HEADER HYDROLASE 11-JAN-17 5UHO TITLE CRYSTAL STRUCTURE OF THE CORE CATALYTIC DOMAIN OF HUMAN O-GLCNACASE TITLE 2 COMPLEXED WITH PUGNAC COMPND MOL_ID: 1; COMPND 2 MOLECULE: O-GLCNACASE TIM-BARREL DOMAIN; COMPND 3 CHAIN: A, C; COMPND 4 SYNONYM: OGA,BETA-N-ACETYLGLUCOSAMINIDASE,BETA-N- COMPND 5 ACETYLHEXOSAMINIDASE,BETA-HEXOSAMINIDASE,MENINGIOMA-EXPRESSED ANTIGEN COMPND 6 5,N-ACETYL-BETA-D-GLUCOSAMINIDASE,N-ACETYL-BETA-GLUCOSAMINIDASE, COMPND 7 NUCLEAR CYTOPLASMIC O-GLCNACASE AND ACETYLTRANSFERASE,NCOAT; COMPND 8 EC: 3.2.1.169,3.2.1.-; COMPND 9 ENGINEERED: YES; COMPND 10 MOL_ID: 2; COMPND 11 MOLECULE: O-GLCNACASE STALK DOMAIN; COMPND 12 CHAIN: B, D; COMPND 13 SYNONYM: OGA,BETA-N-ACETYLGLUCOSAMINIDASE,BETA-N- COMPND 14 ACETYLHEXOSAMINIDASE,BETA-HEXOSAMINIDASE,MENINGIOMA-EXPRESSED ANTIGEN COMPND 15 5,N-ACETYL-BETA-D-GLUCOSAMINIDASE,N-ACETYL-BETA-GLUCOSAMINIDASE, COMPND 16 NUCLEAR CYTOPLASMIC O-GLCNACASE AND ACETYLTRANSFERASE,NCOAT; COMPND 17 EC: 3.2.1.169,3.2.1.-; COMPND 18 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: MGEA5, HEXC, KIAA0679, MEA5; SOURCE 6 EXPRESSION_SYSTEM: SPODOPTERA FRUGIPERDA; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 7108; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: BACULOVIRUS; SOURCE 9 MOL_ID: 2; SOURCE 10 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 11 ORGANISM_COMMON: HUMAN; SOURCE 12 ORGANISM_TAXID: 9606; SOURCE 13 GENE: MGEA5, HEXC, KIAA0679, MEA5; SOURCE 14 EXPRESSION_SYSTEM: SPODOPTERA FRUGIPERDA; SOURCE 15 EXPRESSION_SYSTEM_TAXID: 7108; SOURCE 16 EXPRESSION_SYSTEM_VECTOR_TYPE: BACULOVIRUS KEYWDS HYDROLASE, O-GLCNACASE, GH84, ENZYME, PUGNAC EXPDTA X-RAY DIFFRACTION AUTHOR D.J.KLEIN,N.L.ELSEN REVDAT 2 06-MAR-24 5UHO 1 REMARK REVDAT 1 29-MAR-17 5UHO 0 JRNL AUTH N.L.ELSEN,S.B.PATEL,R.E.FORD,D.L.HALL,F.HESS,H.KANDULA, JRNL AUTH 2 M.KORNIENKO,K.J.LUMB,J.REID,H.SELNICK,J.M.SHIPMAN,S.SHARMA, JRNL AUTH 3 S.M.SOISSON,D.J.KLEIN JRNL TITL CRYSTAL STRUCTURE OF THE CORE CATALYTIC DOMAIN OF HUMAN JRNL TITL 2 O-GLCNACASE AND MOLECULAR BASIS OF ACTIVITY AND INHIBITION JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 3.21 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : BUSTER 2.11.6 REMARK 3 AUTHORS : BRICOGNE,BLANC,BRANDL,FLENSBURG,KELLER, REMARK 3 : PACIOREK,ROVERSI,SHARFF,SMART,VONRHEIN, REMARK 3 : WOMACK,MATTHEWS,TEN EYCK,TRONRUD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 3.21 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 34.38 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 3 NUMBER OF REFLECTIONS : 21293 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.200 REMARK 3 R VALUE (WORKING SET) : 0.197 REMARK 3 FREE R VALUE : 0.259 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.050 REMARK 3 FREE R VALUE TEST SET COUNT : 1076 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : 0.000 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 11 REMARK 3 BIN RESOLUTION RANGE HIGH (ANGSTROMS) : 3.21 REMARK 3 BIN RESOLUTION RANGE LOW (ANGSTROMS) : 3.37 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.89 REMARK 3 REFLECTIONS IN BIN (WORKING + TEST SET) : 2756 REMARK 3 BIN R VALUE (WORKING + TEST SET) : 0.2560 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 2592 REMARK 3 BIN R VALUE (WORKING SET) : 0.2520 REMARK 3 BIN FREE R VALUE : 0.3160 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 5.95 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 164 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : 0.000 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 6912 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 50 REMARK 3 SOLVENT ATOMS : 5 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 106.8 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 116.7 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -23.07240 REMARK 3 B22 (A**2) : -23.07240 REMARK 3 B33 (A**2) : 46.14480 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.410 REMARK 3 DPI (BLOW EQ-10) BASED ON R VALUE (A) : NULL REMARK 3 DPI (BLOW EQ-9) BASED ON FREE R VALUE (A) : 0.470 REMARK 3 DPI (CRUICKSHANK) BASED ON R VALUE (A) : NULL REMARK 3 DPI (CRUICKSHANK) BASED ON FREE R VALUE (A) : NULL REMARK 3 REMARK 3 REFERENCES: BLOW, D. (2002) ACTA CRYST D58, 792-797 REMARK 3 CRUICKSHANK, D.W.J. (1999) ACTA CRYST D55, 583-601 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.913 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.848 REMARK 3 REMARK 3 NUMBER OF GEOMETRIC FUNCTION TERMS DEFINED : 15 REMARK 3 TERM COUNT WEIGHT FUNCTION. REMARK 3 BOND LENGTHS : 7144 ; 2.000 ; HARMONIC REMARK 3 BOND ANGLES : 9664 ; 2.000 ; HARMONIC REMARK 3 TORSION ANGLES : 2475 ; 2.000 ; SINUSOIDAL REMARK 3 TRIGONAL CARBON PLANES : 166 ; 8.000 ; HARMONIC REMARK 3 GENERAL PLANES : 1036 ; 8.000 ; HARMONIC REMARK 3 ISOTROPIC THERMAL FACTORS : 7144 ; 20.000 ; HARMONIC REMARK 3 BAD NON-BONDED CONTACTS : NULL ; NULL ; NULL REMARK 3 IMPROPER TORSIONS : NULL ; NULL ; NULL REMARK 3 PSEUDOROTATION ANGLES : NULL ; NULL ; NULL REMARK 3 CHIRAL IMPROPER TORSION : 883 ; 5.000 ; SEMIHARMONIC REMARK 3 SUM OF OCCUPANCIES : NULL ; NULL ; NULL REMARK 3 UTILITY DISTANCES : NULL ; NULL ; NULL REMARK 3 UTILITY ANGLES : NULL ; NULL ; NULL REMARK 3 UTILITY TORSION : NULL ; NULL ; NULL REMARK 3 IDEAL-DIST CONTACT TERM : 8658 ; 4.000 ; SEMIHARMONIC REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.010 REMARK 3 BOND ANGLES (DEGREES) : 1.18 REMARK 3 PEPTIDE OMEGA TORSION ANGLES (DEGREES) : 1.90 REMARK 3 OTHER TORSION ANGLES (DEGREES) : 22.27 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5UHO COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 17-JAN-17. REMARK 100 THE DEPOSITION ID IS D_1000225881. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 26-JUL-13 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 17-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.00 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 21392 REMARK 200 RESOLUTION RANGE HIGH (A) : 3.210 REMARK 200 RESOLUTION RANGE LOW (A) : 130.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 12.80 REMARK 200 R MERGE (I) : 0.09100 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 22.4000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 3.21 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 3.22 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 13.30 REMARK 200 R MERGE FOR SHELL (I) : 1.07200 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 2.300 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: NULL REMARK 200 SOFTWARE USED: NULL REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 53.13 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.62 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 14-17% PEG 3350, 0.2 M MG FORMATE, REMARK 280 VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 41 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y+1/2,X+1/2,Z+1/4 REMARK 290 4555 Y+1/2,-X+1/2,Z+3/4 REMARK 290 5555 -X+1/2,Y+1/2,-Z+1/4 REMARK 290 6555 X+1/2,-Y+1/2,-Z+3/4 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 130.22500 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 48.67000 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 48.67000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 65.11250 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 48.67000 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 48.67000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 195.33750 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 48.67000 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 48.67000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 65.11250 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 48.67000 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 48.67000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 195.33750 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 130.22500 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 13140 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 32920 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -90.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 56 REMARK 465 ALA A 57 REMARK 465 LYS A 341 REMARK 465 ASP A 342 REMARK 465 VAL A 343 REMARK 465 VAL A 344 REMARK 465 MET A 345 REMARK 465 THR A 346 REMARK 465 ASP A 347 REMARK 465 SER A 348 REMARK 465 GLU A 349 REMARK 465 ASP A 350 REMARK 465 SER A 351 REMARK 465 THR A 352 REMARK 465 VAL A 353 REMARK 465 SER A 354 REMARK 465 ILE A 355 REMARK 465 GLN A 356 REMARK 465 ILE A 357 REMARK 465 LYS A 358 REMARK 465 LEU A 359 REMARK 465 GLU A 360 REMARK 465 ASN A 361 REMARK 465 GLU A 362 REMARK 465 GLY A 363 REMARK 465 SER A 364 REMARK 465 ASP A 365 REMARK 465 GLU A 366 REMARK 465 ASP A 367 REMARK 465 ILE A 368 REMARK 465 GLU A 369 REMARK 465 THR A 370 REMARK 465 ASP A 371 REMARK 465 VAL A 393 REMARK 465 PRO A 394 REMARK 465 HIS A 395 REMARK 465 GLN A 396 REMARK 465 TYR A 397 REMARK 465 SER A 398 REMARK 465 SER A 399 REMARK 465 ARG A 400 REMARK 465 VAL B 591 REMARK 465 VAL B 592 REMARK 465 SER B 593 REMARK 465 VAL B 594 REMARK 465 ASN B 595 REMARK 465 CYS B 596 REMARK 465 LYS B 597 REMARK 465 GLY B 598 REMARK 465 LYS B 599 REMARK 465 ASP B 600 REMARK 465 SER B 601 REMARK 465 GLU B 602 REMARK 465 LYS B 603 REMARK 465 ILE B 604 REMARK 465 GLU B 605 REMARK 465 SER B 665 REMARK 465 HIS B 666 REMARK 465 SER B 667 REMARK 465 SER B 668 REMARK 465 ALA B 669 REMARK 465 GLN B 670 REMARK 465 PHE B 671 REMARK 465 LEU B 672 REMARK 465 ILE B 673 REMARK 465 GLY B 674 REMARK 465 ASP B 675 REMARK 465 GLN B 676 REMARK 465 GLU B 677 REMARK 465 PRO B 678 REMARK 465 TRP B 679 REMARK 465 ALA B 680 REMARK 465 PHE B 681 REMARK 465 ILE B 695 REMARK 465 ASP B 696 REMARK 465 GLY B 697 REMARK 465 ALA B 698 REMARK 465 ASN B 699 REMARK 465 ASP B 700 REMARK 465 LEU B 701 REMARK 465 PHE B 702 REMARK 465 PHE B 703 REMARK 465 GLN B 704 REMARK 465 PRO B 705 REMARK 465 GLY C 56 REMARK 465 ALA C 57 REMARK 465 VAL C 339 REMARK 465 ARG C 340 REMARK 465 LYS C 341 REMARK 465 ASP C 342 REMARK 465 VAL C 343 REMARK 465 VAL C 344 REMARK 465 MET C 345 REMARK 465 THR C 346 REMARK 465 ASP C 347 REMARK 465 SER C 348 REMARK 465 GLU C 349 REMARK 465 ASP C 350 REMARK 465 SER C 351 REMARK 465 THR C 352 REMARK 465 VAL C 353 REMARK 465 SER C 354 REMARK 465 ILE C 355 REMARK 465 GLN C 356 REMARK 465 ILE C 357 REMARK 465 LYS C 358 REMARK 465 LEU C 359 REMARK 465 GLU C 360 REMARK 465 ASN C 361 REMARK 465 GLU C 362 REMARK 465 GLY C 363 REMARK 465 SER C 364 REMARK 465 ASP C 365 REMARK 465 GLU C 366 REMARK 465 ASP C 367 REMARK 465 ILE C 368 REMARK 465 GLU C 369 REMARK 465 THR C 370 REMARK 465 ASP C 371 REMARK 465 VAL C 393 REMARK 465 PRO C 394 REMARK 465 HIS C 395 REMARK 465 GLN C 396 REMARK 465 TYR C 397 REMARK 465 SER C 398 REMARK 465 SER C 399 REMARK 465 ARG C 400 REMARK 465 SER D 590 REMARK 465 VAL D 591 REMARK 465 VAL D 592 REMARK 465 SER D 593 REMARK 465 VAL D 594 REMARK 465 ASN D 595 REMARK 465 CYS D 596 REMARK 465 LYS D 597 REMARK 465 GLY D 598 REMARK 465 LYS D 599 REMARK 465 ASP D 600 REMARK 465 SER D 601 REMARK 465 GLU D 602 REMARK 465 LYS D 603 REMARK 465 ARG D 664 REMARK 465 SER D 665 REMARK 465 HIS D 666 REMARK 465 SER D 667 REMARK 465 SER D 668 REMARK 465 ALA D 669 REMARK 465 GLN D 670 REMARK 465 PHE D 671 REMARK 465 LEU D 672 REMARK 465 ILE D 673 REMARK 465 GLY D 674 REMARK 465 ASP D 675 REMARK 465 GLN D 676 REMARK 465 GLU D 677 REMARK 465 PRO D 678 REMARK 465 TRP D 679 REMARK 465 ALA D 680 REMARK 465 PHE D 681 REMARK 465 ILE D 695 REMARK 465 ASP D 696 REMARK 465 GLY D 697 REMARK 465 ALA D 698 REMARK 465 ASN D 699 REMARK 465 ASP D 700 REMARK 465 LEU D 701 REMARK 465 PHE D 702 REMARK 465 PHE D 703 REMARK 465 GLN D 704 REMARK 465 PRO D 705 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 THR A 222 CG2 REMARK 470 ARG B 608 CG CD NE CZ NH1 NH2 REMARK 470 ARG B 664 CG CD NE CZ NH1 NH2 REMARK 470 ARG C 167 CG CD NE CZ NH1 NH2 REMARK 470 GLU C 262 CG CD OE1 OE2 REMARK 470 ILE D 604 CG1 CG2 CD1 REMARK 470 ARG D 608 CG CD NE CZ NH1 NH2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ARG A 71 109.15 -51.53 REMARK 500 ALA A 96 32.80 -141.39 REMARK 500 ASP A 99 -102.51 -84.39 REMARK 500 ASP A 100 96.24 19.18 REMARK 500 ARG A 104 -75.67 -111.05 REMARK 500 PHE A 106 69.91 -105.04 REMARK 500 SER A 112 -168.96 -72.82 REMARK 500 GLU A 130 67.76 37.05 REMARK 500 GLU A 208 61.69 36.34 REMARK 500 GLU A 218 70.78 -106.60 REMARK 500 THR A 222 11.88 -65.74 REMARK 500 GLU A 239 -73.64 -77.41 REMARK 500 ARG A 273 160.06 178.66 REMARK 500 ASN A 284 22.55 -140.80 REMARK 500 TYR A 286 -33.09 -34.53 REMARK 500 TYR A 296 86.61 -63.62 REMARK 500 PRO A 314 -168.03 -101.20 REMARK 500 PHE B 565 72.24 -112.15 REMARK 500 TYR B 566 -98.73 -81.23 REMARK 500 SER B 656 2.64 -61.30 REMARK 500 ARG C 71 109.09 -52.88 REMARK 500 TYR C 93 112.90 -165.88 REMARK 500 ASP C 100 98.74 -16.69 REMARK 500 HIS C 103 -39.98 -156.70 REMARK 500 PHE C 106 43.21 -98.34 REMARK 500 LEU C 141 -86.35 -52.19 REMARK 500 HIS C 178 11.89 -68.38 REMARK 500 SER C 189 -77.45 -54.11 REMARK 500 GLU C 208 74.42 36.87 REMARK 500 PHE C 223 -2.15 -54.08 REMARK 500 TYR C 286 -6.63 -59.01 REMARK 500 ASP C 287 84.49 -163.38 REMARK 500 GLN C 288 9.40 -63.16 REMARK 500 TYR C 296 75.16 -68.44 REMARK 500 PRO C 314 -168.11 -103.13 REMARK 500 ASN C 335 27.39 -141.43 REMARK 500 ASN C 337 86.52 -59.86 REMARK 500 TYR D 566 -100.14 -93.10 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue OAN A 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue OAN C 501 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 5UHP RELATED DB: PDB REMARK 900 RELATED ID: 5UHL RELATED DB: PDB REMARK 900 RELATED ID: 5UHK RELATED DB: PDB DBREF 5UHO A 56 400 UNP O60502 OGA_HUMAN 56 400 DBREF 5UHO B 544 705 UNP O60502 OGA_HUMAN 544 705 DBREF 5UHO C 56 400 UNP O60502 OGA_HUMAN 56 400 DBREF 5UHO D 544 705 UNP O60502 OGA_HUMAN 544 705 SEQADV 5UHO MET B 543 UNP O60502 INITIATING METHIONINE SEQADV 5UHO MET D 543 UNP O60502 INITIATING METHIONINE SEQRES 1 A 345 GLY ALA ARG ARG PHE LEU CYS GLY VAL VAL GLU GLY PHE SEQRES 2 A 345 TYR GLY ARG PRO TRP VAL MET GLU GLN ARG LYS GLU LEU SEQRES 3 A 345 PHE ARG ARG LEU GLN LYS TRP GLU LEU ASN THR TYR LEU SEQRES 4 A 345 TYR ALA PRO LYS ASP ASP TYR LYS HIS ARG MET PHE TRP SEQRES 5 A 345 ARG GLU MET TYR SER VAL GLU GLU ALA GLU GLN LEU MET SEQRES 6 A 345 THR LEU ILE SER ALA ALA ARG GLU TYR GLU ILE GLU PHE SEQRES 7 A 345 ILE TYR ALA ILE SER PRO GLY LEU ASP ILE THR PHE SER SEQRES 8 A 345 ASN PRO LYS GLU VAL SER THR LEU LYS ARG LYS LEU ASP SEQRES 9 A 345 GLN VAL SER GLN PHE GLY CYS ARG SER PHE ALA LEU LEU SEQRES 10 A 345 PHE ASP ASP ILE ASP HIS ASN MET CYS ALA ALA ASP LYS SEQRES 11 A 345 GLU VAL PHE SER SER PHE ALA HIS ALA GLN VAL SER ILE SEQRES 12 A 345 THR ASN GLU ILE TYR GLN TYR LEU GLY GLU PRO GLU THR SEQRES 13 A 345 PHE LEU PHE CYS PRO THR GLU TYR CYS GLY THR PHE CYS SEQRES 14 A 345 TYR PRO ASN VAL SER GLN SER PRO TYR LEU ARG THR VAL SEQRES 15 A 345 GLY GLU LYS LEU LEU PRO GLY ILE GLU VAL LEU TRP THR SEQRES 16 A 345 GLY PRO LYS VAL VAL SER LYS GLU ILE PRO VAL GLU SER SEQRES 17 A 345 ILE GLU GLU VAL SER LYS ILE ILE LYS ARG ALA PRO VAL SEQRES 18 A 345 ILE TRP ASP ASN ILE HIS ALA ASN ASP TYR ASP GLN LYS SEQRES 19 A 345 ARG LEU PHE LEU GLY PRO TYR LYS GLY ARG SER THR GLU SEQRES 20 A 345 LEU ILE PRO ARG LEU LYS GLY VAL LEU THR ASN PRO ASN SEQRES 21 A 345 CYS GLU PHE GLU ALA ASN TYR VAL ALA ILE HIS THR LEU SEQRES 22 A 345 ALA THR TRP TYR LYS SER ASN MET ASN GLY VAL ARG LYS SEQRES 23 A 345 ASP VAL VAL MET THR ASP SER GLU ASP SER THR VAL SER SEQRES 24 A 345 ILE GLN ILE LYS LEU GLU ASN GLU GLY SER ASP GLU ASP SEQRES 25 A 345 ILE GLU THR ASP VAL LEU TYR SER PRO GLN MET ALA LEU SEQRES 26 A 345 LYS LEU ALA LEU THR GLU TRP LEU GLN GLU PHE GLY VAL SEQRES 27 A 345 PRO HIS GLN TYR SER SER ARG SEQRES 1 B 163 MET GLU LYS PRO LEU TYR THR ALA GLU PRO VAL THR LEU SEQRES 2 B 163 GLU ASP LEU GLN LEU LEU ALA ASP LEU PHE TYR LEU PRO SEQRES 3 B 163 TYR GLU HIS GLY PRO LYS GLY ALA GLN MET LEU ARG GLU SEQRES 4 B 163 PHE GLN TRP LEU ARG ALA ASN SER SER VAL VAL SER VAL SEQRES 5 B 163 ASN CYS LYS GLY LYS ASP SER GLU LYS ILE GLU GLU TRP SEQRES 6 B 163 ARG SER ARG ALA ALA LYS PHE GLU GLU MET CYS GLY LEU SEQRES 7 B 163 VAL MET GLY MET PHE THR ARG LEU SER ASN CYS ALA ASN SEQRES 8 B 163 ARG THR ILE LEU TYR ASP MET TYR SER TYR VAL TRP ASP SEQRES 9 B 163 ILE LYS SER ILE MET SER MET VAL LYS SER PHE VAL GLN SEQRES 10 B 163 TRP LEU GLY CYS ARG SER HIS SER SER ALA GLN PHE LEU SEQRES 11 B 163 ILE GLY ASP GLN GLU PRO TRP ALA PHE ARG GLY GLY LEU SEQRES 12 B 163 ALA GLY GLU PHE GLN ARG LEU LEU PRO ILE ASP GLY ALA SEQRES 13 B 163 ASN ASP LEU PHE PHE GLN PRO SEQRES 1 C 345 GLY ALA ARG ARG PHE LEU CYS GLY VAL VAL GLU GLY PHE SEQRES 2 C 345 TYR GLY ARG PRO TRP VAL MET GLU GLN ARG LYS GLU LEU SEQRES 3 C 345 PHE ARG ARG LEU GLN LYS TRP GLU LEU ASN THR TYR LEU SEQRES 4 C 345 TYR ALA PRO LYS ASP ASP TYR LYS HIS ARG MET PHE TRP SEQRES 5 C 345 ARG GLU MET TYR SER VAL GLU GLU ALA GLU GLN LEU MET SEQRES 6 C 345 THR LEU ILE SER ALA ALA ARG GLU TYR GLU ILE GLU PHE SEQRES 7 C 345 ILE TYR ALA ILE SER PRO GLY LEU ASP ILE THR PHE SER SEQRES 8 C 345 ASN PRO LYS GLU VAL SER THR LEU LYS ARG LYS LEU ASP SEQRES 9 C 345 GLN VAL SER GLN PHE GLY CYS ARG SER PHE ALA LEU LEU SEQRES 10 C 345 PHE ASP ASP ILE ASP HIS ASN MET CYS ALA ALA ASP LYS SEQRES 11 C 345 GLU VAL PHE SER SER PHE ALA HIS ALA GLN VAL SER ILE SEQRES 12 C 345 THR ASN GLU ILE TYR GLN TYR LEU GLY GLU PRO GLU THR SEQRES 13 C 345 PHE LEU PHE CYS PRO THR GLU TYR CYS GLY THR PHE CYS SEQRES 14 C 345 TYR PRO ASN VAL SER GLN SER PRO TYR LEU ARG THR VAL SEQRES 15 C 345 GLY GLU LYS LEU LEU PRO GLY ILE GLU VAL LEU TRP THR SEQRES 16 C 345 GLY PRO LYS VAL VAL SER LYS GLU ILE PRO VAL GLU SER SEQRES 17 C 345 ILE GLU GLU VAL SER LYS ILE ILE LYS ARG ALA PRO VAL SEQRES 18 C 345 ILE TRP ASP ASN ILE HIS ALA ASN ASP TYR ASP GLN LYS SEQRES 19 C 345 ARG LEU PHE LEU GLY PRO TYR LYS GLY ARG SER THR GLU SEQRES 20 C 345 LEU ILE PRO ARG LEU LYS GLY VAL LEU THR ASN PRO ASN SEQRES 21 C 345 CYS GLU PHE GLU ALA ASN TYR VAL ALA ILE HIS THR LEU SEQRES 22 C 345 ALA THR TRP TYR LYS SER ASN MET ASN GLY VAL ARG LYS SEQRES 23 C 345 ASP VAL VAL MET THR ASP SER GLU ASP SER THR VAL SER SEQRES 24 C 345 ILE GLN ILE LYS LEU GLU ASN GLU GLY SER ASP GLU ASP SEQRES 25 C 345 ILE GLU THR ASP VAL LEU TYR SER PRO GLN MET ALA LEU SEQRES 26 C 345 LYS LEU ALA LEU THR GLU TRP LEU GLN GLU PHE GLY VAL SEQRES 27 C 345 PRO HIS GLN TYR SER SER ARG SEQRES 1 D 163 MET GLU LYS PRO LEU TYR THR ALA GLU PRO VAL THR LEU SEQRES 2 D 163 GLU ASP LEU GLN LEU LEU ALA ASP LEU PHE TYR LEU PRO SEQRES 3 D 163 TYR GLU HIS GLY PRO LYS GLY ALA GLN MET LEU ARG GLU SEQRES 4 D 163 PHE GLN TRP LEU ARG ALA ASN SER SER VAL VAL SER VAL SEQRES 5 D 163 ASN CYS LYS GLY LYS ASP SER GLU LYS ILE GLU GLU TRP SEQRES 6 D 163 ARG SER ARG ALA ALA LYS PHE GLU GLU MET CYS GLY LEU SEQRES 7 D 163 VAL MET GLY MET PHE THR ARG LEU SER ASN CYS ALA ASN SEQRES 8 D 163 ARG THR ILE LEU TYR ASP MET TYR SER TYR VAL TRP ASP SEQRES 9 D 163 ILE LYS SER ILE MET SER MET VAL LYS SER PHE VAL GLN SEQRES 10 D 163 TRP LEU GLY CYS ARG SER HIS SER SER ALA GLN PHE LEU SEQRES 11 D 163 ILE GLY ASP GLN GLU PRO TRP ALA PHE ARG GLY GLY LEU SEQRES 12 D 163 ALA GLY GLU PHE GLN ARG LEU LEU PRO ILE ASP GLY ALA SEQRES 13 D 163 ASN ASP LEU PHE PHE GLN PRO HET OAN A 501 25 HET OAN C 501 25 HETNAM OAN O-(2-ACETAMIDO-2-DEOXY D-GLUCOPYRANOSYLIDENE) AMINO-N- HETNAM 2 OAN PHENYLCARBAMATE HETSYN OAN PUGNAC FORMUL 5 OAN 2(C15 H19 N3 O7) FORMUL 7 HOH *5(H2 O) HELIX 1 AA1 VAL A 74 TRP A 88 1 15 HELIX 2 AA2 SER A 112 TYR A 129 1 18 HELIX 3 AA3 ASN A 147 GLN A 163 1 17 HELIX 4 AA4 CYS A 181 PHE A 188 1 8 HELIX 5 AA5 SER A 190 GLY A 207 1 18 HELIX 6 AA6 CYS A 220 CYS A 224 5 5 HELIX 7 AA7 SER A 231 LEU A 241 1 11 HELIX 8 AA8 PRO A 260 ILE A 271 1 12 HELIX 9 AA9 SER A 300 LEU A 307 5 8 HELIX 10 AB1 GLU A 317 GLU A 319 5 3 HELIX 11 AB2 ALA A 320 ASN A 335 1 16 HELIX 12 AB3 SER A 375 GLN A 389 1 15 HELIX 13 AB4 THR B 554 PHE B 565 1 12 HELIX 14 AB5 GLY B 572 ASN B 588 1 17 HELIX 15 AB6 TRP B 607 CYS B 631 1 25 HELIX 16 AB7 ASN B 633 MET B 640 1 8 HELIX 17 AB8 MET B 640 CYS B 663 1 24 HELIX 18 AB9 GLY B 684 LEU B 692 1 9 HELIX 19 AC1 VAL C 74 TRP C 88 1 15 HELIX 20 AC2 SER C 112 TYR C 129 1 18 HELIX 21 AC3 ASN C 147 PHE C 164 1 18 HELIX 22 AC4 CYS C 181 PHE C 188 1 8 HELIX 23 AC5 SER C 190 LEU C 206 1 17 HELIX 24 AC6 ASN C 227 GLN C 230 5 4 HELIX 25 AC7 SER C 231 LEU C 241 1 11 HELIX 26 AC8 PRO C 260 ILE C 271 1 12 HELIX 27 AC9 ASN C 280 ALA C 283 5 4 HELIX 28 AD1 SER C 300 LEU C 307 5 8 HELIX 29 AD2 PHE C 318 ALA C 320 5 3 HELIX 30 AD3 ASN C 321 MET C 336 1 16 HELIX 31 AD4 SER C 375 LEU C 388 1 14 HELIX 32 AD5 THR D 554 PHE D 565 1 12 HELIX 33 AD6 GLY D 572 ALA D 587 1 16 HELIX 34 AD7 GLU D 605 ASN D 630 1 26 HELIX 35 AD8 ASN D 633 ASP D 639 1 7 HELIX 36 AD9 MET D 640 LEU D 661 1 22 HELIX 37 AE1 GLY D 683 GLN D 690 1 8 SHEET 1 AA1 9 LEU A 61 GLU A 66 0 SHEET 2 AA1 9 THR A 92 TYR A 95 1 O LEU A 94 N GLU A 66 SHEET 3 AA1 9 GLU A 132 ILE A 137 1 O GLU A 132 N TYR A 93 SHEET 4 AA1 9 SER A 168 LEU A 172 1 O LEU A 172 N ILE A 137 SHEET 5 AA1 9 PHE A 212 CYS A 215 1 O CYS A 215 N LEU A 171 SHEET 6 AA1 9 GLU A 246 TRP A 249 1 O GLU A 246 N PHE A 212 SHEET 7 AA1 9 VAL A 276 ASP A 279 1 O VAL A 276 N VAL A 247 SHEET 8 AA1 9 GLY A 309 THR A 312 1 O LEU A 311 N ILE A 277 SHEET 9 AA1 9 LEU A 61 GLU A 66 1 N GLY A 63 O THR A 312 SHEET 1 AA2 9 LEU C 61 GLU C 66 0 SHEET 2 AA2 9 THR C 92 TYR C 95 1 O LEU C 94 N GLU C 66 SHEET 3 AA2 9 GLU C 132 ILE C 137 1 O ILE C 134 N TYR C 95 SHEET 4 AA2 9 SER C 168 LEU C 172 1 O SER C 168 N TYR C 135 SHEET 5 AA2 9 PHE C 212 CYS C 215 1 O LEU C 213 N LEU C 171 SHEET 6 AA2 9 GLU C 246 TRP C 249 1 O GLU C 246 N PHE C 212 SHEET 7 AA2 9 VAL C 276 ASP C 279 1 O TRP C 278 N TRP C 249 SHEET 8 AA2 9 GLY C 309 THR C 312 1 O LEU C 311 N ILE C 277 SHEET 9 AA2 9 LEU C 61 GLU C 66 1 N GLY C 63 O THR C 312 CISPEP 1 TYR A 225 PRO A 226 0 0.34 CISPEP 2 TYR C 225 PRO C 226 0 2.76 SITE 1 AC1 12 GLY A 67 LYS A 98 ASP A 174 ASP A 175 SITE 2 AC1 12 TYR A 219 THR A 250 VAL A 254 TRP A 278 SITE 3 AC1 12 ASN A 280 ASP A 285 TYR A 286 ASN A 313 SITE 1 AC2 12 GLY C 67 PHE C 68 LYS C 98 ASP C 174 SITE 2 AC2 12 ASP C 175 TYR C 219 THR C 250 VAL C 254 SITE 3 AC2 12 ASN C 280 ASP C 285 TYR C 286 ASN C 313 CRYST1 97.340 97.340 260.450 90.00 90.00 90.00 P 41 21 2 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.010273 0.000000 0.000000 0.00000 SCALE2 0.000000 0.010273 0.000000 0.00000 SCALE3 0.000000 0.000000 0.003840 0.00000