HEADER TRANSFERASE 14-JAN-17 5UIM TITLE X-RAY STRUCTURE OF THE FDTF N-FORMYLTRANSFERASE FROM SALMONELLA TITLE 2 ENTERIC O60 IN COMPLEX WITH FOLINIC ACID AND TDP-QUI3N COMPND MOL_ID: 1; COMPND 2 MOLECULE: FORMYLTRANSFERASE; COMPND 3 CHAIN: A, B; COMPND 4 ENGINEERED: YES; COMPND 5 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SALMONELLA CHOLERAESUIS; SOURCE 3 ORGANISM_TAXID: 28901; SOURCE 4 GENE: FDTF; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: ROSETTA2(DE3) KEYWDS ANKYRIN REPEAT, LIPOPOLYSACCHARIDE, O-ANTIGEN, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR C.R.WOODFORD,J.B.THODEN,H.M.HOLDEN REVDAT 5 04-OCT-23 5UIM 1 LINK REVDAT 4 01-JAN-20 5UIM 1 REMARK REVDAT 3 03-JAN-18 5UIM 1 JRNL REVDAT 2 20-SEP-17 5UIM 1 REMARK REVDAT 1 22-MAR-17 5UIM 0 JRNL AUTH C.R.WOODFORD,J.B.THODEN,H.M.HOLDEN JRNL TITL MOLECULAR ARCHITECTURE OF AN N-FORMYLTRANSFERASE FROM JRNL TITL 2 SALMONELLA ENTERICA O60. JRNL REF J. STRUCT. BIOL. V. 200 267 2017 JRNL REFN ESSN 1095-8657 JRNL PMID 28263875 JRNL DOI 10.1016/J.JSB.2017.03.002 REMARK 2 REMARK 2 RESOLUTION. 2.20 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0124 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.20 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 50.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 95.2 REMARK 3 NUMBER OF REFLECTIONS : 40390 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.198 REMARK 3 R VALUE (WORKING SET) : 0.195 REMARK 3 FREE R VALUE : 0.264 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 2149 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.20 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.26 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2693 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 86.00 REMARK 3 BIN R VALUE (WORKING SET) : 0.3150 REMARK 3 BIN FREE R VALUE SET COUNT : 150 REMARK 3 BIN FREE R VALUE : 0.3390 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 6464 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 169 REMARK 3 SOLVENT ATOMS : 230 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 32.47 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.19000 REMARK 3 B22 (A**2) : 2.01000 REMARK 3 B33 (A**2) : -1.56000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : -1.11000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.323 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.248 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.224 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 9.469 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.946 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.894 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 6787 ; 0.013 ; 0.020 REMARK 3 BOND LENGTHS OTHERS (A): 6514 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 9186 ; 1.699 ; 1.994 REMARK 3 BOND ANGLES OTHERS (DEGREES): 15048 ; 0.902 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 799 ; 7.511 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 297 ;38.769 ;25.219 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 1257 ;18.315 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 16 ;22.765 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 1025 ; 0.097 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 7428 ; 0.007 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 1513 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 3187 ; 2.673 ; 3.017 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 3188 ; 2.673 ; 3.017 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 3980 ; 4.032 ; 4.516 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 3981 ; 4.033 ; 4.516 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 3600 ; 3.342 ; 3.348 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 3592 ; 3.279 ; 3.344 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 5191 ; 5.138 ; 4.856 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): 8126 ; 6.898 ;24.138 REMARK 3 LONG RANGE B OTHER ATOMS (A**2): 8127 ; 6.898 ;24.139 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 5UIM COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 19-JAN-17. REMARK 100 THE DEPOSITION ID IS D_1000225932. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 06-JUN-16 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 9 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : RIGAKU RU200 REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.5418 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : MONTEL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : BRUKER PLATINUM 135 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : SAINT REMARK 200 DATA SCALING SOFTWARE : SADABS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 42547 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.200 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 95.2 REMARK 200 DATA REDUNDANCY : 3.700 REMARK 200 R MERGE (I) : 0.08400 REMARK 200 R SYM (I) : 0.08400 REMARK 200 FOR THE DATA SET : 9.3000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.20 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.30 REMARK 200 COMPLETENESS FOR SHELL (%) : 86.6 REMARK 200 DATA REDUNDANCY IN SHELL : 1.70 REMARK 200 R MERGE FOR SHELL (I) : 0.29500 REMARK 200 R SYM FOR SHELL (I) : 0.29500 REMARK 200 FOR SHELL : 1.900 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 5UIJ REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 48.31 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.38 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 100 MM CHES 200 MM NME4CL 13-17% PEG REMARK 280 5000 10 MM FOLINIC ACID 10 MM TDP-QUI3N, PH 9, VAPOR DIFFUSION, REMARK 280 HANGING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 29.20300 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 4900 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 35300 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -59.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A -6 REMARK 465 GLY A -5 REMARK 465 GLY A -4 REMARK 465 GLY A -3 REMARK 465 GLY A -2 REMARK 465 GLY A -1 REMARK 465 HIS A 0 REMARK 465 GLY B -6 REMARK 465 GLY B -5 REMARK 465 GLY B -4 REMARK 465 GLY B -3 REMARK 465 GLY B -2 REMARK 465 GLY B -1 REMARK 465 HIS B 0 REMARK 465 LYS B 398 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OD2 ASP B 235 OH TYR B 268 2.15 REMARK 500 NZ LYS A 350 O HOH A 501 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 9 -171.01 60.70 REMARK 500 LYS A 23 44.96 -154.08 REMARK 500 THR A 41 -147.52 -145.51 REMARK 500 SER A 118 -149.19 -128.35 REMARK 500 TYR A 184 -7.16 84.53 REMARK 500 SER A 185 126.99 -32.29 REMARK 500 SER A 196 -59.45 -28.60 REMARK 500 ASN A 197 50.58 -106.98 REMARK 500 LEU A 226 117.55 -160.17 REMARK 500 LEU A 233 -160.55 63.42 REMARK 500 LEU A 237 -178.70 -65.25 REMARK 500 PRO A 245 146.76 -38.28 REMARK 500 ASN A 252 -154.22 -127.03 REMARK 500 ASP A 262 -99.58 -127.31 REMARK 500 ARG A 292 -70.33 -100.52 REMARK 500 ASN B 9 -169.11 62.33 REMARK 500 THR B 41 -149.11 -128.31 REMARK 500 SER B 118 -155.92 -141.15 REMARK 500 LEU B 233 -158.37 71.62 REMARK 500 ASP B 262 -97.35 -125.96 REMARK 500 TYR B 281 -8.42 -149.54 REMARK 500 ASP B 374 30.33 72.23 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A 403 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 TYR A 105 OH REMARK 620 2 LYS A 190 O 81.3 REMARK 620 3 ILE A 193 O 104.6 78.7 REMARK 620 4 HOH A 577 O 96.1 175.0 98.0 REMARK 620 5 HOH A 592 O 163.8 86.6 83.3 96.7 REMARK 620 6 HOH A 598 O 83.8 88.8 163.5 95.1 85.2 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A 404 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 SER A 241 O REMARK 620 2 SER A 259 OG 101.3 REMARK 620 3 THR A 260 O 146.5 100.3 REMARK 620 4 HOH A 506 O 121.5 110.6 73.0 REMARK 620 5 HOH A 549 O 77.0 166.8 76.1 80.7 REMARK 620 6 HOH A 552 O 69.1 89.9 85.7 152.4 77.2 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 K B 405 K REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ILE B 57 O REMARK 620 2 HOH B 517 O 92.1 REMARK 620 3 HOH B 534 O 92.5 78.7 REMARK 620 4 HOH B 537 O 171.8 85.3 94.6 REMARK 620 5 HOH B 599 O 80.1 150.8 73.6 105.8 REMARK 620 6 HOH B 602 O 81.1 55.4 133.1 91.1 147.9 REMARK 620 7 HOH B 603 O 95.1 125.8 153.9 80.2 83.1 72.8 REMARK 620 N 1 2 3 4 5 6 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA B 406 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 TYR B 105 OH REMARK 620 2 LYS B 190 O 84.4 REMARK 620 3 ILE B 193 O 110.0 78.9 REMARK 620 4 HOH B 559 O 101.8 172.0 94.2 REMARK 620 5 HOH B 567 O 173.4 93.7 75.8 80.7 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA B 404 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 SER B 241 O REMARK 620 2 SER B 259 OG 101.7 REMARK 620 3 THR B 260 O 151.6 100.0 REMARK 620 4 HOH B 533 O 99.9 90.6 61.8 REMARK 620 5 HOH B 540 O 84.9 168.3 70.9 78.6 REMARK 620 6 HOH B 562 O 87.7 99.8 106.3 165.6 90.1 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue T3Q A 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue T3Q A 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue NA A 403 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue NA A 404 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue FON B 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue T3Q B 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue TYD B 403 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue NA B 404 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue K B 405 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue NA B 406 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 5UIJ RELATED DB: PDB REMARK 900 RELATED ID: 5UIK RELATED DB: PDB REMARK 900 RELATED ID: 5UIL RELATED DB: PDB REMARK 900 RELATED ID: 5UIN RELATED DB: PDB DBREF 5UIM A 1 398 UNP U3GK13 U3GK13_SALCE 1 398 DBREF 5UIM B 1 398 UNP U3GK13 U3GK13_SALCE 1 398 SEQADV 5UIM GLY A -6 UNP U3GK13 EXPRESSION TAG SEQADV 5UIM GLY A -5 UNP U3GK13 EXPRESSION TAG SEQADV 5UIM GLY A -4 UNP U3GK13 EXPRESSION TAG SEQADV 5UIM GLY A -3 UNP U3GK13 EXPRESSION TAG SEQADV 5UIM GLY A -2 UNP U3GK13 EXPRESSION TAG SEQADV 5UIM GLY A -1 UNP U3GK13 EXPRESSION TAG SEQADV 5UIM HIS A 0 UNP U3GK13 EXPRESSION TAG SEQADV 5UIM ALA A 395 UNP U3GK13 GLU 395 ENGINEERED MUTATION SEQADV 5UIM GLY B -6 UNP U3GK13 EXPRESSION TAG SEQADV 5UIM GLY B -5 UNP U3GK13 EXPRESSION TAG SEQADV 5UIM GLY B -4 UNP U3GK13 EXPRESSION TAG SEQADV 5UIM GLY B -3 UNP U3GK13 EXPRESSION TAG SEQADV 5UIM GLY B -2 UNP U3GK13 EXPRESSION TAG SEQADV 5UIM GLY B -1 UNP U3GK13 EXPRESSION TAG SEQADV 5UIM HIS B 0 UNP U3GK13 EXPRESSION TAG SEQADV 5UIM ALA B 395 UNP U3GK13 GLU 395 ENGINEERED MUTATION SEQRES 1 A 405 GLY GLY GLY GLY GLY GLY HIS MET LYS ILE ILE ILE ALA SEQRES 2 A 405 GLY LYS ASN ASP ILE ALA VAL ASN VAL THR ARG TRP LEU SEQRES 3 A 405 GLN LYS LYS LYS LYS ASN ILE GLU ILE TYR ALA ILE CYS SEQRES 4 A 405 ASN ALA ASN ASP THR GLY ILE ASP THR PHE GLN ARG SER SEQRES 5 A 405 PHE LYS LYS TYR CYS LYS ASP ASN LEU ILE PRO ILE ILE SEQRES 6 A 405 SER LEU ALA GLU ALA TYR LYS ILE ASP ASP ALA ILE PHE SEQRES 7 A 405 LEU SER LEU GLU PHE ASP LYS ILE VAL GLN PRO SER LYS SEQRES 8 A 405 PHE ASN HIS ASN GLU LEU PHE ASN ILE HIS PHE SER TYR SEQRES 9 A 405 LEU PRO LYS TYR LYS GLY MET TYR THR SER ALA TRP PRO SEQRES 10 A 405 ILE LEU ASN GLY GLU ASP THR SER GLY VAL THR LEU HIS SEQRES 11 A 405 LYS ILE ASP HIS GLY ILE ASP THR GLY ALA ILE ILE ALA SEQRES 12 A 405 GLN LYS GLU ILE ILE ILE GLN PRO PHE GLU THR ALA LYS SEQRES 13 A 405 ASP LEU TYR GLU LYS TYR ILE SER GLU GLY THR SER LEU SEQRES 14 A 405 VAL ILE ASP ASN ILE SER THR LEU LEU ASN SER GLU TYR SEQRES 15 A 405 VAL GLU LYS GLU GLN ASN ILE LYS TYR SER SER TYR TYR SEQRES 16 A 405 SER LYS LYS THR ILE ASP TYR SER ASN LEU GLU LEU ASN SEQRES 17 A 405 PHE SER LYS THR ALA PHE GLU ILE ILE ASN GLN LEU ARG SEQRES 18 A 405 ALA PHE THR PHE ARG GLU TYR GLN LEU PRO LYS LEU ASP SEQRES 19 A 405 GLY VAL ASN ILE PHE LEU GLY ASP VAL LEU SER SER ARG SEQRES 20 A 405 SER ILE MET LYS PRO GLY SER ILE LEU GLU ARG ASN ASP SEQRES 21 A 405 LYS GLU ILE ILE VAL SER THR ILE ASP TYR ASP VAL VAL SEQRES 22 A 405 LEU TYR LYS ASP ASN PHE LYS GLU ILE LEU GLU ALA CYS SEQRES 23 A 405 LYS TYR SER ASP SER LYS TYR ILE ALA LYS LEU ILE ARG SEQRES 24 A 405 ALA LYS SER ILE LEU PHE GLU LYS ASN ILE TYR GLY TRP SEQRES 25 A 405 SER PRO VAL ILE VAL ALA ALA TYR HIS GLY ASN ILE GLU SEQRES 26 A 405 LEU ILE LYS TRP LEU VAL SER LYS GLY ALA ASN ILE ASN SEQRES 27 A 405 ASP ARG ASN TYR LYS GLY THR THR VAL ALA MET TYR PHE SEQRES 28 A 405 LYS ASP TYR MET LEU LYS SER GLY ASP TYR SER GLY LEU SEQRES 29 A 405 LYS MET LEU ILE ASP LEU GLY LEU ASP LEU THR LEU THR SEQRES 30 A 405 ASP TYR LYS ASP TYR THR VAL PHE ASP TYR LEU GLU LYS SEQRES 31 A 405 SER GLY ASN LYS ASN LEU LEU GLN TYR MET MET ALA PHE SEQRES 32 A 405 MET LYS SEQRES 1 B 405 GLY GLY GLY GLY GLY GLY HIS MET LYS ILE ILE ILE ALA SEQRES 2 B 405 GLY LYS ASN ASP ILE ALA VAL ASN VAL THR ARG TRP LEU SEQRES 3 B 405 GLN LYS LYS LYS LYS ASN ILE GLU ILE TYR ALA ILE CYS SEQRES 4 B 405 ASN ALA ASN ASP THR GLY ILE ASP THR PHE GLN ARG SER SEQRES 5 B 405 PHE LYS LYS TYR CYS LYS ASP ASN LEU ILE PRO ILE ILE SEQRES 6 B 405 SER LEU ALA GLU ALA TYR LYS ILE ASP ASP ALA ILE PHE SEQRES 7 B 405 LEU SER LEU GLU PHE ASP LYS ILE VAL GLN PRO SER LYS SEQRES 8 B 405 PHE ASN HIS ASN GLU LEU PHE ASN ILE HIS PHE SER TYR SEQRES 9 B 405 LEU PRO LYS TYR LYS GLY MET TYR THR SER ALA TRP PRO SEQRES 10 B 405 ILE LEU ASN GLY GLU ASP THR SER GLY VAL THR LEU HIS SEQRES 11 B 405 LYS ILE ASP HIS GLY ILE ASP THR GLY ALA ILE ILE ALA SEQRES 12 B 405 GLN LYS GLU ILE ILE ILE GLN PRO PHE GLU THR ALA LYS SEQRES 13 B 405 ASP LEU TYR GLU LYS TYR ILE SER GLU GLY THR SER LEU SEQRES 14 B 405 VAL ILE ASP ASN ILE SER THR LEU LEU ASN SER GLU TYR SEQRES 15 B 405 VAL GLU LYS GLU GLN ASN ILE LYS TYR SER SER TYR TYR SEQRES 16 B 405 SER LYS LYS THR ILE ASP TYR SER ASN LEU GLU LEU ASN SEQRES 17 B 405 PHE SER LYS THR ALA PHE GLU ILE ILE ASN GLN LEU ARG SEQRES 18 B 405 ALA PHE THR PHE ARG GLU TYR GLN LEU PRO LYS LEU ASP SEQRES 19 B 405 GLY VAL ASN ILE PHE LEU GLY ASP VAL LEU SER SER ARG SEQRES 20 B 405 SER ILE MET LYS PRO GLY SER ILE LEU GLU ARG ASN ASP SEQRES 21 B 405 LYS GLU ILE ILE VAL SER THR ILE ASP TYR ASP VAL VAL SEQRES 22 B 405 LEU TYR LYS ASP ASN PHE LYS GLU ILE LEU GLU ALA CYS SEQRES 23 B 405 LYS TYR SER ASP SER LYS TYR ILE ALA LYS LEU ILE ARG SEQRES 24 B 405 ALA LYS SER ILE LEU PHE GLU LYS ASN ILE TYR GLY TRP SEQRES 25 B 405 SER PRO VAL ILE VAL ALA ALA TYR HIS GLY ASN ILE GLU SEQRES 26 B 405 LEU ILE LYS TRP LEU VAL SER LYS GLY ALA ASN ILE ASN SEQRES 27 B 405 ASP ARG ASN TYR LYS GLY THR THR VAL ALA MET TYR PHE SEQRES 28 B 405 LYS ASP TYR MET LEU LYS SER GLY ASP TYR SER GLY LEU SEQRES 29 B 405 LYS MET LEU ILE ASP LEU GLY LEU ASP LEU THR LEU THR SEQRES 30 B 405 ASP TYR LYS ASP TYR THR VAL PHE ASP TYR LEU GLU LYS SEQRES 31 B 405 SER GLY ASN LYS ASN LEU LEU GLN TYR MET MET ALA PHE SEQRES 32 B 405 MET LYS HET T3Q A 401 35 HET T3Q A 402 35 HET NA A 403 1 HET NA A 404 1 HET FON B 401 34 HET T3Q B 402 35 HET TYD B 403 25 HET NA B 404 1 HET K B 405 1 HET NA B 406 1 HETNAM T3Q [(3R,4S,5S,6R)-4-AMINO-3,5-DIHYDROXY-6-METHYLOXAN-2- HETNAM 2 T3Q YL][HYDROXY-[[(2R,3S,5R)-3-HYDROXY-5-(5-METHYL-2,4- HETNAM 3 T3Q DIOXOPYRIMIDIN-1-YL)OXOLAN-2-YL]METHOXY]PHOSPHORYL] HETNAM 4 T3Q HYDROGEN PHOSPHATE HETNAM NA SODIUM ION HETNAM FON N-{[4-({[(6R)-2-AMINO-5-FORMYL-4-OXO-1,4,5,6,7,8- HETNAM 2 FON HEXAHYDROPTERIDIN-6-YL]METHYL}AMINO)PHENYL]CARBONYL}- HETNAM 3 FON L-GLUTAMIC ACID HETNAM TYD THYMIDINE-5'-DIPHOSPHATE HETNAM K POTASSIUM ION HETSYN T3Q THYMIDINE-5'-DIPHOSPHATE-ALPHA-D-3,6-DIDEOXY-3- HETSYN 2 T3Q AMINOGLUCOSE HETSYN FON [6R]-5-FORMYL-5,6,7,8-TETRAHYDROFOLATE; 6R-FOLINIC ACID FORMUL 3 T3Q 3(C16 H27 N3 O14 P2) FORMUL 5 NA 4(NA 1+) FORMUL 7 FON C20 H23 N7 O7 FORMUL 9 TYD C10 H16 N2 O11 P2 FORMUL 11 K K 1+ FORMUL 13 HOH *230(H2 O) HELIX 1 AA1 LYS A 8 LYS A 22 1 15 HELIX 2 AA2 SER A 45 ASN A 53 1 9 HELIX 3 AA3 SER A 59 LYS A 65 1 7 HELIX 4 AA4 GLN A 81 PHE A 85 5 5 HELIX 5 AA5 ALA A 108 ASN A 113 1 6 HELIX 6 AA6 THR A 147 ASN A 172 1 26 HELIX 7 AA7 SER A 189 ILE A 193 5 5 HELIX 8 AA8 THR A 205 THR A 217 1 13 HELIX 9 AA9 ASN A 271 SER A 282 1 12 HELIX 10 AB1 ASP A 283 ILE A 291 1 9 HELIX 11 AB2 ALA A 293 GLU A 299 5 7 HELIX 12 AB3 SER A 306 HIS A 314 1 9 HELIX 13 AB4 ASN A 316 GLY A 327 1 12 HELIX 14 AB5 THR A 339 GLY A 352 1 14 HELIX 15 AB6 GLY A 356 LEU A 363 1 8 HELIX 16 AB7 THR A 376 GLY A 385 1 10 HELIX 17 AB8 ASN A 386 MET A 397 1 12 HELIX 18 AB9 LYS B 8 LYS B 23 1 16 HELIX 19 AC1 SER B 45 ASN B 53 1 9 HELIX 20 AC2 SER B 59 LYS B 65 1 7 HELIX 21 AC3 GLN B 81 PHE B 85 5 5 HELIX 22 AC4 ALA B 108 ASN B 113 1 6 HELIX 23 AC5 THR B 147 SER B 173 1 27 HELIX 24 AC6 SER B 189 ILE B 193 5 5 HELIX 25 AC7 ASP B 194 LEU B 198 5 5 HELIX 26 AC8 THR B 205 THR B 217 1 13 HELIX 27 AC9 ASN B 271 CYS B 279 1 9 HELIX 28 AD1 ASP B 283 ILE B 291 1 9 HELIX 29 AD2 ALA B 293 GLU B 299 5 7 HELIX 30 AD3 SER B 306 HIS B 314 1 9 HELIX 31 AD4 ASN B 316 LYS B 326 1 11 HELIX 32 AD5 THR B 339 GLY B 352 1 14 HELIX 33 AD6 GLY B 356 LEU B 363 1 8 HELIX 34 AD7 THR B 376 SER B 384 1 9 HELIX 35 AD8 ASN B 386 ALA B 395 1 10 SHEET 1 AA1 6 GLU A 27 ILE A 31 0 SHEET 2 AA1 6 LYS A 2 GLY A 7 1 N ILE A 5 O TYR A 29 SHEET 3 AA1 6 ALA A 69 LEU A 74 1 O LEU A 74 N ALA A 6 SHEET 4 AA1 6 LEU A 90 HIS A 94 1 O PHE A 91 N PHE A 71 SHEET 5 AA1 6 THR A 117 LYS A 124 -1 O THR A 121 N HIS A 94 SHEET 6 AA1 6 ILE A 134 ILE A 141 -1 O ALA A 136 N LEU A 122 SHEET 1 AA2 2 LYS A 102 GLY A 103 0 SHEET 2 AA2 2 TYR A 187 TYR A 188 1 O TYR A 188 N LYS A 102 SHEET 1 AA3 4 ILE A 231 VAL A 236 0 SHEET 2 AA3 4 VAL A 265 LYS A 269 -1 O TYR A 268 N PHE A 232 SHEET 3 AA3 4 GLU A 255 VAL A 258 -1 N VAL A 258 O VAL A 265 SHEET 4 AA3 4 ILE A 248 ARG A 251 -1 N LEU A 249 O ILE A 257 SHEET 1 AA4 6 GLU B 27 CYS B 32 0 SHEET 2 AA4 6 LYS B 2 GLY B 7 1 N ILE B 3 O TYR B 29 SHEET 3 AA4 6 ALA B 69 LEU B 74 1 O LEU B 74 N ALA B 6 SHEET 4 AA4 6 LEU B 90 HIS B 94 1 O PHE B 91 N SER B 73 SHEET 5 AA4 6 THR B 117 LYS B 124 -1 O THR B 121 N HIS B 94 SHEET 6 AA4 6 ILE B 134 ILE B 141 -1 O ALA B 136 N LEU B 122 SHEET 1 AA5 2 LYS B 102 GLY B 103 0 SHEET 2 AA5 2 TYR B 187 TYR B 188 1 O TYR B 188 N LYS B 102 SHEET 1 AA6 4 ILE B 231 VAL B 236 0 SHEET 2 AA6 4 VAL B 265 LYS B 269 -1 O VAL B 266 N ASP B 235 SHEET 3 AA6 4 GLU B 255 VAL B 258 -1 N ILE B 256 O LEU B 267 SHEET 4 AA6 4 ILE B 248 ASN B 252 -1 N LEU B 249 O ILE B 257 LINK OH TYR A 105 NA NA A 403 1555 1555 2.66 LINK O LYS A 190 NA NA A 403 1555 1555 2.53 LINK O ILE A 193 NA NA A 403 1555 1555 2.40 LINK O SER A 241 NA NA A 404 1555 1555 2.23 LINK OG SER A 259 NA NA A 404 1555 1555 2.48 LINK O THR A 260 NA NA A 404 1555 1555 2.64 LINK NA NA A 403 O HOH A 577 1555 1555 2.21 LINK NA NA A 403 O HOH A 592 1555 1555 2.34 LINK NA NA A 403 O HOH A 598 1555 1555 2.41 LINK NA NA A 404 O HOH A 506 1555 1555 2.37 LINK NA NA A 404 O HOH A 549 1555 1555 2.23 LINK NA NA A 404 O HOH A 552 1555 1555 2.69 LINK O ILE B 57 K K B 405 1555 1555 2.32 LINK OH TYR B 105 NA NA B 406 1555 1555 2.40 LINK O LYS B 190 NA NA B 406 1555 1555 2.45 LINK O ILE B 193 NA NA B 406 1555 1555 2.36 LINK O SER B 241 NA NA B 404 1555 1555 2.37 LINK OG SER B 259 NA NA B 404 1555 1555 2.56 LINK O THR B 260 NA NA B 404 1555 1555 2.47 LINK NA NA B 404 O HOH B 533 1555 1555 2.71 LINK NA NA B 404 O HOH B 540 1555 1555 2.52 LINK NA NA B 404 O HOH B 562 1555 1555 2.16 LINK K K B 405 O HOH B 517 1555 1555 2.70 LINK K K B 405 O HOH B 534 1555 1555 2.46 LINK K K B 405 O HOH B 537 1555 2546 2.46 LINK K K B 405 O HOH B 599 1555 1555 2.59 LINK K K B 405 O HOH B 602 1555 1555 2.61 LINK K K B 405 O HOH B 603 1555 1555 2.03 LINK NA NA B 406 O HOH B 559 1555 1555 2.14 LINK NA NA B 406 O HOH B 567 1555 1555 2.36 CISPEP 1 LEU A 98 PRO A 99 0 13.51 CISPEP 2 LEU B 98 PRO B 99 0 9.60 SITE 1 AC1 20 LYS A 8 GLU A 75 PHE A 76 HIS A 94 SITE 2 AC1 20 GLY A 103 MET A 104 TYR A 105 THR A 106 SITE 3 AC1 20 SER A 107 TYR A 152 TYR A 195 PHE A 218 SITE 4 AC1 20 TYR A 221 GLN A 222 HOH A 514 HOH A 515 SITE 5 AC1 20 HOH A 526 HOH A 527 HOH A 547 HOH A 557 SITE 1 AC2 13 TRP A 305 ILE A 309 VAL A 310 TYR A 313 SITE 2 AC2 13 HIS A 314 ASN A 334 LYS A 336 THR A 338 SITE 3 AC2 13 MET A 342 TYR A 343 ASP A 346 LYS A 373 SITE 4 AC2 13 HOH A 504 SITE 1 AC3 6 TYR A 105 LYS A 190 ILE A 193 HOH A 577 SITE 2 AC3 6 HOH A 592 HOH A 598 SITE 1 AC4 7 SER A 241 MET A 243 SER A 259 THR A 260 SITE 2 AC4 7 HOH A 506 HOH A 549 HOH A 552 SITE 1 AC5 16 SER A 203 PHE B 76 ASP B 77 LYS B 78 SITE 2 AC5 16 ILE B 79 VAL B 80 ASN B 92 ILE B 125 SITE 3 AC5 16 ASP B 126 GLY B 128 ASP B 130 TYR B 187 SITE 4 AC5 16 SER B 189 LYS B 190 HOH B 520 HOH B 576 SITE 1 AC6 11 TRP B 305 TYR B 313 HIS B 314 ASN B 334 SITE 2 AC6 11 THR B 338 MET B 342 TYR B 343 LYS B 345 SITE 3 AC6 11 ASP B 346 TYR B 380 HOH B 515 SITE 1 AC7 15 LYS B 8 GLN B 43 TYR B 105 THR B 106 SITE 2 AC7 15 SER B 107 TYR B 152 TYR B 195 PHE B 218 SITE 3 AC7 15 TYR B 221 GLN B 222 HOH B 501 HOH B 518 SITE 4 AC7 15 HOH B 575 HOH B 583 HOH B 588 SITE 1 AC8 7 SER B 241 MET B 243 SER B 259 THR B 260 SITE 2 AC8 7 HOH B 533 HOH B 540 HOH B 562 SITE 1 AC9 6 ILE B 57 HOH B 517 HOH B 534 HOH B 599 SITE 2 AC9 6 HOH B 602 HOH B 603 SITE 1 AD1 5 TYR B 105 LYS B 190 ILE B 193 HOH B 559 SITE 2 AD1 5 HOH B 567 CRYST1 71.236 58.406 106.781 90.00 96.04 90.00 P 1 21 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.014038 0.000000 0.001486 0.00000 SCALE2 0.000000 0.017122 0.000000 0.00000 SCALE3 0.000000 0.000000 0.009417 0.00000