU THR ILE GLN LEU ILE GLN ASN SEQRES 3 B 166 HIS PHE VAL ASP GLU TYR ASP PRO THR ILE GLU ASP SER SEQRES 4 B 166 TYR ARG LYS GLN VAL VAL ILE ASP GLY GLU THR CYS LEU SEQRES 5 B 166 LEU ASP ILE LEU ASP THR ALA GLY GLN GLU GLU TYR SER SEQRES 6 B 166 ALA MET ARG ASP GLN TYR MET ARG THR GLY GLU GLY PHE SEQRES 7 B 166 LEU CYS VAL PHE ALA ILE ASN ASN THR LYS SER PHE GLU SEQRES 8 B 166 ASP ILE HIS HIS TYR ARG GLU GLN ILE LYS ARG VAL LYS SEQRES 9 B 166 ASP SER GLU ASP VAL PRO MET VAL LEU VAL GLY ASN LYS SEQRES 10 B 166 CYS ASP LEU PRO SER ARG THR VAL ASP THR LYS GLN ALA SEQRES 11 B 166 GLN ASP LEU ALA ARG SER TYR GLY ILE PRO PHE ILE GLU SEQRES 12 B 166 THR SER ALA LYS THR ARG GLN GLY VAL ASP ASP ALA PHE SEQRES 13 B 166 TYR THR LEU VAL ARG GLU ILE ARG LYS HIS SEQRES 1 C 61 ALA THR VAL LYS PHE THR HIS GLN GLY GLU GLU LYS GLN SEQRES 2 C 61 VAL ASP ILE SER LYS ILE LYS TRP VAL ILE ARG TRP GLY SEQRES 3 C 61 GLN TYR ILE TRP PHE LYS TYR ASP GLU ASP GLY GLY ALA SEQRES 4 C 61 LYS GLY TRP GLY TYR VAL SER GLU LYS ASP ALA PRO LYS SEQRES 5 C 61 GLU LEU LEU GLN MET LEU LYS LYS ARG SEQRES 1 D 61 ALA THR VAL LYS PHE THR HIS GLN GLY GLU GLU LYS GLN SEQRES 2 D 61 VAL ASP ILE SER LYS ILE LYS TRP VAL ILE ARG TRP GLY SEQRES 3 D 61 GLN TYR ILE TRP PHE LYS TYR ASP GLU ASP GLY GLY ALA SEQRES 4 D 61 LYS GLY TRP GLY TYR VAL SER GLU LYS ASP ALA PRO LYS SEQRES 5 D 61 GLU LEU LEU GLN MET LEU LYS LYS ARG HET GNP A 201 32 HET MG A 202 1 HET CL A 203 1 HET CL A 204 1 HET CA A 205 1 HET CD A 206 1 HET GNP B 201 32 HET MG B 202 1 HET CL B 203 1 HET CA B 204 1 HET CD B 205 1 HET CL D 101 1 HETNAM GNP PHOSPHOAMINOPHOSPHONIC ACID-GUANYLATE ESTER HETNAM MG MAGNESIUM ION HETNAM CL CHLORIDE ION HETNAM CA CALCIUM ION HETNAM CD CADMIUM ION FORMUL 5 GNP 2(C10 H17 N6 O13 P3) FORMUL 6 MG 2(MG 2+) FORMUL 7 CL 4(CL 1-) FORMUL 9 CA 2(CA 2+) FORMUL 10 CD 2(CD 2+) FORMUL 17 HOH *114(H2 O) HELIX 1 AA1 GLY A 15 ASN A 26 1 12 HELIX 2 AA2 TYR A 64 GLY A 75 1 12 HELIX 3 AA3 ASN A 86 ASP A 105 1 20 HELIX 4 AA4 ASP A 126 GLY A 138 1 13 HELIX 5 AA5 GLY A 151 LYS A 165 1 15 HELIX 6 AA6 GLY B 15 ASN B 26 1 12 HELIX 7 AA7 TYR B 64 GLY B 75 1 12 HELIX 8 AA8 ASN B 86 ASP B 105 1 20 HELIX 9 AA9 ASP B 126 GLY B 138 1 13 HELIX 10 AB1 GLY B 151 LYS B 165 1 15 HELIX 11 AB2 LYS C 48 ALA C 50 5 3 HELIX 12 AB3 PRO C 51 GLN C 56 1 6 HELIX 13 AB4 PRO D 51 GLN D 56 1 6 SHEET 1 AA1 6 ASP A 38 ILE A 46 0 SHEET 2 AA1 6 GLU A 49 ASP A 57 -1 O ILE A 55 N TYR A 40 SHEET 3 AA1 6 GLU A 3 VAL A 9 1 N TYR A 4 O LEU A 52 SHEET 4 AA1 6 GLY A 77 ALA A 83 1 O VAL A 81 N VAL A 9 SHEET 5 AA1 6 MET A 111 ASN A 116 1 O ASN A 116 N PHE A 82 SHEET 6 AA1 6 PHE A 141 GLU A 143 1 O ILE A 142 N LEU A 113 SHEET 1 AA2 6 ASP B 38 ILE B 46 0 SHEET 2 AA2 6 GLU B 49 ASP B 57 -1 O LEU B 53 N LYS B 42 SHEET 3 AA2 6 GLU B 3 VAL B 9 1 N LEU B 6 O LEU B 56 SHEET 4 AA2 6 GLY B 77 ALA B 83 1 O VAL B 81 N VAL B 9 SHEET 5 AA2 6 MET B 111 ASN B 116 1 O ASN B 116 N PHE B 82 SHEET 6 AA2 6 PHE B 141 GLU B 143 1 O ILE B 142 N LEU B 113 SHEET 1 AA3 2 THR C 2 PHE C 5 0 SHEET 2 AA3 2 LYS C 12 ASP C 15 -1 O LYS C 12 N PHE C 5 SHEET 1 AA4 3 ILE C 19 TRP C 25 0 SHEET 2 AA4 3 TYR C 28 ASP C 34 -1 O TRP C 30 N ILE C 23 SHEET 3 AA4 3 GLY C 41 SER C 46 -1 O GLY C 43 N PHE C 31 SHEET 1 AA5 2 THR D 2 PHE D 5 0 SHEET 2 AA5 2 LYS D 12 ASP D 15 -1 O LYS D 12 N PHE D 5 SHEET 1 AA6 3 ILE D 19 TRP D 25 0 SHEET 2 AA6 3 TYR D 28 ASP D 36 -1 O TRP D 30 N ILE D 23 SHEET 3 AA6 3 ALA D 39 SER D 46 -1 O VAL D 45 N ILE D 29 LINK O GLU A 3 CA CA A 205 1555 1555 2.25 LINK OG SER A 17 MG MG A 202 1555 1555 2.25 LINK OD1 ASP A 30 CD CD A 206 1555 1555 2.51 LINK OD2 ASP A 30 CD CD A 206 1555 1555 2.61 LINK OD1 ASP A 33 CD CD A 206 1555 1555 2.42 LINK O THR A 35 MG MG A 202 1555 1555 2.21 LINK OG1 THR A 35 MG MG A 202 1555 1555 1.96 LINK OE1 GLU A 63 CD CD A 206 1555 2555 2.56 LINK OE2 GLU A 63 CD CD A 206 1555 2555 2.56 LINK OE1 GLU A 76 CA CA A 205 1555 1555 2.43 LINK OE2 GLU A 76 CA CA A 205 1555 1555 3.07 LINK OE1 GLU A 107 CA CA A 205 1555 4555 2.48 LINK OE2 GLU A 107 CA CA A 205 1555 4555 3.10 LINK O1G GNP A 201 MG MG A 202 1555 1555 1.90 LINK O2B GNP A 201 MG MG A 202 1555 1555 2.04 LINK MG MG A 202 O HOH A 308 1555 1555 2.23 LINK O GLU B 3 CA CA B 204 1555 1555 2.29 LINK OG SER B 17 MG MG B 202 1555 1555 2.28 LINK OD1 ASP B 30 CD CD B 205 1555 1555 2.56 LINK OD2 ASP B 30 CD CD B 205 1555 1555 2.52 LINK OD1 ASP B 33 CD CD B 205 1555 1555 2.38 LINK O THR B 35 MG MG B 202 1555 1555 2.24 LINK OG1 THR B 35 MG MG B 202 1555 1555 1.93 LINK OE1 GLU B 63 CD CD B 205 1555 2556 2.53 LINK OE2 GLU B 63 CD CD B 205 1555 2556 2.54 LINK OE1 GLU B 76 CA CA B 204 1555 1555 2.66 LINK OE2 GLU B 76 CA CA B 204 1555 1555 3.13 LINK OE2 GLU B 107 CA CA B 204 1555 4556 2.38 LINK O1G GNP B 201 MG MG B 202 1555 1555 1.80 LINK O2B GNP B 201 MG MG B 202 1555 1555 2.06 LINK MG MG B 202 O HOH B 309 1555 1555 2.17 CISPEP 1 LYS D 60 ARG D 61 0 -3.13 SITE 1 AC1 25 ASP A 12 GLY A 13 VAL A 14 GLY A 15 SITE 2 AC1 25 LYS A 16 SER A 17 ALA A 18 PHE A 28 SITE 3 AC1 25 VAL A 29 ASP A 30 GLU A 31 THR A 35 SITE 4 AC1 25 GLY A 60 ASN A 116 LYS A 117 ASP A 119 SITE 5 AC1 25 LEU A 120 SER A 145 ALA A 146 LYS A 147 SITE 6 AC1 25 MG A 202 HOH A 308 HOH A 325 HOH A 329 SITE 7 AC1 25 HOH A 336 SITE 1 AC2 4 SER A 17 THR A 35 GNP A 201 HOH A 308 SITE 1 AC3 4 GLU A 3 GLU A 76 GLU A 107 CA A 205 SITE 1 AC4 3 TYR A 64 CD A 206 LYS C 20 SITE 1 AC5 5 GLU A 3 LYS A 5 GLU A 76 GLU A 107 SITE 2 AC5 5 CL A 203 SITE 1 AC6 4 ASP A 30 ASP A 33 GLU A 63 CL A 204 SITE 1 AC7 28 ASP B 12 GLY B 13 VAL B 14 GLY B 15 SITE 2 AC7 28 LYS B 16 SER B 17 ALA B 18 PHE B 28 SITE 3 AC7 28 VAL B 29 ASP B 30 GLU B 31 THR B 35 SITE 4 AC7 28 GLY B 60 ASN B 116 LYS B 117 ASP B 119 SITE 5 AC7 28 LEU B 120 SER B 145 ALA B 146 LYS B 147 SITE 6 AC7 28 MG B 202 HOH B 309 HOH B 318 HOH B 319 SITE 7 AC7 28 HOH B 320 HOH B 322 HOH B 328 HOH B 331 SITE 1 AC8 4 SER B 17 THR B 35 GNP B 201 HOH B 309 SITE 1 AC9 4 GLU B 3 GLU B 76 GLU B 107 CA B 204 SITE 1 AD1 5 GLU B 3 LYS B 5 GLU B 76 GLU B 107 SITE 2 AD1 5 CL B 203 SITE 1 AD2 4 ASP B 30 ASP B 33 GLU B 63 CL D 101 SITE 1 AD3 3 TYR B 64 CD B 205 LYS D 20 CRYST1 119.717 42.707 100.235 90.00 113.33 90.00 C 1 2 1 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.008353 0.000000 0.003603 0.00000 SCALE2 0.000000 0.023415 0.000000 0.00000 SCALE3 0.000000 0.000000 0.010865 0.00000