HEADER VIRAL PROTEIN/IMMUNE SYSTEM 06-JAN-17 5UG0 TITLE HUMAN ANTIBODY H2897 IN COMPLEX WITH INFLUENZA HEMAGGLUTININ H1 TITLE 2 SOLOMON ISLANDS/03/2006 COMPND MOL_ID: 1; COMPND 2 MOLECULE: HEMAGGLUTININ HA1; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: UNP RESIDUES 18-343; COMPND 5 ENGINEERED: YES; COMPND 6 MOL_ID: 2; COMPND 7 MOLECULE: HEMAGGLUTININ HA2; COMPND 8 CHAIN: B; COMPND 9 FRAGMENT: UNP RESIDUES 344-519; COMPND 10 ENGINEERED: YES; COMPND 11 MOL_ID: 3; COMPND 12 MOLECULE: 2897 LIGHT CHAIN; COMPND 13 CHAIN: C; COMPND 14 ENGINEERED: YES; COMPND 15 MOL_ID: 4; COMPND 16 MOLECULE: 2897 HEAVY CHAIN; COMPND 17 CHAIN: D; COMPND 18 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: INFLUENZA A VIRUS (A/SOLOMON SOURCE 3 ISLANDS/3/2006(H1N1)); SOURCE 4 ORGANISM_TAXID: 464623; SOURCE 5 STRAIN: A/SOLOMON ISLANDS/3/2006(H1N1); SOURCE 6 GENE: HA; SOURCE 7 EXPRESSION_SYSTEM: TRICHOPLUSIA NI; SOURCE 8 EXPRESSION_SYSTEM_COMMON: CABBAGE LOOPER; SOURCE 9 EXPRESSION_SYSTEM_TAXID: 7111; SOURCE 10 MOL_ID: 2; SOURCE 11 ORGANISM_SCIENTIFIC: INFLUENZA A VIRUS (A/SOLOMON SOURCE 12 ISLANDS/3/2006(H1N1)); SOURCE 13 ORGANISM_TAXID: 464623; SOURCE 14 STRAIN: A/SOLOMON ISLANDS/3/2006(H1N1); SOURCE 15 GENE: HA; SOURCE 16 EXPRESSION_SYSTEM: TRICHOPLUSIA NI; SOURCE 17 EXPRESSION_SYSTEM_COMMON: CABBAGE LOOPER; SOURCE 18 EXPRESSION_SYSTEM_TAXID: 7111; SOURCE 19 MOL_ID: 3; SOURCE 20 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 21 ORGANISM_COMMON: HUMAN; SOURCE 22 ORGANISM_TAXID: 9606; SOURCE 23 GENE: IGK@; SOURCE 24 EXPRESSION_SYSTEM: HOMO SAPIENS; SOURCE 25 EXPRESSION_SYSTEM_COMMON: HUMAN; SOURCE 26 EXPRESSION_SYSTEM_TAXID: 9606; SOURCE 27 MOL_ID: 4; SOURCE 28 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 29 ORGANISM_COMMON: HUMAN; SOURCE 30 ORGANISM_TAXID: 9606; SOURCE 31 GENE: DKFZP686P15220; SOURCE 32 EXPRESSION_SYSTEM: HOMO SAPIENS; SOURCE 33 EXPRESSION_SYSTEM_COMMON: HUMAN; SOURCE 34 EXPRESSION_SYSTEM_TAXID: 9606 KEYWDS INFLUENZA HA, ANTIBODY, COMPLEX, VIRAL PROTEIN-IMMUNE SYSTEM COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR D.D.RAYMOND,T.CARADONNA,A.G.SCHMIDT,S.C.HARRISON REVDAT 5 06-NOV-24 5UG0 1 REMARK REVDAT 4 04-OCT-23 5UG0 1 HETSYN REVDAT 3 29-JUL-20 5UG0 1 COMPND REMARK HETNAM LINK REVDAT 3 2 1 SITE ATOM REVDAT 2 21-JUN-17 5UG0 1 JRNL REVDAT 1 31-MAY-17 5UG0 0 JRNL AUTH Y.LIU,J.PAN,S.JENNI,D.D.RAYMOND,T.CARADONNA,K.T.DO, JRNL AUTH 2 A.G.SCHMIDT,S.C.HARRISON,N.GRIGORIEFF JRNL TITL CRYOEM STRUCTURE OF AN INFLUENZA VIRUS RECEPTOR-BINDING SITE JRNL TITL 2 ANTIBODY-ANTIGEN INTERFACE. JRNL REF J. MOL. BIOL. V. 429 1829 2017 JRNL REFN ESSN 1089-8638 JRNL PMID 28506635 JRNL DOI 10.1016/J.JMB.2017.05.011 REMARK 2 REMARK 2 RESOLUTION. 3.40 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : BUSTER 2.10.2 REMARK 3 AUTHORS : BRICOGNE,BLANC,BRANDL,FLENSBURG,KELLER, REMARK 3 : PACIOREK,ROVERSI,SHARFF,SMART,VONRHEIN, REMARK 3 : WOMACK,MATTHEWS,TEN EYCK,TRONRUD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 3.40 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 46.41 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 98.6 REMARK 3 NUMBER OF REFLECTIONS : 32418 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.242 REMARK 3 R VALUE (WORKING SET) : 0.240 REMARK 3 FREE R VALUE : 0.278 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1621 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : 0.000 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 16 REMARK 3 BIN RESOLUTION RANGE HIGH (ANGSTROMS) : 3.40 REMARK 3 BIN RESOLUTION RANGE LOW (ANGSTROMS) : 3.51 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 95.23 REMARK 3 REFLECTIONS IN BIN (WORKING + TEST SET) : 2854 REMARK 3 BIN R VALUE (WORKING + TEST SET) : 0.3140 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 2711 REMARK 3 BIN R VALUE (WORKING SET) : 0.3130 REMARK 3 BIN FREE R VALUE : 0.3340 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 5.01 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 143 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : 0.000 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 7240 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 176 REMARK 3 SOLVENT ATOMS : 0 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 116.3 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 158.4 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -36.07060 REMARK 3 B22 (A**2) : -36.07060 REMARK 3 B33 (A**2) : 72.14120 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.870 REMARK 3 DPI (BLOW EQ-10) BASED ON R VALUE (A) : 1.218 REMARK 3 DPI (BLOW EQ-9) BASED ON FREE R VALUE (A) : 0.442 REMARK 3 DPI (CRUICKSHANK) BASED ON R VALUE (A) : 1.344 REMARK 3 DPI (CRUICKSHANK) BASED ON FREE R VALUE (A) : 0.453 REMARK 3 REMARK 3 REFERENCES: BLOW, D. (2002) ACTA CRYST D58, 792-797 REMARK 3 CRUICKSHANK, D.W.J. (1999) ACTA CRYST D55, 583-601 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.865 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.848 REMARK 3 REMARK 3 NUMBER OF GEOMETRIC FUNCTION TERMS DEFINED : 15 REMARK 3 TERM COUNT WEIGHT FUNCTION. REMARK 3 BOND LENGTHS : 7610 ; 2.000 ; HARMONIC REMARK 3 BOND ANGLES : 10360 ; 2.000 ; HARMONIC REMARK 3 TORSION ANGLES : 2611 ; 2.000 ; SINUSOIDAL REMARK 3 TRIGONAL CARBON PLANES : 185 ; 2.000 ; HARMONIC REMARK 3 GENERAL PLANES : 1103 ; 5.000 ; HARMONIC REMARK 3 ISOTROPIC THERMAL FACTORS : 7610 ; 20.000 ; HARMONIC REMARK 3 BAD NON-BONDED CONTACTS : NULL ; NULL ; NULL REMARK 3 IMPROPER TORSIONS : NULL ; NULL ; NULL REMARK 3 PSEUDOROTATION ANGLES : NULL ; NULL ; NULL REMARK 3 CHIRAL IMPROPER TORSION : 1020 ; 5.000 ; SEMIHARMONIC REMARK 3 SUM OF OCCUPANCIES : NULL ; NULL ; NULL REMARK 3 UTILITY DISTANCES : NULL ; NULL ; NULL REMARK 3 UTILITY ANGLES : NULL ; NULL ; NULL REMARK 3 UTILITY TORSION : NULL ; NULL ; NULL REMARK 3 IDEAL-DIST CONTACT TERM : 8361 ; 4.000 ; SEMIHARMONIC REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.009 REMARK 3 BOND ANGLES (DEGREES) : 1.26 REMARK 3 PEPTIDE OMEGA TORSION ANGLES (DEGREES) : 2.61 REMARK 3 OTHER TORSION ANGLES (DEGREES) : 18.57 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5UG0 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 13-JAN-17. REMARK 100 THE DEPOSITION ID IS D_1000225806. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 05-AUG-15 REMARK 200 TEMPERATURE (KELVIN) : 293.15 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 24-ID-E REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97923 REMARK 200 MONOCHROMATOR : CRYOGENICALLY-COOLED SINGLE REMARK 200 CRYSTAL SI(220) REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 32426 REMARK 200 RESOLUTION RANGE HIGH (A) : 3.400 REMARK 200 RESOLUTION RANGE LOW (A) : 46.410 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.6 REMARK 200 DATA REDUNDANCY : 3.672 REMARK 200 R MERGE (I) : 0.27400 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 5.7500 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 3.40 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 3.61 REMARK 200 COMPLETENESS FOR SHELL (%) : 97.0 REMARK 200 DATA REDUNDANCY IN SHELL : 3.73 REMARK 200 R MERGE FOR SHELL (I) : 3.47300 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 0.440 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PDB ENTRY 3SM5 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 78.35 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 5.68 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 10% W/V PEG8000, 100 MM HEPES, VAPOR REMARK 280 DIFFUSION, HANGING DROP, TEMPERATURE 293.15K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 3 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z REMARK 290 3555 -X+Y,-X,Z REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z REMARK 290 6555 -X,-X+Y,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DODECAMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C, D, E, F, G REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C, D, E, F, G REMARK 350 BIOMT1 2 -0.500000 -0.866025 0.000000 -71.10000 REMARK 350 BIOMT2 2 0.866025 -0.500000 0.000000 123.14881 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C, D, E, F, G REMARK 350 BIOMT1 3 -0.500000 0.866025 0.000000 -142.20000 REMARK 350 BIOMT2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 350 BIOMT3 3 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ARG A 330 REMARK 465 GLY B 1 REMARK 465 LEU B 2 REMARK 465 PHE B 3 REMARK 465 ASP B 174 REMARK 465 GLY B 175 REMARK 465 VAL B 176 REMARK 465 ARG B 177 REMARK 465 SER B 178 REMARK 465 LEU B 179 REMARK 465 VAL B 180 REMARK 465 PRO B 181 REMARK 465 ARG B 182 REMARK 465 ARG C 213 REMARK 465 GLY C 214 REMARK 465 GLU C 215 REMARK 465 CYS C 216 REMARK 465 LYS D 228 REMARK 465 SER D 229 REMARK 465 CYS D 230 REMARK 465 ASP D 231 REMARK 465 LYS D 232 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 THR C 52 C - N - CA ANGL. DEV. = 15.0 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 15 79.21 -104.20 REMARK 500 ASP A 18 104.98 -57.45 REMARK 500 THR A 22 -168.25 -127.51 REMARK 500 LYS A 49 -38.33 71.80 REMARK 500 ASN A 58 -7.99 -58.80 REMARK 500 LEU A 73 13.95 -148.18 REMARK 500 LEU A 74 5.00 -61.83 REMARK 500 ILE A 75 -151.93 -69.69 REMARK 500 SER A 76 6.29 -61.46 REMARK 500 GLU A 78 -22.40 -140.50 REMARK 500 PRO A 87 -62.11 -20.49 REMARK 500 ASN A 91 79.78 -105.88 REMARK 500 GLU A 119 85.92 -61.96 REMARK 500 GLU A 124 41.80 -78.58 REMARK 500 SER A 125 -68.93 -169.40 REMARK 500 THR A 133 27.71 -73.36 REMARK 500 CYS A 139 47.55 -105.35 REMARK 500 ASN A 142 17.88 59.41 REMARK 500 SER A 146 -154.93 -147.92 REMARK 500 ASN A 158 -67.80 64.52 REMARK 500 LYS A 172 -27.53 -33.95 REMARK 500 HIS A 196 1.70 51.06 REMARK 500 ARG A 262 166.43 64.90 REMARK 500 SER A 291 37.67 -59.73 REMARK 500 VAL A 298 -71.62 -69.44 REMARK 500 SER A 326 -176.04 -60.68 REMARK 500 ILE A 327 -99.63 15.11 REMARK 500 ILE B 6 -120.12 60.65 REMARK 500 ALA B 7 166.23 54.35 REMARK 500 PHE B 9 -79.28 58.85 REMARK 500 HIS B 25 -64.89 -109.33 REMARK 500 HIS B 26 134.30 69.09 REMARK 500 GLN B 30 41.58 -102.82 REMARK 500 VAL B 66 -53.17 -129.21 REMARK 500 LEU B 73 44.90 -96.35 REMARK 500 GLU B 74 10.01 -143.25 REMARK 500 LYS B 127 -134.53 72.46 REMARK 500 ASN B 129 7.90 -64.45 REMARK 500 ASN B 135 111.53 50.66 REMARK 500 HIS B 142 -9.08 -145.30 REMARK 500 LYS B 143 112.00 64.03 REMARK 500 TYR B 157 -69.22 60.09 REMARK 500 ASP B 158 83.58 79.55 REMARK 500 SER C 31 -68.12 25.11 REMARK 500 TYR C 32 -20.09 -35.36 REMARK 500 GLU C 51 21.07 45.23 REMARK 500 THR C 52 -67.74 84.50 REMARK 500 ARG C 54 138.65 -34.80 REMARK 500 THR C 57 30.00 -69.34 REMARK 500 GLU C 80 -179.07 -61.25 REMARK 500 REMARK 500 THIS ENTRY HAS 91 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 610 REMARK 610 MISSING HETEROATOM REMARK 610 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 610 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 610 I=INSERTION CODE): REMARK 610 M RES C SSEQI REMARK 610 NAG A 407 DBREF 5UG0 A 5 330 UNP A7UPX0 A7UPX0_9INFA 18 343 DBREF 5UG0 B 1 176 UNP A7UPX0 A7UPX0_9INFA 344 519 DBREF 5UG0 C 1 107 PDB 5UG0 5UG0 1 107 DBREF 5UG0 C 108 216 UNP Q6PIL8 Q6PIL8_HUMAN 128 236 DBREF 5UG0 D 1 127 PDB 5UG0 5UG0 1 127 DBREF 5UG0 D 128 232 UNP Q6N089 Q6N089_HUMAN 143 247 SEQADV 5UG0 GLU A 4 UNP A7UPX0 EXPRESSION TAG SEQADV 5UG0 ARG B 177 UNP A7UPX0 EXPRESSION TAG SEQADV 5UG0 SER B 178 UNP A7UPX0 EXPRESSION TAG SEQADV 5UG0 LEU B 179 UNP A7UPX0 EXPRESSION TAG SEQADV 5UG0 VAL B 180 UNP A7UPX0 EXPRESSION TAG SEQADV 5UG0 PRO B 181 UNP A7UPX0 EXPRESSION TAG SEQADV 5UG0 ARG B 182 UNP A7UPX0 EXPRESSION TAG SEQRES 1 A 327 GLU ASP THR ILE CYS ILE GLY TYR HIS ALA ASN ASN SER SEQRES 2 A 327 THR ASP THR VAL ASP THR VAL LEU GLU LYS ASN VAL THR SEQRES 3 A 327 VAL THR HIS SER VAL ASN LEU LEU GLU ASP SER HIS ASN SEQRES 4 A 327 GLY LYS LEU CYS LEU LEU LYS GLY ILE ALA PRO LEU GLN SEQRES 5 A 327 LEU GLY ASN CYS SER VAL ALA GLY TRP ILE LEU GLY ASN SEQRES 6 A 327 PRO GLU CYS GLU LEU LEU ILE SER ARG GLU SER TRP SER SEQRES 7 A 327 TYR ILE VAL GLU LYS PRO ASN PRO GLU ASN GLY THR CYS SEQRES 8 A 327 TYR PRO GLY HIS PHE ALA ASP TYR GLU GLU LEU ARG GLU SEQRES 9 A 327 GLN LEU SER SER VAL SER SER PHE GLU ARG PHE GLU ILE SEQRES 10 A 327 PHE PRO LYS GLU SER SER TRP PRO ASN HIS THR THR THR SEQRES 11 A 327 GLY VAL SER ALA SER CYS SER HIS ASN GLY GLU SER SER SEQRES 12 A 327 PHE TYR LYS ASN LEU LEU TRP LEU THR GLY LYS ASN GLY SEQRES 13 A 327 LEU TYR PRO ASN LEU SER LYS SER TYR ALA ASN ASN LYS SEQRES 14 A 327 GLU LYS GLU VAL LEU VAL LEU TRP GLY VAL HIS HIS PRO SEQRES 15 A 327 PRO ASN ILE GLY ASP GLN ARG ALA LEU TYR HIS THR GLU SEQRES 16 A 327 ASN ALA TYR VAL SER VAL VAL SER SER HIS TYR SER ARG SEQRES 17 A 327 LYS PHE THR PRO GLU ILE ALA LYS ARG PRO LYS VAL ARG SEQRES 18 A 327 ASP ARG GLU GLY ARG ILE ASN TYR TYR TRP THR LEU LEU SEQRES 19 A 327 GLU PRO GLY ASP THR ILE ILE PHE GLU ALA ASN GLY ASN SEQRES 20 A 327 LEU ILE ALA PRO ARG TYR ALA PHE ALA LEU SER ARG GLY SEQRES 21 A 327 PHE GLY SER GLY ILE ILE ASN SER ASN ALA PRO MET ASP SEQRES 22 A 327 GLU CYS ASP ALA LYS CYS GLN THR PRO GLN GLY ALA ILE SEQRES 23 A 327 ASN SER SER LEU PRO PHE GLN ASN VAL HIS PRO VAL THR SEQRES 24 A 327 ILE GLY GLU CYS PRO LYS TYR VAL ARG SER ALA LYS LEU SEQRES 25 A 327 ARG MET VAL THR GLY LEU ARG ASN ILE PRO SER ILE GLN SEQRES 26 A 327 SER ARG SEQRES 1 B 182 GLY LEU PHE GLY ALA ILE ALA GLY PHE ILE GLU GLY GLY SEQRES 2 B 182 TRP THR GLY MET VAL ASP GLY TRP TYR GLY TYR HIS HIS SEQRES 3 B 182 GLN ASN GLU GLN GLY SER GLY TYR ALA ALA ASP GLN LYS SEQRES 4 B 182 SER THR GLN ASN ALA ILE ASN GLY ILE THR ASN LYS VAL SEQRES 5 B 182 ASN SER VAL ILE GLU LYS MET ASN THR GLN PHE THR ALA SEQRES 6 B 182 VAL GLY LYS GLU PHE ASN LYS LEU GLU ARG ARG MET GLU SEQRES 7 B 182 ASN LEU ASN LYS LYS VAL ASP ASP GLY PHE ILE ASP ILE SEQRES 8 B 182 TRP THR TYR ASN ALA GLU LEU LEU VAL LEU LEU GLU ASN SEQRES 9 B 182 GLU ARG THR LEU ASP PHE HIS ASP SER ASN VAL LYS ASN SEQRES 10 B 182 LEU TYR GLU LYS VAL LYS SER GLN LEU LYS ASN ASN ALA SEQRES 11 B 182 LYS GLU ILE GLY ASN GLY CYS PHE GLU PHE TYR HIS LYS SEQRES 12 B 182 CYS ASN ASP GLU CYS MET GLU SER VAL LYS ASN GLY THR SEQRES 13 B 182 TYR ASP TYR PRO LYS TYR SER GLU GLU SER LYS LEU ASN SEQRES 14 B 182 ARG GLU LYS ILE ASP GLY VAL ARG SER LEU VAL PRO ARG SEQRES 1 C 216 GLU ILE VAL LEU THR GLN SER PRO GLY THR LEU SER LEU SEQRES 2 C 216 SER PRO GLY GLU LYS ALA THR LEU SER CYS ARG ALA SER SEQRES 3 C 216 GLN SER VAL SER SER TYR TYR LEU GLY TRP TYR GLN GLN SEQRES 4 C 216 LYS PRO GLY GLN ALA PRO ARG LEU LEU ILE TYR GLU THR SEQRES 5 C 216 SER ARG ARG ALA THR GLY ILE PRO ASP ARG PHE SER GLY SEQRES 6 C 216 SER GLY SER GLY THR ASP PHE THR LEU THR ILE SER GLY SEQRES 7 C 216 LEU GLU PRO GLU ASP PHE ALA VAL TYR TYR CYS GLN HIS SEQRES 8 C 216 TYR GLY VAL SER PRO VAL ILE THR PHE GLY GLY GLY THR SEQRES 9 C 216 LYS VAL GLU ILE LYS ARG THR VAL ALA ALA PRO SER VAL SEQRES 10 C 216 PHE ILE PHE PRO PRO SER ASP GLU GLN LEU LYS SER GLY SEQRES 11 C 216 THR ALA SER VAL VAL CYS LEU LEU ASN ASN PHE TYR PRO SEQRES 12 C 216 ARG GLU ALA LYS VAL GLN TRP LYS VAL ASP ASN ALA LEU SEQRES 13 C 216 GLN SER GLY ASN SER GLN GLU SER VAL THR GLU GLN ASP SEQRES 14 C 216 SER LYS ASP SER THR TYR SER LEU SER SER THR LEU THR SEQRES 15 C 216 LEU SER LYS ALA ASP TYR GLU LYS HIS LYS VAL TYR ALA SEQRES 16 C 216 CYS GLU VAL THR HIS GLN GLY LEU SER SER PRO VAL THR SEQRES 17 C 216 LYS SER PHE ASN ARG GLY GLU CYS SEQRES 1 D 232 GLU VAL GLN LEU VAL GLU SER GLY GLY GLY LEU VAL GLN SEQRES 2 D 232 PRO GLY GLY SER LEU ARG LEU SER CYS ALA ALA SER GLY SEQRES 3 D 232 PHE THR PHE ASN ILE TYR ASP MET HIS TRP VAL ARG GLN SEQRES 4 D 232 ALA PRO GLY LYS GLY LEU GLU TRP VAL SER SER ILE THR SEQRES 5 D 232 THR ALA GLY ASP THR TYR TYR PRO GLY SER VAL LYS GLY SEQRES 6 D 232 ARG PHE THR THR SER ARG GLU ASN ALA LYS ASN SER LEU SEQRES 7 D 232 TYR LEU GLN MET ASN SER LEU ARG ALA GLY ASP THR GLY SEQRES 8 D 232 VAL TYR TYR CYS THR ARG GLY VAL ARG GLU VAL GLY ALA SEQRES 9 D 232 THR GLY ASP ASP PRO PHE TYR TYR GLY MET TYR VAL TRP SEQRES 10 D 232 GLY GLN GLY THR THR VAL THR VAL SER GLY ALA SER THR SEQRES 11 D 232 LYS GLY PRO SER VAL PHE PRO LEU ALA PRO SER SER LYS SEQRES 12 D 232 SER THR SER GLY GLY THR ALA ALA LEU GLY CYS LEU VAL SEQRES 13 D 232 LYS ASP TYR PHE PRO GLU PRO VAL THR VAL SER TRP ASN SEQRES 14 D 232 SER GLY ALA LEU THR SER GLY VAL HIS THR PHE PRO ALA SEQRES 15 D 232 VAL LEU GLN SER SER GLY LEU TYR SER LEU SER SER VAL SEQRES 16 D 232 VAL THR VAL PRO SER SER SER LEU GLY THR GLN THR TYR SEQRES 17 D 232 ILE CYS ASN VAL ASN HIS LYS PRO SER ASN THR LYS VAL SEQRES 18 D 232 ASP LYS ARG VAL GLU PRO LYS SER CYS ASP LYS HET NAG E 1 14 HET NAG E 2 14 HET BMA E 3 11 HET NAG F 1 14 HET NAG F 2 14 HET NAG G 1 14 HET NAG G 2 14 HET BMA G 3 11 HET NAG A 401 14 HET NAG A 402 14 HET NAG A 406 14 HET NAG A 407 14 HET NAG B 201 14 HETNAM NAG 2-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE HETNAM BMA BETA-D-MANNOPYRANOSE HETSYN NAG N-ACETYL-BETA-D-GLUCOSAMINE; 2-ACETAMIDO-2-DEOXY-BETA- HETSYN 2 NAG D-GLUCOSE; 2-ACETAMIDO-2-DEOXY-D-GLUCOSE; 2-ACETAMIDO- HETSYN 3 NAG 2-DEOXY-GLUCOSE; N-ACETYL-D-GLUCOSAMINE HETSYN BMA BETA-D-MANNOSE; D-MANNOSE; MANNOSE FORMUL 5 NAG 11(C8 H15 N O6) FORMUL 5 BMA 2(C6 H12 O6) HELIX 1 AA1 SER A 60 GLY A 67 1 8 HELIX 2 AA2 ASP A 101 SER A 111 1 11 HELIX 3 AA3 PRO A 122 TRP A 127 1 6 HELIX 4 AA4 ASN A 187 TYR A 195 1 9 HELIX 5 AA5 ASP B 37 MET B 59 1 23 HELIX 6 AA6 ASN B 71 LEU B 73 5 3 HELIX 7 AA7 GLU B 74 LYS B 127 1 54 HELIX 8 AA8 ASN B 145 ASN B 154 1 10 HELIX 9 AA9 ASP B 158 GLU B 171 1 14 HELIX 10 AB1 GLU C 125 SER C 129 5 5 HELIX 11 AB2 SER C 184 GLU C 189 1 6 HELIX 12 AB3 THR D 28 ASN D 30 5 3 SHEET 1 AA1 5 ALA B 35 ALA B 36 0 SHEET 2 AA1 5 TYR B 22 TYR B 24 -1 N TYR B 24 O ALA B 35 SHEET 3 AA1 5 THR A 6 TYR A 11 -1 N GLY A 10 O GLY B 23 SHEET 4 AA1 5 CYS B 137 PHE B 140 -1 O PHE B 138 N ILE A 7 SHEET 5 AA1 5 ALA B 130 LYS B 131 -1 O LYS B 131 N GLU B 139 SHEET 1 AA2 2 THR A 19 VAL A 20 0 SHEET 2 AA2 2 VAL A 28 THR A 29 -1 O VAL A 28 N VAL A 20 SHEET 1 AA3 2 SER A 33 ASN A 35 0 SHEET 2 AA3 2 ARG A 316 VAL A 318 -1 O MET A 317 N VAL A 34 SHEET 1 AA4 2 LEU A 37 GLU A 38 0 SHEET 2 AA4 2 PHE A 295 GLN A 296 1 O PHE A 295 N GLU A 38 SHEET 1 AA5 2 LEU A 45 LEU A 48 0 SHEET 2 AA5 2 MET A 275 ALA A 280 1 O ASP A 276 N LEU A 45 SHEET 1 AA6 3 LEU A 54 GLN A 55 0 SHEET 2 AA6 3 ILE A 83 GLU A 85 1 O VAL A 84 N LEU A 54 SHEET 3 AA6 3 ILE A 268 ASN A 270 1 O ILE A 269 N ILE A 83 SHEET 1 AA7 5 ARG A 117 PHE A 118 0 SHEET 2 AA7 5 ALA A 257 LEU A 260 -1 O ALA A 257 N PHE A 118 SHEET 3 AA7 5 GLU A 175 HIS A 184 -1 N LEU A 177 O PHE A 258 SHEET 4 AA7 5 LEU A 251 PRO A 254 -1 O ILE A 252 N GLY A 181 SHEET 5 AA7 5 LEU A 151 TRP A 153 -1 N LEU A 152 O ALA A 253 SHEET 1 AA8 4 ARG A 117 PHE A 118 0 SHEET 2 AA8 4 ALA A 257 LEU A 260 -1 O ALA A 257 N PHE A 118 SHEET 3 AA8 4 GLU A 175 HIS A 184 -1 N LEU A 177 O PHE A 258 SHEET 4 AA8 4 ARG A 229 LEU A 237 -1 O ARG A 229 N HIS A 184 SHEET 1 AA9 2 SER A 136 HIS A 141 0 SHEET 2 AA9 2 GLU A 144 SER A 146 -1 O SER A 146 N SER A 136 SHEET 1 AB1 4 LEU A 164 ALA A 169 0 SHEET 2 AB1 4 THR A 242 ALA A 247 -1 O PHE A 245 N LYS A 166 SHEET 3 AB1 4 VAL A 202 SER A 206 -1 N SER A 203 O GLU A 246 SHEET 4 AB1 4 TYR A 209 PHE A 213 -1 O PHE A 213 N VAL A 202 SHEET 1 AB2 4 GLY A 287 ILE A 289 0 SHEET 2 AB2 4 CYS A 282 THR A 284 -1 N THR A 284 O GLY A 287 SHEET 3 AB2 4 ILE A 303 CYS A 306 -1 O ILE A 303 N GLN A 283 SHEET 4 AB2 4 GLN B 62 PHE B 63 -1 O GLN B 62 N CYS A 306 SHEET 1 AB3 4 LEU C 4 SER C 7 0 SHEET 2 AB3 4 ALA C 19 ALA C 25 -1 O SER C 22 N SER C 7 SHEET 3 AB3 4 ASP C 71 ILE C 76 -1 O ILE C 76 N ALA C 19 SHEET 4 AB3 4 PHE C 63 SER C 68 -1 N SER C 66 O THR C 73 SHEET 1 AB4 3 LEU C 47 ILE C 49 0 SHEET 2 AB4 3 LEU C 34 TYR C 37 -1 N TRP C 36 O LEU C 48 SHEET 3 AB4 3 TYR C 88 HIS C 91 -1 O TYR C 88 N TYR C 37 SHEET 1 AB5 3 PHE C 118 ILE C 119 0 SHEET 2 AB5 3 CYS C 136 PHE C 141 -1 O LEU C 137 N PHE C 118 SHEET 3 AB5 3 TYR C 175 LEU C 177 -1 O TYR C 175 N PHE C 141 SHEET 1 AB6 2 ALA C 132 VAL C 134 0 SHEET 2 AB6 2 LEU C 181 LEU C 183 -1 O LEU C 181 N VAL C 134 SHEET 1 AB7 3 LYS C 147 VAL C 152 0 SHEET 2 AB7 3 TYR C 194 THR C 199 -1 O GLU C 197 N GLN C 149 SHEET 3 AB7 3 THR C 208 PHE C 211 -1 O LYS C 209 N CYS C 196 SHEET 1 AB8 4 GLN D 3 SER D 7 0 SHEET 2 AB8 4 LEU D 18 SER D 25 -1 O SER D 21 N SER D 7 SHEET 3 AB8 4 SER D 77 MET D 82 -1 O MET D 82 N LEU D 18 SHEET 4 AB8 4 PHE D 67 GLU D 72 -1 N GLU D 72 O SER D 77 SHEET 1 AB9 6 LEU D 11 VAL D 12 0 SHEET 2 AB9 6 THR D 121 VAL D 125 1 O THR D 124 N VAL D 12 SHEET 3 AB9 6 GLY D 91 ARG D 100 -1 N GLY D 91 O VAL D 123 SHEET 4 AB9 6 TYR D 32 GLN D 39 -1 N GLN D 39 O VAL D 92 SHEET 5 AB9 6 LEU D 45 ILE D 51 -1 O VAL D 48 N TRP D 36 SHEET 6 AB9 6 THR D 57 TYR D 58 -1 O TYR D 58 N SER D 50 SHEET 1 AC1 4 LEU D 11 VAL D 12 0 SHEET 2 AC1 4 THR D 121 VAL D 125 1 O THR D 124 N VAL D 12 SHEET 3 AC1 4 GLY D 91 ARG D 100 -1 N GLY D 91 O VAL D 123 SHEET 4 AC1 4 MET D 114 TRP D 117 -1 O TYR D 115 N ARG D 97 SHEET 1 AC2 4 SER D 134 VAL D 135 0 SHEET 2 AC2 4 LEU D 152 TYR D 159 -1 O LYS D 157 N SER D 134 SHEET 3 AC2 4 TYR D 190 VAL D 196 -1 O TYR D 190 N TYR D 159 SHEET 4 AC2 4 VAL D 177 THR D 179 -1 N HIS D 178 O VAL D 195 SHEET 1 AC3 4 SER D 134 VAL D 135 0 SHEET 2 AC3 4 LEU D 152 TYR D 159 -1 O LYS D 157 N SER D 134 SHEET 3 AC3 4 TYR D 190 VAL D 196 -1 O TYR D 190 N TYR D 159 SHEET 4 AC3 4 VAL D 183 LEU D 184 -1 N VAL D 183 O SER D 191 SHEET 1 AC4 3 VAL D 164 TRP D 168 0 SHEET 2 AC4 3 CYS D 210 HIS D 214 -1 O ASN D 211 N SER D 167 SHEET 3 AC4 3 THR D 219 VAL D 221 -1 O THR D 219 N HIS D 214 SSBOND 1 CYS A 8 CYS B 137 1555 1555 2.05 SSBOND 2 CYS A 46 CYS A 278 1555 1555 2.04 SSBOND 3 CYS A 59 CYS A 71 1555 1555 2.05 SSBOND 4 CYS A 94 CYS A 139 1555 1555 2.05 SSBOND 5 CYS A 282 CYS A 306 1555 1555 2.04 SSBOND 6 CYS B 144 CYS B 148 1555 1555 2.03 SSBOND 7 CYS C 23 CYS C 89 1555 1555 2.05 SSBOND 8 CYS C 136 CYS C 196 1555 1555 2.04 SSBOND 9 CYS D 22 CYS D 95 1555 1555 2.04 SSBOND 10 CYS D 154 CYS D 210 1555 1555 2.03 LINK ND2 ASN A 15 C1 NAG A 402 1555 1555 1.43 LINK ND2 ASN A 27 C1 NAG A 406 1555 1555 1.44 LINK ND2 ASN A 58 C1 NAG A 401 1555 1555 1.44 LINK ND2 ASN A 91 C1 NAG E 1 1555 1555 1.43 LINK ND2 ASN A 129 C1 NAG F 1 1555 1555 1.44 LINK ND2 ASN A 163 C1 NAG G 1 1555 1555 1.43 LINK ND2 ASN B 154 C1 NAG B 201 1555 1555 1.43 LINK O4 NAG E 1 C1 NAG E 2 1555 1555 1.43 LINK O4 NAG E 2 C1 BMA E 3 1555 1555 1.44 LINK O4 NAG F 1 C1 NAG F 2 1555 1555 1.42 LINK O4 NAG G 1 C1 NAG G 2 1555 1555 1.44 LINK O4 NAG G 2 C1 BMA G 3 1555 1555 1.43 CISPEP 1 SER C 7 PRO C 8 0 1.35 CISPEP 2 SER C 95 PRO C 96 0 2.97 CISPEP 3 PHE D 160 PRO D 161 0 -3.30 CISPEP 4 GLU D 162 PRO D 163 0 4.91 CRYST1 142.200 142.200 200.410 90.00 90.00 120.00 P 3 2 1 6 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.007032 0.004060 0.000000 0.00000 SCALE2 0.000000 0.008120 0.000000 0.00000 SCALE3 0.000000 0.000000 0.004990 0.00000