HEADER TRANSFERASE 14-JAN-17 5UIU TITLE CRYSTAL STRUCTURE OF IRAK4 IN COMPLEX WITH COMPOUND 30 COMPND MOL_ID: 1; COMPND 2 MOLECULE: INTERLEUKIN-1 RECEPTOR-ASSOCIATED KINASE 4; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: UNP RESIDUES 154-460; COMPND 5 SYNONYM: IRAK-4,RENAL CARCINOMA ANTIGEN NY-REN-64; COMPND 6 EC: 2.7.11.1; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: IRAK4; SOURCE 6 EXPRESSION_SYSTEM: SPODOPTERA FRUGIPERDA; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 7108 KEYWDS TRANSFERASE, IRAK4, KINASE EXPDTA X-RAY DIFFRACTION AUTHOR S.HAN,J.S.CHANG REVDAT 2 26-JUL-17 5UIU 1 JRNL REVDAT 1 24-MAY-17 5UIU 0 JRNL AUTH K.L.LEE,C.M.AMBLER,D.R.ANDERSON,B.P.BOSCOE,A.G.BREE, JRNL AUTH 2 J.I.BRODFUEHRER,J.S.CHANG,C.CHOI,S.CHUNG,K.J.CURRAN,J.E.DAY, JRNL AUTH 3 C.M.DEHNHARDT,K.DOWER,S.E.DROZDA,R.K.FRISBIE,L.K.GAVRIN, JRNL AUTH 4 J.A.GOLDBERG,S.HAN,M.HEGEN,D.HEPWORTH,H.R.HOPE,S.KAMTEKAR, JRNL AUTH 5 I.C.KILTY,A.LEE,L.L.LIN,F.E.LOVERING,M.D.LOWE,J.P.MATHIAS, JRNL AUTH 6 H.M.MORGAN,E.A.MURPHY,N.PAPAIOANNOU,A.PATNY,B.S.PIERCE, JRNL AUTH 7 V.R.RAO,E.SAIAH,I.J.SAMARDJIEV,B.M.SAMAS,M.W.H.SHEN, JRNL AUTH 8 J.H.SHIN,H.H.SOUTTER,J.W.STROHBACH,P.T.SYMANOWICZ, JRNL AUTH 9 J.R.THOMASON,J.D.TRZUPEK,R.VARGAS,F.VINCENT,J.YAN,C.W.ZAPF, JRNL AUTH10 S.W.WRIGHT JRNL TITL DISCOVERY OF CLINICAL CANDIDATE JRNL TITL 2 1-{[(2S,3S,4S) JRNL TITL 3 -3-ETHYL-4-FLUORO-5-OXOPYRROLIDIN-2-YL]METHOXY}-7-METHOXYISO JRNL TITL 4 QUINOLINE-6-CARBOXAMIDE (PF-06650833), A POTENT, SELECTIVE JRNL TITL 5 INHIBITOR OF INTERLEUKIN-1 RECEPTOR ASSOCIATED KINASE 4 JRNL TITL 6 (IRAK4), BY FRAGMENT-BASED DRUG DESIGN. JRNL REF J. MED. CHEM. V. 60 5521 2017 JRNL REFN ISSN 1520-4804 JRNL PMID 28498658 JRNL DOI 10.1021/ACS.JMEDCHEM.7B00231 REMARK 2 REMARK 2 RESOLUTION. 2.02 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : BUSTER 2.11.2 REMARK 3 AUTHORS : BRICOGNE,BLANC,BRANDL,FLENSBURG,KELLER, REMARK 3 : PACIOREK,ROVERSI,SHARFF,SMART,VONRHEIN, REMARK 3 : WOMACK,MATTHEWS,TEN EYCK,TRONRUD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.02 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 75.49 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 3 NUMBER OF REFLECTIONS : 48890 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.186 REMARK 3 R VALUE (WORKING SET) : 0.185 REMARK 3 FREE R VALUE : 0.204 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.060 REMARK 3 FREE R VALUE TEST SET COUNT : 2472 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (ANGSTROMS) : 2.02 REMARK 3 BIN RESOLUTION RANGE LOW (ANGSTROMS) : 2.07 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.91 REMARK 3 REFLECTIONS IN BIN (WORKING + TEST SET) : 3606 REMARK 3 BIN R VALUE (WORKING + TEST SET) : 0.1958 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 3435 REMARK 3 BIN R VALUE (WORKING SET) : 0.1954 REMARK 3 BIN FREE R VALUE : 0.2034 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 4.74 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 171 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4561 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 52 REMARK 3 SOLVENT ATOMS : 393 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 37.41 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 46.34 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -2.06480 REMARK 3 B22 (A**2) : -6.60630 REMARK 3 B33 (A**2) : 8.67110 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.247 REMARK 3 DPI (BLOW EQ-10) BASED ON R VALUE (A) : 0.163 REMARK 3 DPI (BLOW EQ-9) BASED ON FREE R VALUE (A) : 0.134 REMARK 3 DPI (CRUICKSHANK) BASED ON R VALUE (A) : 0.156 REMARK 3 DPI (CRUICKSHANK) BASED ON FREE R VALUE (A) : 0.132 REMARK 3 REMARK 3 REFERENCES: BLOW, D. (2002) ACTA CRYST D58, 792-797 REMARK 3 CRUICKSHANK, D.W.J. (1999) ACTA CRYST D55, 583-601 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.944 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.932 REMARK 3 REMARK 3 NUMBER OF GEOMETRIC FUNCTION TERMS DEFINED : 15 REMARK 3 TERM COUNT WEIGHT FUNCTION. REMARK 3 BOND LENGTHS : 4750 ; 2.000 ; HARMONIC REMARK 3 BOND ANGLES : 6460 ; 2.000 ; HARMONIC REMARK 3 TORSION ANGLES : 1685 ; 2.000 ; SINUSOIDAL REMARK 3 TRIGONAL CARBON PLANES : 134 ; 2.000 ; HARMONIC REMARK 3 GENERAL PLANES : 719 ; 5.000 ; HARMONIC REMARK 3 ISOTROPIC THERMAL FACTORS : 4750 ; 20.000 ; HARMONIC REMARK 3 BAD NON-BONDED CONTACTS : NULL ; NULL ; NULL REMARK 3 IMPROPER TORSIONS : NULL ; NULL ; NULL REMARK 3 PSEUDOROTATION ANGLES : NULL ; NULL ; NULL REMARK 3 CHIRAL IMPROPER TORSION : 619 ; 5.000 ; SEMIHARMONIC REMARK 3 SUM OF OCCUPANCIES : NULL ; NULL ; NULL REMARK 3 UTILITY DISTANCES : NULL ; NULL ; NULL REMARK 3 UTILITY ANGLES : NULL ; NULL ; NULL REMARK 3 UTILITY TORSION : NULL ; NULL ; NULL REMARK 3 IDEAL-DIST CONTACT TERM : 5683 ; 4.000 ; SEMIHARMONIC REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.010 REMARK 3 BOND ANGLES (DEGREES) : 1.09 REMARK 3 PEPTIDE OMEGA TORSION ANGLES (DEGREES) : 2.88 REMARK 3 OTHER TORSION ANGLES (DEGREES) : 17.44 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: { A|* } REMARK 3 ORIGIN FOR THE GROUP (A): -27.5264 -31.9028 14.5714 REMARK 3 T TENSOR REMARK 3 T11: -0.2818 T22: -0.2233 REMARK 3 T33: -0.2729 T12: 0.0410 REMARK 3 T13: 0.0143 T23: 0.0184 REMARK 3 L TENSOR REMARK 3 L11: 2.1165 L22: 1.2706 REMARK 3 L33: 1.4566 L12: 0.6795 REMARK 3 L13: -0.2323 L23: -0.1086 REMARK 3 S TENSOR REMARK 3 S11: 0.0774 S12: -0.0515 S13: -0.1334 REMARK 3 S21: 0.1050 S22: -0.0446 S23: 0.1331 REMARK 3 S31: 0.0063 S32: -0.1807 S33: -0.0329 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: { B|* } REMARK 3 ORIGIN FOR THE GROUP (A): -11.8731 -24.8002 -15.5647 REMARK 3 T TENSOR REMARK 3 T11: -0.2174 T22: -0.2764 REMARK 3 T33: -0.2806 T12: -0.0296 REMARK 3 T13: -0.0381 T23: 0.0156 REMARK 3 L TENSOR REMARK 3 L11: 1.5240 L22: 1.0055 REMARK 3 L33: 2.2045 L12: -0.2281 REMARK 3 L13: 0.6991 L23: 0.2373 REMARK 3 S TENSOR REMARK 3 S11: -0.0896 S12: 0.1040 S13: 0.0750 REMARK 3 S21: -0.1204 S22: -0.0247 S23: 0.0816 REMARK 3 S31: -0.2943 S32: -0.0243 S33: 0.1143 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5UIU COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 18-JAN-17. REMARK 100 THE DEPOSITION ID IS D_1000225940. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 01-JAN-15 REMARK 200 TEMPERATURE (KELVIN) : 173 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 17-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS3 S 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 49042 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.020 REMARK 200 RESOLUTION RANGE LOW (A) : 75.500 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 6.600 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 23.4000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: NULL REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 51.33 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.53 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 1.6-1.8M AMMONIUM CITRATE, PH7.0, REMARK 280 VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 295K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: I 2 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X,Y,-Z REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z+1/2 REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 44.97000 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 59.23000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 69.42000 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 44.97000 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 59.23000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 69.42000 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 44.97000 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 59.23000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 69.42000 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 44.97000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 59.23000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 69.42000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 138 REMARK 465 HIS A 139 REMARK 465 HIS A 140 REMARK 465 HIS A 141 REMARK 465 HIS A 142 REMARK 465 HIS A 143 REMARK 465 HIS A 144 REMARK 465 GLY A 145 REMARK 465 GLY A 146 REMARK 465 GLU A 147 REMARK 465 ASN A 148 REMARK 465 LEU A 149 REMARK 465 TYR A 150 REMARK 465 PHE A 151 REMARK 465 GLN A 152 REMARK 465 GLY A 153 REMARK 465 GLU A 154 REMARK 465 ASN A 155 REMARK 465 LYS A 156 REMARK 465 SER A 157 REMARK 465 LEU A 158 REMARK 465 GLU A 159 REMARK 465 VAL A 160 REMARK 465 SER A 161 REMARK 465 ASP A 162 REMARK 465 THR A 163 REMARK 465 ARG A 164 REMARK 465 GLU A 337 REMARK 465 LYS A 338 REMARK 465 PHE A 339 REMARK 465 ALA A 340 REMARK 465 GLN A 341 REMARK 465 ALA A 459 REMARK 465 SER A 460 REMARK 465 MET B 138 REMARK 465 HIS B 139 REMARK 465 HIS B 140 REMARK 465 HIS B 141 REMARK 465 HIS B 142 REMARK 465 HIS B 143 REMARK 465 HIS B 144 REMARK 465 GLY B 145 REMARK 465 GLY B 146 REMARK 465 GLU B 147 REMARK 465 ASN B 148 REMARK 465 LEU B 149 REMARK 465 TYR B 150 REMARK 465 PHE B 151 REMARK 465 GLN B 152 REMARK 465 GLY B 153 REMARK 465 GLU B 154 REMARK 465 ASN B 155 REMARK 465 LYS B 156 REMARK 465 SER B 157 REMARK 465 LEU B 158 REMARK 465 GLU B 159 REMARK 465 VAL B 160 REMARK 465 SER B 161 REMARK 465 ASP B 162 REMARK 465 THR B 163 REMARK 465 GLU B 337 REMARK 465 LYS B 338 REMARK 465 PHE B 339 REMARK 465 ALA B 340 REMARK 465 GLN B 341 REMARK 465 ALA B 459 REMARK 465 SER B 460 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLN A 228 CG CD OE1 NE2 REMARK 470 GLN B 228 CG CD OE1 NE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 THR B 222 C - N - CA ANGL. DEV. = 17.4 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 181 98.43 -60.70 REMARK 500 ASN A 206 56.53 38.67 REMARK 500 ASP A 220 104.60 -33.24 REMARK 500 ARG A 310 -5.91 79.76 REMARK 500 ASP A 311 45.53 -144.52 REMARK 500 ASP A 329 86.68 57.40 REMARK 500 GLU A 406 15.57 56.54 REMARK 500 LYS A 417 38.05 -83.86 REMARK 500 ASP B 181 97.80 -59.55 REMARK 500 ASN B 206 -118.25 64.40 REMARK 500 ASP B 256 -19.57 77.26 REMARK 500 ARG B 310 -3.57 78.72 REMARK 500 ASP B 311 45.54 -146.08 REMARK 500 ASP B 329 85.65 66.57 REMARK 500 GLU B 406 14.94 56.85 REMARK 500 LYS B 417 38.34 -83.76 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A4289 DISTANCE = 5.87 ANGSTROMS REMARK 525 HOH A4290 DISTANCE = 5.94 ANGSTROMS REMARK 525 HOH A4291 DISTANCE = 6.27 ANGSTROMS REMARK 525 HOH A4292 DISTANCE = 6.94 ANGSTROMS REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue 8CG A 4000 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue 8CG B 4000 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 5UIQ RELATED DB: PDB REMARK 900 RELATED ID: 5UIR RELATED DB: PDB REMARK 900 RELATED ID: 5UIS RELATED DB: PDB REMARK 900 RELATED ID: 5UIT RELATED DB: PDB DBREF 5UIU A 154 460 UNP Q9NWZ3 IRAK4_HUMAN 154 460 DBREF 5UIU B 154 460 UNP Q9NWZ3 IRAK4_HUMAN 154 460 SEQADV 5UIU MET A 138 UNP Q9NWZ3 INITIATING METHIONINE SEQADV 5UIU HIS A 139 UNP Q9NWZ3 EXPRESSION TAG SEQADV 5UIU HIS A 140 UNP Q9NWZ3 EXPRESSION TAG SEQADV 5UIU HIS A 141 UNP Q9NWZ3 EXPRESSION TAG SEQADV 5UIU HIS A 142 UNP Q9NWZ3 EXPRESSION TAG SEQADV 5UIU HIS A 143 UNP Q9NWZ3 EXPRESSION TAG SEQADV 5UIU HIS A 144 UNP Q9NWZ3 EXPRESSION TAG SEQADV 5UIU GLY A 145 UNP Q9NWZ3 EXPRESSION TAG SEQADV 5UIU GLY A 146 UNP Q9NWZ3 EXPRESSION TAG SEQADV 5UIU GLU A 147 UNP Q9NWZ3 EXPRESSION TAG SEQADV 5UIU ASN A 148 UNP Q9NWZ3 EXPRESSION TAG SEQADV 5UIU LEU A 149 UNP Q9NWZ3 EXPRESSION TAG SEQADV 5UIU TYR A 150 UNP Q9NWZ3 EXPRESSION TAG SEQADV 5UIU PHE A 151 UNP Q9NWZ3 EXPRESSION TAG SEQADV 5UIU GLN A 152 UNP Q9NWZ3 EXPRESSION TAG SEQADV 5UIU GLY A 153 UNP Q9NWZ3 EXPRESSION TAG SEQADV 5UIU MET B 138 UNP Q9NWZ3 INITIATING METHIONINE SEQADV 5UIU HIS B 139 UNP Q9NWZ3 EXPRESSION TAG SEQADV 5UIU HIS B 140 UNP Q9NWZ3 EXPRESSION TAG SEQADV 5UIU HIS B 141 UNP Q9NWZ3 EXPRESSION TAG SEQADV 5UIU HIS B 142 UNP Q9NWZ3 EXPRESSION TAG SEQADV 5UIU HIS B 143 UNP Q9NWZ3 EXPRESSION TAG SEQADV 5UIU HIS B 144 UNP Q9NWZ3 EXPRESSION TAG SEQADV 5UIU GLY B 145 UNP Q9NWZ3 EXPRESSION TAG SEQADV 5UIU GLY B 146 UNP Q9NWZ3 EXPRESSION TAG SEQADV 5UIU GLU B 147 UNP Q9NWZ3 EXPRESSION TAG SEQADV 5UIU ASN B 148 UNP Q9NWZ3 EXPRESSION TAG SEQADV 5UIU LEU B 149 UNP Q9NWZ3 EXPRESSION TAG SEQADV 5UIU TYR B 150 UNP Q9NWZ3 EXPRESSION TAG SEQADV 5UIU PHE B 151 UNP Q9NWZ3 EXPRESSION TAG SEQADV 5UIU GLN B 152 UNP Q9NWZ3 EXPRESSION TAG SEQADV 5UIU GLY B 153 UNP Q9NWZ3 EXPRESSION TAG SEQRES 1 A 323 MET HIS HIS HIS HIS HIS HIS GLY GLY GLU ASN LEU TYR SEQRES 2 A 323 PHE GLN GLY GLU ASN LYS SER LEU GLU VAL SER ASP THR SEQRES 3 A 323 ARG PHE HIS SER PHE SER PHE TYR GLU LEU LYS ASN VAL SEQRES 4 A 323 THR ASN ASN PHE ASP GLU ARG PRO ILE SER VAL GLY GLY SEQRES 5 A 323 ASN LYS MET GLY GLU GLY GLY PHE GLY VAL VAL TYR LYS SEQRES 6 A 323 GLY TYR VAL ASN ASN THR THR VAL ALA VAL LYS LYS LEU SEQRES 7 A 323 ALA ALA MET VAL ASP ILE THR THR GLU GLU LEU LYS GLN SEQRES 8 A 323 GLN PHE ASP GLN GLU ILE LYS VAL MET ALA LYS CYS GLN SEQRES 9 A 323 HIS GLU ASN LEU VAL GLU LEU LEU GLY PHE SER SER ASP SEQRES 10 A 323 GLY ASP ASP LEU CYS LEU VAL TYR VAL TYR MET PRO ASN SEQRES 11 A 323 GLY SER LEU LEU ASP ARG LEU SER CYS LEU ASP GLY THR SEQRES 12 A 323 PRO PRO LEU SER TRP HIS MET ARG CYS LYS ILE ALA GLN SEQRES 13 A 323 GLY ALA ALA ASN GLY ILE ASN PHE LEU HIS GLU ASN HIS SEQRES 14 A 323 HIS ILE HIS ARG ASP ILE LYS SER ALA ASN ILE LEU LEU SEQRES 15 A 323 ASP GLU ALA PHE THR ALA LYS ILE SER ASP PHE GLY LEU SEQRES 16 A 323 ALA ARG ALA SER GLU LYS PHE ALA GLN TPO VAL MET TPO SEQRES 17 A 323 SEP ARG ILE VAL GLY THR THR ALA TYR MET ALA PRO GLU SEQRES 18 A 323 ALA LEU ARG GLY GLU ILE THR PRO LYS SER ASP ILE TYR SEQRES 19 A 323 SER PHE GLY VAL VAL LEU LEU GLU ILE ILE THR GLY LEU SEQRES 20 A 323 PRO ALA VAL ASP GLU HIS ARG GLU PRO GLN LEU LEU LEU SEQRES 21 A 323 ASP ILE LYS GLU GLU ILE GLU ASP GLU GLU LYS THR ILE SEQRES 22 A 323 GLU ASP TYR ILE ASP LYS LYS MET ASN ASP ALA ASP SER SEQRES 23 A 323 THR SER VAL GLU ALA MET TYR SER VAL ALA SER GLN CYS SEQRES 24 A 323 LEU HIS GLU LYS LYS ASN LYS ARG PRO ASP ILE LYS LYS SEQRES 25 A 323 VAL GLN GLN LEU LEU GLN GLU MET THR ALA SER SEQRES 1 B 323 MET HIS HIS HIS HIS HIS HIS GLY GLY GLU ASN LEU TYR SEQRES 2 B 323 PHE GLN GLY GLU ASN LYS SER LEU GLU VAL SER ASP THR SEQRES 3 B 323 ARG PHE HIS SER PHE SER PHE TYR GLU LEU LYS ASN VAL SEQRES 4 B 323 THR ASN ASN PHE ASP GLU ARG PRO ILE SER VAL GLY GLY SEQRES 5 B 323 ASN LYS MET GLY GLU GLY GLY PHE GLY VAL VAL TYR LYS SEQRES 6 B 323 GLY TYR VAL ASN ASN THR THR VAL ALA VAL LYS LYS LEU SEQRES 7 B 323 ALA ALA MET VAL ASP ILE THR THR GLU GLU LEU LYS GLN SEQRES 8 B 323 GLN PHE ASP GLN GLU ILE LYS VAL MET ALA LYS CYS GLN SEQRES 9 B 323 HIS GLU ASN LEU VAL GLU LEU LEU GLY PHE SER SER ASP SEQRES 10 B 323 GLY ASP ASP LEU CYS LEU VAL TYR VAL TYR MET PRO ASN SEQRES 11 B 323 GLY SER LEU LEU ASP ARG LEU SER CYS LEU ASP GLY THR SEQRES 12 B 323 PRO PRO LEU SER TRP HIS MET ARG CYS LYS ILE ALA GLN SEQRES 13 B 323 GLY ALA ALA ASN GLY ILE ASN PHE LEU HIS GLU ASN HIS SEQRES 14 B 323 HIS ILE HIS ARG ASP ILE LYS SER ALA ASN ILE LEU LEU SEQRES 15 B 323 ASP GLU ALA PHE THR ALA LYS ILE SER ASP PHE GLY LEU SEQRES 16 B 323 ALA ARG ALA SER GLU LYS PHE ALA GLN TPO VAL MET TPO SEQRES 17 B 323 SEP ARG ILE VAL GLY THR THR ALA TYR MET ALA PRO GLU SEQRES 18 B 323 ALA LEU ARG GLY GLU ILE THR PRO LYS SER ASP ILE TYR SEQRES 19 B 323 SER PHE GLY VAL VAL LEU LEU GLU ILE ILE THR GLY LEU SEQRES 20 B 323 PRO ALA VAL ASP GLU HIS ARG GLU PRO GLN LEU LEU LEU SEQRES 21 B 323 ASP ILE LYS GLU GLU ILE GLU ASP GLU GLU LYS THR ILE SEQRES 22 B 323 GLU ASP TYR ILE ASP LYS LYS MET ASN ASP ALA ASP SER SEQRES 23 B 323 THR SER VAL GLU ALA MET TYR SER VAL ALA SER GLN CYS SEQRES 24 B 323 LEU HIS GLU LYS LYS ASN LYS ARG PRO ASP ILE LYS LYS SEQRES 25 B 323 VAL GLN GLN LEU LEU GLN GLU MET THR ALA SER MODRES 5UIU TPO A 342 THR MODIFIED RESIDUE MODRES 5UIU TPO A 345 THR MODIFIED RESIDUE MODRES 5UIU SEP A 346 SER MODIFIED RESIDUE MODRES 5UIU TPO B 342 THR MODIFIED RESIDUE MODRES 5UIU TPO B 345 THR MODIFIED RESIDUE MODRES 5UIU SEP B 346 SER MODIFIED RESIDUE HET TPO A 342 11 HET TPO A 345 11 HET SEP A 346 10 HET TPO B 342 11 HET TPO B 345 11 HET SEP B 346 10 HET 8CG A4000 46 HET 8CG B4000 46 HETNAM TPO PHOSPHOTHREONINE HETNAM SEP PHOSPHOSERINE HETNAM 8CG 1-{[(2S,3S,4S)-3-ETHYL-4-FLUORO-5-OXOPYRROLIDIN-2- HETNAM 2 8CG YL]METHOXY}-7-METHOXYISOQUINOLINE-6-CARBOXAMIDE HETSYN TPO PHOSPHONOTHREONINE HETSYN SEP PHOSPHONOSERINE FORMUL 1 TPO 4(C4 H10 N O6 P) FORMUL 1 SEP 2(C3 H8 N O6 P) FORMUL 3 8CG 2(C18 H20 F N3 O4) FORMUL 5 HOH *393(H2 O) HELIX 1 AA1 SER A 169 THR A 177 1 9 HELIX 2 AA2 PRO A 184 GLY A 188 5 5 HELIX 3 AA3 THR A 222 CYS A 240 1 19 HELIX 4 AA4 SER A 269 CYS A 276 1 8 HELIX 5 AA5 LEU A 277 THR A 280 5 4 HELIX 6 AA6 SER A 284 ASN A 305 1 22 HELIX 7 AA7 LYS A 313 ALA A 315 5 3 HELIX 8 AA8 ALA A 356 ARG A 361 1 6 HELIX 9 AA9 PRO A 366 GLY A 383 1 18 HELIX 10 AB1 LEU A 397 ASP A 405 1 9 HELIX 11 AB2 THR A 409 TYR A 413 5 5 HELIX 12 AB3 ASP A 422 LEU A 437 1 16 HELIX 13 AB4 LYS A 440 ARG A 444 5 5 HELIX 14 AB5 ASP A 446 THR A 458 1 13 HELIX 15 AB6 SER B 169 THR B 177 1 9 HELIX 16 AB7 PRO B 184 GLY B 188 5 5 HELIX 17 AB8 THR B 222 CYS B 240 1 19 HELIX 18 AB9 SER B 269 CYS B 276 1 8 HELIX 19 AC1 LEU B 277 THR B 280 5 4 HELIX 20 AC2 SER B 284 ASN B 305 1 22 HELIX 21 AC3 LYS B 313 ALA B 315 5 3 HELIX 22 AC4 THR B 351 MET B 355 5 5 HELIX 23 AC5 ALA B 356 ARG B 361 1 6 HELIX 24 AC6 THR B 365 GLY B 383 1 19 HELIX 25 AC7 LEU B 395 LEU B 397 5 3 HELIX 26 AC8 ASP B 398 ASP B 405 1 8 HELIX 27 AC9 THR B 409 TYR B 413 5 5 HELIX 28 AD1 ASP B 422 LEU B 437 1 16 HELIX 29 AD2 LYS B 440 ARG B 444 5 5 HELIX 30 AD3 ASP B 446 THR B 458 1 13 SHEET 1 AA1 6 HIS A 166 SER A 167 0 SHEET 2 AA1 6 LEU A 248 SER A 252 1 O LEU A 249 N HIS A 166 SHEET 3 AA1 6 CYS A 259 VAL A 263 -1 O VAL A 261 N LEU A 249 SHEET 4 AA1 6 THR A 208 LEU A 215 -1 N LYS A 213 O LEU A 260 SHEET 5 AA1 6 GLY A 198 VAL A 205 -1 N TYR A 201 O VAL A 212 SHEET 6 AA1 6 LYS A 191 GLY A 195 -1 N MET A 192 O VAL A 200 SHEET 1 AA2 2 HIS A 307 ILE A 308 0 SHEET 2 AA2 2 ARG A 334 ALA A 335 -1 O ARG A 334 N ILE A 308 SHEET 1 AA3 2 ILE A 317 LEU A 319 0 SHEET 2 AA3 2 ALA A 325 ILE A 327 -1 O LYS A 326 N LEU A 318 SHEET 1 AA4 2 VAL A 343 MET A 344 0 SHEET 2 AA4 2 GLU A 363 ILE A 364 -1 O ILE A 364 N VAL A 343 SHEET 1 AA5 6 HIS B 166 SER B 167 0 SHEET 2 AA5 6 LEU B 248 ASP B 254 1 O LEU B 249 N HIS B 166 SHEET 3 AA5 6 ASP B 257 VAL B 263 -1 O VAL B 261 N GLY B 250 SHEET 4 AA5 6 THR B 208 LEU B 215 -1 N LEU B 215 O LEU B 258 SHEET 5 AA5 6 GLY B 198 VAL B 205 -1 N TYR B 201 O VAL B 212 SHEET 6 AA5 6 LYS B 191 GLY B 195 -1 N MET B 192 O VAL B 200 SHEET 1 AA6 2 HIS B 307 ILE B 308 0 SHEET 2 AA6 2 ARG B 334 ALA B 335 -1 O ARG B 334 N ILE B 308 SHEET 1 AA7 2 ILE B 317 LEU B 319 0 SHEET 2 AA7 2 ALA B 325 ILE B 327 -1 O LYS B 326 N LEU B 318 SHEET 1 AA8 2 VAL B 343 MET B 344 0 SHEET 2 AA8 2 GLU B 363 ILE B 364 -1 O ILE B 364 N VAL B 343 LINK C TPO A 342 N VAL A 343 1555 1555 1.35 LINK C MET A 344 N TPO A 345 1555 1555 1.33 LINK C TPO A 345 N SEP A 346 1555 1555 1.33 LINK C SEP A 346 N ARG A 347 1555 1555 1.35 LINK C TPO B 342 N VAL B 343 1555 1555 1.34 LINK C MET B 344 N TPO B 345 1555 1555 1.34 LINK C TPO B 345 N SEP B 346 1555 1555 1.33 LINK C SEP B 346 N ARG B 347 1555 1555 1.35 CISPEP 1 GLU A 392 PRO A 393 0 1.86 CISPEP 2 ILE B 221 THR B 222 0 -7.19 CISPEP 3 GLU B 392 PRO B 393 0 1.00 SITE 1 AC1 19 MET A 192 GLU A 194 GLY A 195 GLY A 198 SITE 2 AC1 19 VAL A 200 ALA A 211 LYS A 213 TYR A 262 SITE 3 AC1 19 VAL A 263 TYR A 264 MET A 265 GLY A 268 SITE 4 AC1 19 ALA A 315 ASN A 316 LEU A 318 SER A 328 SITE 5 AC1 19 ASP A 329 HOH A4129 HOH A4149 SITE 1 AC2 19 MET B 192 GLU B 194 GLY B 195 GLY B 198 SITE 2 AC2 19 VAL B 200 ALA B 211 LYS B 213 TYR B 262 SITE 3 AC2 19 VAL B 263 TYR B 264 MET B 265 GLY B 268 SITE 4 AC2 19 ALA B 315 ASN B 316 LEU B 318 SER B 328 SITE 5 AC2 19 ASP B 329 HOH B4113 HOH B4175 CRYST1 89.940 118.460 138.840 90.00 90.00 90.00 I 2 2 2 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.011119 0.000000 0.000000 0.00000 SCALE2 0.000000 0.008442 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007203 0.00000