HEADER ANTIMICROBIAL PROTEIN 13-JAN-17 5UI7 TITLE SOLUTION NMR STRUCTURE OF LASSO PEPTIDE KLEBSIDIN COMPND MOL_ID: 1; COMPND 2 MOLECULE: KLEBSIDIN; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: KLEBSIELLA PNEUMONIAE 4541-2; SOURCE 3 ORGANISM_TAXID: 1455603; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI BW25113; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 679895 KEYWDS LASSO PEPTIDE RNAP INHIBITOR, STRUCTURE FROM CYANA 2.1, ANTIMICROBIAL KEYWDS 2 PROTEIN EXPDTA SOLUTION NMR NUMMDL 10 AUTHOR L.B.BUSHIN,M.METELEV,K.SEVERINOV,M.R.SEYEDSAYAMDOST REVDAT 4 15-MAY-24 5UI7 1 REMARK REVDAT 3 14-JUN-23 5UI7 1 REMARK REVDAT 2 29-MAR-17 5UI7 1 JRNL REVDAT 1 08-FEB-17 5UI7 0 JRNL AUTH M.METELEV,A.ARSENIEV,L.B.BUSHIN,K.KUZNEDELOV,T.O.ARTAMONOVA, JRNL AUTH 2 R.KONDRATENKO,M.KHODORKOVSKII,M.R.SEYEDSAYAMDOST,K.SEVERINOV JRNL TITL ACINETODIN AND KLEBSIDIN, RNA POLYMERASE TARGETING LASSO JRNL TITL 2 PEPTIDES PRODUCED BY HUMAN ISOLATES OF ACINETOBACTER JRNL TITL 3 GYLLENBERGII AND KLEBSIELLA PNEUMONIAE. JRNL REF ACS CHEM. BIOL. V. 12 814 2017 JRNL REFN ESSN 1554-8937 JRNL PMID 28106375 JRNL DOI 10.1021/ACSCHEMBIO.6B01154 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CYANA REMARK 3 AUTHORS : GUNTERT, MUMENTHALER AND WUTHRICH REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5UI7 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 18-JAN-17. REMARK 100 THE DEPOSITION ID IS D_1000225915. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 283 REMARK 210 PH : 7 REMARK 210 IONIC STRENGTH : NULL REMARK 210 PRESSURE : AMBIENT PA REMARK 210 SAMPLE CONTENTS : 10 MG/ML KLEBSIDIN, 90% H2O/10% REMARK 210 D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 1D 1H; 2D 1H-1H COSY; 2D 1H-1H REMARK 210 TOCSY; 2D 1H-1H NOESY; 2D 1H-13C REMARK 210 HSQC; 2D 1H-13C HMBC REMARK 210 SPECTROMETER FIELD STRENGTH : 800 MHZ REMARK 210 SPECTROMETER MODEL : AVANCE III REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : MESTRENOVA REMARK 210 METHOD USED : SIMULATED ANNEALING REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 100 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 10 REMARK 210 CONFORMERS, SELECTION CRITERIA : TARGET FUNCTION REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 N GLY A 1 OE1 GLU A 8 1.57 REMARK 500 N GLY A 1 CD GLU A 8 1.72 REMARK 500 N GLY A 1 OE2 GLU A 8 2.12 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 SER A 2 -75.93 -158.89 REMARK 500 1 ASP A 3 65.31 -170.95 REMARK 500 1 ASN A 11 65.59 61.62 REMARK 500 1 PRO A 12 -170.45 -69.76 REMARK 500 1 VAL A 15 88.06 -150.36 REMARK 500 2 SER A 2 -76.37 -160.12 REMARK 500 2 ASP A 3 65.11 -169.37 REMARK 500 2 PHE A 9 43.04 -108.17 REMARK 500 2 ASN A 13 -34.42 179.58 REMARK 500 3 SER A 2 -75.06 -139.41 REMARK 500 3 PHE A 9 42.87 -107.50 REMARK 500 3 ASN A 13 -50.95 178.40 REMARK 500 3 VAL A 15 106.75 -179.30 REMARK 500 4 SER A 2 -76.02 -162.02 REMARK 500 4 ASP A 3 65.17 -168.70 REMARK 500 4 PHE A 9 50.92 -105.57 REMARK 500 4 PHE A 10 41.68 -148.90 REMARK 500 4 ASN A 13 66.13 63.89 REMARK 500 4 VAL A 15 83.62 64.88 REMARK 500 4 HIS A 17 -173.67 -67.56 REMARK 500 5 SER A 2 -76.94 -165.66 REMARK 500 5 ASP A 3 66.13 -168.75 REMARK 500 5 PHE A 9 55.84 -103.58 REMARK 500 5 PHE A 10 29.78 -156.14 REMARK 500 5 ASN A 11 73.16 51.08 REMARK 500 5 ASN A 13 -58.71 178.22 REMARK 500 5 VAL A 15 101.38 64.44 REMARK 500 6 SER A 2 -82.96 -156.59 REMARK 500 6 ASP A 3 47.42 173.25 REMARK 500 6 PRO A 12 -170.15 -69.74 REMARK 500 6 VAL A 15 88.81 179.52 REMARK 500 7 SER A 2 -76.75 -179.26 REMARK 500 7 ASP A 3 65.60 -170.85 REMARK 500 7 PHE A 9 49.69 -106.45 REMARK 500 7 PHE A 10 20.40 -144.75 REMARK 500 7 ASN A 13 34.33 177.99 REMARK 500 7 VAL A 15 107.12 -179.67 REMARK 500 8 SER A 2 -84.38 -155.76 REMARK 500 8 ASP A 3 36.08 175.95 REMARK 500 8 PHE A 9 42.23 -108.25 REMARK 500 8 PRO A 12 -170.40 -69.73 REMARK 500 8 VAL A 15 76.10 64.48 REMARK 500 9 SER A 2 -84.42 -155.72 REMARK 500 9 ASP A 3 36.19 175.90 REMARK 500 9 PHE A 9 42.27 -108.15 REMARK 500 9 PRO A 12 -170.46 -69.75 REMARK 500 9 VAL A 15 75.98 64.52 REMARK 500 10 SER A 2 -84.61 -169.07 REMARK 500 10 ASP A 3 49.37 173.44 REMARK 500 10 PHE A 9 44.07 -107.02 REMARK 500 REMARK 500 THIS ENTRY HAS 52 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 30230 RELATED DB: BMRB REMARK 900 SOLUTION NMR STRUCTURE OF LASSO PEPTIDE KLEBSIDIN REMARK 900 RELATED ID: 5UI6 RELATED DB: PDB DBREF 5UI7 A 1 19 PDB 5UI7 5UI7 1 19 SEQRES 1 A 19 GLY SER ASP GLY PRO ILE ILE GLU PHE PHE ASN PRO ASN SEQRES 2 A 19 GLY VAL MET HIS TYR GLY SHEET 1 AA1 2 ILE A 6 ILE A 7 0 SHEET 2 AA1 2 HIS A 17 TYR A 18 -1 O TYR A 18 N ILE A 6 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1