HEADER GENE REGULATION 17-JAN-17 5UJD TITLE SBNI FROM STAPHYLOCOCCUS PSEUDINTERMEDIUS COMPND MOL_ID: 1; COMPND 2 MOLECULE: SIDEROPHORE BIOSYNTHESIS PROTEIN SBNI; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: SIDEROPHORE STAPHYLOBACTIN BIOSYNTHESIS PROTEIN SBNI; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: STAPHYLOCOCCUS PSEUDINTERMEDIUS; SOURCE 3 ORGANISM_TAXID: 283734; SOURCE 4 GENE: A6M57_10935, NO89_04550; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 8 EXPRESSION_SYSTEM_PLASMID: PET28A KEYWDS STAPHYLOFERRIN B, HEME, REGULATOR, SIDEROPHORE, GENE REGULATION EXPDTA X-RAY DIFFRACTION AUTHOR M.E.P.MURPHY,M.M.VERSTRAETE REVDAT 4 04-OCT-23 5UJD 1 REMARK REVDAT 3 30-DEC-20 5UJD 1 JRNL SSBOND REVDAT 2 08-JAN-20 5UJD 1 REMARK REVDAT 1 24-JAN-18 5UJD 0 JRNL AUTH M.M.VERSTRAETE,L.D.MORALES,M.J.KOBYLARZ,S.A.LOUTET, JRNL AUTH 2 H.A.LAAKSO,T.B.PINTER,M.J.STILLMAN,D.E.HEINRICHS, JRNL AUTH 3 M.E.P.MURPHY JRNL TITL THE HEME-SENSITIVE REGULATOR SBNI HAS A BIFUNCTIONAL ROLE IN JRNL TITL 2 STAPHYLOFERRIN B PRODUCTION BY STAPHYLOCOCCUS AUREUS . JRNL REF J.BIOL.CHEM. V. 294 11622 2019 JRNL REFN ESSN 1083-351X JRNL PMID 31197035 JRNL DOI 10.1074/JBC.RA119.007757 REMARK 2 REMARK 2 RESOLUTION. 2.10 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.10.1_2155 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.10 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 46.62 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.360 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 3 NUMBER OF REFLECTIONS : 35385 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.220 REMARK 3 R VALUE (WORKING SET) : 0.218 REMARK 3 FREE R VALUE : 0.260 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.980 REMARK 3 FREE R VALUE TEST SET COUNT : 1761 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 46.6341 - 4.9358 1.00 2766 146 0.2060 0.2287 REMARK 3 2 4.9358 - 3.9183 1.00 2652 139 0.1633 0.1868 REMARK 3 3 3.9183 - 3.4232 1.00 2605 136 0.1974 0.2364 REMARK 3 4 3.4232 - 3.1103 1.00 2596 137 0.2322 0.2745 REMARK 3 5 3.1103 - 2.8874 1.00 2593 136 0.2674 0.3477 REMARK 3 6 2.8874 - 2.7172 1.00 2551 134 0.2383 0.3194 REMARK 3 7 2.7172 - 2.5811 1.00 2590 133 0.2523 0.3484 REMARK 3 8 2.5811 - 2.4688 1.00 2556 135 0.2567 0.3160 REMARK 3 9 2.4688 - 2.3737 1.00 2545 134 0.2674 0.3188 REMARK 3 10 2.3737 - 2.2918 1.00 2575 136 0.2500 0.3306 REMARK 3 11 2.2918 - 2.2202 1.00 2544 132 0.2534 0.2875 REMARK 3 12 2.2202 - 2.1567 1.00 2548 135 0.2660 0.3221 REMARK 3 13 2.1567 - 2.0999 0.99 2503 128 0.2786 0.2952 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.280 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 29.510 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 39.30 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 67.51 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.004 4248 REMARK 3 ANGLE : 0.682 5765 REMARK 3 CHIRALITY : 0.046 651 REMARK 3 PLANARITY : 0.004 733 REMARK 3 DIHEDRAL : 15.517 2578 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 11 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 1 THROUGH 108 ) REMARK 3 ORIGIN FOR THE GROUP (A): 98.7143 7.0499 58.0679 REMARK 3 T TENSOR REMARK 3 T11: 0.2324 T22: 0.2452 REMARK 3 T33: 0.3014 T12: -0.0483 REMARK 3 T13: 0.0328 T23: 0.0074 REMARK 3 L TENSOR REMARK 3 L11: 1.1709 L22: 1.0503 REMARK 3 L33: 0.5336 L12: -0.3957 REMARK 3 L13: 0.2438 L23: -0.8065 REMARK 3 S TENSOR REMARK 3 S11: 0.1613 S12: 0.0786 S13: 0.1065 REMARK 3 S21: -0.0041 S22: -0.1037 S23: -0.1569 REMARK 3 S31: 0.1761 S32: 0.1222 S33: 0.0350 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 109 THROUGH 173 ) REMARK 3 ORIGIN FOR THE GROUP (A): 83.6649 24.8182 59.1195 REMARK 3 T TENSOR REMARK 3 T11: 0.5114 T22: 0.3612 REMARK 3 T33: 0.4919 T12: 0.0750 REMARK 3 T13: 0.1087 T23: 0.0013 REMARK 3 L TENSOR REMARK 3 L11: 2.3474 L22: 1.3795 REMARK 3 L33: 0.7149 L12: -0.0472 REMARK 3 L13: -0.3164 L23: 0.2503 REMARK 3 S TENSOR REMARK 3 S11: -0.0696 S12: -0.1902 S13: 0.2849 REMARK 3 S21: 0.4656 S22: 0.1193 S23: 0.4821 REMARK 3 S31: -0.3609 S32: -0.0115 S33: -0.0079 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 174 THROUGH 254 ) REMARK 3 ORIGIN FOR THE GROUP (A): 97.9464 0.8354 62.0279 REMARK 3 T TENSOR REMARK 3 T11: 0.2824 T22: 0.2570 REMARK 3 T33: 0.2987 T12: -0.0098 REMARK 3 T13: 0.0070 T23: -0.0181 REMARK 3 L TENSOR REMARK 3 L11: 1.2373 L22: 1.4941 REMARK 3 L33: 1.3904 L12: -0.3286 REMARK 3 L13: -0.1644 L23: -0.1466 REMARK 3 S TENSOR REMARK 3 S11: 0.1467 S12: -0.0960 S13: -0.1570 REMARK 3 S21: -0.0997 S22: -0.0361 S23: 0.0018 REMARK 3 S31: 0.2091 S32: -0.0160 S33: 0.0000 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 1 THROUGH 53 ) REMARK 3 ORIGIN FOR THE GROUP (A): 101.7788 -2.5639 92.6730 REMARK 3 T TENSOR REMARK 3 T11: 0.3801 T22: 0.3550 REMARK 3 T33: 0.3234 T12: 0.1032 REMARK 3 T13: -0.0270 T23: -0.0340 REMARK 3 L TENSOR REMARK 3 L11: 1.1049 L22: 0.5132 REMARK 3 L33: 0.5787 L12: 0.6892 REMARK 3 L13: 0.5207 L23: 0.1261 REMARK 3 S TENSOR REMARK 3 S11: 0.0926 S12: -0.1203 S13: -0.0074 REMARK 3 S21: 0.1011 S22: 0.1842 S23: -0.0998 REMARK 3 S31: 0.0021 S32: 0.2426 S33: 0.0098 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 54 THROUGH 93 ) REMARK 3 ORIGIN FOR THE GROUP (A): 95.9541 -5.4640 92.5730 REMARK 3 T TENSOR REMARK 3 T11: 0.3578 T22: 0.3315 REMARK 3 T33: 0.2934 T12: 0.0839 REMARK 3 T13: -0.0425 T23: -0.0142 REMARK 3 L TENSOR REMARK 3 L11: 0.8040 L22: 0.5094 REMARK 3 L33: 0.9808 L12: -0.1935 REMARK 3 L13: -0.6527 L23: -0.3192 REMARK 3 S TENSOR REMARK 3 S11: 0.1476 S12: -0.0263 S13: 0.0632 REMARK 3 S21: 0.1287 S22: 0.0018 S23: 0.0097 REMARK 3 S31: 0.0563 S32: 0.2005 S33: -0.0000 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 94 THROUGH 108 ) REMARK 3 ORIGIN FOR THE GROUP (A): 87.6492 -35.7487 91.8640 REMARK 3 T TENSOR REMARK 3 T11: 0.6454 T22: 0.5338 REMARK 3 T33: 0.5706 T12: 0.2511 REMARK 3 T13: -0.0817 T23: -0.0819 REMARK 3 L TENSOR REMARK 3 L11: 0.7524 L22: 0.2731 REMARK 3 L33: 0.1676 L12: 0.4593 REMARK 3 L13: -0.0175 L23: 0.0610 REMARK 3 S TENSOR REMARK 3 S11: -0.7492 S12: 0.0676 S13: 0.0509 REMARK 3 S21: 0.9220 S22: 0.5212 S23: -0.6369 REMARK 3 S31: -0.0701 S32: 0.0692 S33: -0.0617 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 109 THROUGH 152 ) REMARK 3 ORIGIN FOR THE GROUP (A): 79.0092 -25.8698 96.7784 REMARK 3 T TENSOR REMARK 3 T11: 0.6202 T22: 0.4448 REMARK 3 T33: 0.6564 T12: 0.0323 REMARK 3 T13: 0.0372 T23: 0.0040 REMARK 3 L TENSOR REMARK 3 L11: 0.8949 L22: 0.5873 REMARK 3 L33: 1.1789 L12: -0.2204 REMARK 3 L13: -0.0737 L23: -0.3496 REMARK 3 S TENSOR REMARK 3 S11: 0.1291 S12: 0.3217 S13: -0.3299 REMARK 3 S21: 0.4122 S22: -0.0312 S23: 0.6698 REMARK 3 S31: 0.5300 S32: 0.1152 S33: 0.0035 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 153 THROUGH 192 ) REMARK 3 ORIGIN FOR THE GROUP (A): 85.2721 -18.6048 89.9320 REMARK 3 T TENSOR REMARK 3 T11: 0.4458 T22: 0.4358 REMARK 3 T33: 0.4035 T12: 0.1117 REMARK 3 T13: -0.1251 T23: -0.0800 REMARK 3 L TENSOR REMARK 3 L11: 1.6253 L22: 1.3029 REMARK 3 L33: 0.7040 L12: 1.0965 REMARK 3 L13: -0.2161 L23: -0.8702 REMARK 3 S TENSOR REMARK 3 S11: -0.0141 S12: 0.1326 S13: -0.1263 REMARK 3 S21: -0.4096 S22: -0.0765 S23: 0.3777 REMARK 3 S31: -0.1511 S32: 0.0314 S33: 0.0000 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 193 THROUGH 223 ) REMARK 3 ORIGIN FOR THE GROUP (A): 100.7876 -2.5875 91.1205 REMARK 3 T TENSOR REMARK 3 T11: 0.4158 T22: 0.4840 REMARK 3 T33: 0.3742 T12: 0.0793 REMARK 3 T13: -0.0495 T23: -0.0548 REMARK 3 L TENSOR REMARK 3 L11: 0.4405 L22: 0.2957 REMARK 3 L33: 0.1615 L12: -0.3019 REMARK 3 L13: -0.4345 L23: 0.1376 REMARK 3 S TENSOR REMARK 3 S11: -0.0215 S12: -0.0481 S13: -0.2899 REMARK 3 S21: 0.2626 S22: 0.1361 S23: -0.2423 REMARK 3 S31: 0.2827 S32: 0.2703 S33: -0.0000 REMARK 3 TLS GROUP : 10 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 224 THROUGH 240 ) REMARK 3 ORIGIN FOR THE GROUP (A): 107.9131 12.2738 88.0185 REMARK 3 T TENSOR REMARK 3 T11: 0.4432 T22: 0.4519 REMARK 3 T33: 0.5509 T12: -0.1034 REMARK 3 T13: -0.0200 T23: -0.0602 REMARK 3 L TENSOR REMARK 3 L11: 0.0724 L22: 0.0283 REMARK 3 L33: 0.0498 L12: 0.0236 REMARK 3 L13: 0.0034 L23: -0.0475 REMARK 3 S TENSOR REMARK 3 S11: -0.1433 S12: 0.3060 S13: 0.6220 REMARK 3 S21: -0.0131 S22: -0.0980 S23: 0.0877 REMARK 3 S31: -0.6769 S32: 0.6019 S33: -0.0003 REMARK 3 TLS GROUP : 11 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 241 THROUGH 254 ) REMARK 3 ORIGIN FOR THE GROUP (A): 97.0833 -0.3316 73.5918 REMARK 3 T TENSOR REMARK 3 T11: 0.4093 T22: 0.4262 REMARK 3 T33: 0.3572 T12: 0.0439 REMARK 3 T13: -0.0006 T23: 0.0656 REMARK 3 L TENSOR REMARK 3 L11: -0.0072 L22: 0.1457 REMARK 3 L33: 0.1791 L12: 0.0924 REMARK 3 L13: -0.0160 L23: 0.0720 REMARK 3 S TENSOR REMARK 3 S11: -0.2320 S12: 0.0154 S13: 0.3322 REMARK 3 S21: 0.3492 S22: 0.3943 S23: -0.0263 REMARK 3 S31: -0.2267 S32: 0.0246 S33: 0.0000 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5UJD COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 18-JAN-17. REMARK 100 THE DEPOSITION ID IS D_1000225776. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 20-MAY-16 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : CLSI REMARK 200 BEAMLINE : 08B1-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9795 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : RAYONIX MX300HE REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 35480 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.100 REMARK 200 RESOLUTION RANGE LOW (A) : 46.623 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 200 DATA REDUNDANCY : 8.987 REMARK 200 R MERGE (I) : 0.08200 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 16.9100 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.10 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.15 REMARK 200 COMPLETENESS FOR SHELL (%) : 98.8 REMARK 200 DATA REDUNDANCY IN SHELL : 8.42 REMARK 200 R MERGE FOR SHELL (I) : 0.99600 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.110 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHENIX REMARK 200 STARTING MODEL: 5UJE REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 51.38 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.53 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 4 M SODIUM FORMATE, VAPOR DIFFUSION, REMARK 280 SITTING DROP, TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X+1/2,Y+1/2,-Z REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 39.38000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 55.69500 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 39.38000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 55.69500 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 4000 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 25000 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -22.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 422 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 457 LIES ON A SPECIAL POSITION. REMARK 375 HOH B 441 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A -1 REMARK 465 SER A 0 REMARK 465 GLY B -1 REMARK 465 SER B 0 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 HG1 THR A 201 O HOH A 401 1.50 REMARK 500 OH TYR A 152 HH TYR A 178 1.53 REMARK 500 HH22 ARG B 41 OE1 GLU B 254 1.56 REMARK 500 OE2 GLU B 113 HE ARG B 115 1.58 REMARK 500 O CYS A 99 OG1 THR A 103 1.92 REMARK 500 OG1 THR A 201 O HOH A 401 2.01 REMARK 500 NH2 ARG B 41 OE1 GLU B 254 2.04 REMARK 500 O VAL B 134 O HOH B 401 2.09 REMARK 500 O HOH B 425 O HOH B 447 2.09 REMARK 500 O HOH A 410 O HOH A 462 2.13 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 OG1 THR A 138 O ALA B 135 2754 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 THR A 49 -112.34 -117.39 REMARK 500 GLU A 117 -177.99 -63.45 REMARK 500 ASN A 211 42.60 70.84 REMARK 500 THR B 49 -130.96 -121.21 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue FMT A 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue FMT A 302 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue FMT B 301 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 5UJE RELATED DB: PDB DBREF1 5UJD A 1 254 UNP A0A166Q2C7_STAPS DBREF2 5UJD A A0A166Q2C7 1 254 DBREF1 5UJD B 1 254 UNP A0A166Q2C7_STAPS DBREF2 5UJD B A0A166Q2C7 1 254 SEQADV 5UJD GLY A -1 UNP A0A166Q2C EXPRESSION TAG SEQADV 5UJD SER A 0 UNP A0A166Q2C EXPRESSION TAG SEQADV 5UJD GLY B -1 UNP A0A166Q2C EXPRESSION TAG SEQADV 5UJD SER B 0 UNP A0A166Q2C EXPRESSION TAG SEQRES 1 A 256 GLY SER MET LYS GLN ILE TYR ASP THR LEU GLN LEU ILE SEQRES 2 A 256 PRO VAL ASP LYS ILE ASP LEU HIS GLU ALA PHE GLU PRO SEQRES 3 A 256 SER ARG LEU GLU LYS THR LYS GLU SER ILE ALA LYS GLU SEQRES 4 A 256 GLN HIS LEU ARG HIS PRO VAL LEU VAL VAL LYS THR LEU SEQRES 5 A 256 PHE GLY ARG TYR MET VAL ILE ASP GLY VAL HIS ARG PHE SEQRES 6 A 256 MET SER LEU LYS ALA LEU GLY CYS GLU VAL ILE PRO VAL SEQRES 7 A 256 GLN VAL ILE GLN ARG THR GLN TYR SER ILE GLY SER TRP SEQRES 8 A 256 HIS HIS LYS ILE PRO ASN GLY ALA TRP CYS GLU GLY LEU SEQRES 9 A 256 THR ASP GLU GLU LEU LEU PRO TRP THR THR GLU VAL ARG SEQRES 10 A 256 ASP GLU THR PRO PHE ILE THR MET CYS ASP GLN GLN THR SEQRES 11 A 256 GLU HIS TYR LEU TYR VAL ALA ASP LEU THR VAL ASP LYS SEQRES 12 A 256 LEU ASP ILE TRP LYS LYS VAL VAL ASN SER TYR SER ALA SEQRES 13 A 256 SER CYS ASN VAL GLU ARG VAL PRO HIS SER ALA CYS LEU SEQRES 14 A 256 CYS LEU ASP SER ASN ASP ILE LEU MET LYS TYR GLN PRO SEQRES 15 A 256 LEU GLN ILE GLY GLU ILE GLU ALA VAL VAL GLN ARG GLY SEQRES 16 A 256 GLN THR VAL PRO ALA GLY VAL THR ARG PHE ASN ILE ALA SEQRES 17 A 256 GLY ARG CYS LEU ASN LEU GLN VAL PRO LEU HIS LEU LEU SEQRES 18 A 256 LYS ASN SER ASN LEU GLY ASN GLN GLU GLN TRP HIS THR SEQRES 19 A 256 PHE LEU GLN LYS LYS ILE GLU SER MET ARG CYS TYR THR SEQRES 20 A 256 GLU LYS ILE TYR LEU ILE GLU ALA GLU SEQRES 1 B 256 GLY SER MET LYS GLN ILE TYR ASP THR LEU GLN LEU ILE SEQRES 2 B 256 PRO VAL ASP LYS ILE ASP LEU HIS GLU ALA PHE GLU PRO SEQRES 3 B 256 SER ARG LEU GLU LYS THR LYS GLU SER ILE ALA LYS GLU SEQRES 4 B 256 GLN HIS LEU ARG HIS PRO VAL LEU VAL VAL LYS THR LEU SEQRES 5 B 256 PHE GLY ARG TYR MET VAL ILE ASP GLY VAL HIS ARG PHE SEQRES 6 B 256 MET SER LEU LYS ALA LEU GLY CYS GLU VAL ILE PRO VAL SEQRES 7 B 256 GLN VAL ILE GLN ARG THR GLN TYR SER ILE GLY SER TRP SEQRES 8 B 256 HIS HIS LYS ILE PRO ASN GLY ALA TRP CYS GLU GLY LEU SEQRES 9 B 256 THR ASP GLU GLU LEU LEU PRO TRP THR THR GLU VAL ARG SEQRES 10 B 256 ASP GLU THR PRO PHE ILE THR MET CYS ASP GLN GLN THR SEQRES 11 B 256 GLU HIS TYR LEU TYR VAL ALA ASP LEU THR VAL ASP LYS SEQRES 12 B 256 LEU ASP ILE TRP LYS LYS VAL VAL ASN SER TYR SER ALA SEQRES 13 B 256 SER CYS ASN VAL GLU ARG VAL PRO HIS SER ALA CYS LEU SEQRES 14 B 256 CYS LEU ASP SER ASN ASP ILE LEU MET LYS TYR GLN PRO SEQRES 15 B 256 LEU GLN ILE GLY GLU ILE GLU ALA VAL VAL GLN ARG GLY SEQRES 16 B 256 GLN THR VAL PRO ALA GLY VAL THR ARG PHE ASN ILE ALA SEQRES 17 B 256 GLY ARG CYS LEU ASN LEU GLN VAL PRO LEU HIS LEU LEU SEQRES 18 B 256 LYS ASN SER ASN LEU GLY ASN GLN GLU GLN TRP HIS THR SEQRES 19 B 256 PHE LEU GLN LYS LYS ILE GLU SER MET ARG CYS TYR THR SEQRES 20 B 256 GLU LYS ILE TYR LEU ILE GLU ALA GLU HET FMT A 301 4 HET FMT A 302 4 HET FMT B 301 4 HETNAM FMT FORMIC ACID FORMUL 3 FMT 3(C H2 O2) FORMUL 6 HOH *114(H2 O) HELIX 1 AA1 MET A 1 ASP A 6 1 6 HELIX 2 AA2 GLU A 23 GLN A 38 1 16 HELIX 3 AA3 GLY A 59 LEU A 69 1 11 HELIX 4 AA4 GLN A 80 THR A 82 5 3 HELIX 5 AA5 ASN A 95 TRP A 98 5 4 HELIX 6 AA6 CYS A 99 ASP A 104 1 6 HELIX 7 AA7 ASP A 140 SER A 153 1 14 HELIX 8 AA8 GLN A 182 ARG A 192 1 11 HELIX 9 AA9 HIS A 217 LYS A 220 5 4 HELIX 10 AB1 ASN A 223 GLU A 239 1 17 HELIX 11 AB2 LYS B 2 THR B 7 1 6 HELIX 12 AB3 GLU B 23 GLN B 38 1 16 HELIX 13 AB4 GLY B 59 LEU B 69 1 11 HELIX 14 AB5 GLN B 80 THR B 82 5 3 HELIX 15 AB6 ASN B 95 TRP B 98 5 4 HELIX 16 AB7 CYS B 99 ASP B 104 1 6 HELIX 17 AB8 TYR B 133 LEU B 137 5 5 HELIX 18 AB9 ASP B 140 SER B 153 1 14 HELIX 19 AC1 GLN B 182 ARG B 192 1 11 HELIX 20 AC2 HIS B 217 LEU B 219 5 3 HELIX 21 AC3 ASN B 223 GLU B 239 1 17 SHEET 1 AA1 5 LEU A 8 PRO A 12 0 SHEET 2 AA1 5 VAL A 73 VAL A 78 -1 O VAL A 76 N GLN A 9 SHEET 3 AA1 5 VAL A 44 LYS A 48 1 N VAL A 44 O GLN A 77 SHEET 4 AA1 5 TYR A 54 ASP A 58 -1 O ILE A 57 N LEU A 45 SHEET 5 AA1 5 ILE A 16 ASP A 17 1 N ASP A 17 O TYR A 54 SHEET 1 AA2 2 HIS A 39 LEU A 40 0 SHEET 2 AA2 2 VAL A 214 PRO A 215 -1 O VAL A 214 N LEU A 40 SHEET 1 AA3 5 GLU A 129 LEU A 132 0 SHEET 2 AA3 5 ILE A 121 CYS A 124 -1 N MET A 123 O HIS A 130 SHEET 3 AA3 5 ILE A 174 TYR A 178 -1 O LYS A 177 N THR A 122 SHEET 4 AA3 5 TYR A 84 ILE A 93 -1 N ILE A 93 O ILE A 174 SHEET 5 AA3 5 GLU A 159 PRO A 162 -1 O VAL A 161 N HIS A 90 SHEET 1 AA4 5 GLU A 129 LEU A 132 0 SHEET 2 AA4 5 ILE A 121 CYS A 124 -1 N MET A 123 O HIS A 130 SHEET 3 AA4 5 ILE A 174 TYR A 178 -1 O LYS A 177 N THR A 122 SHEET 4 AA4 5 TYR A 84 ILE A 93 -1 N ILE A 93 O ILE A 174 SHEET 5 AA4 5 THR A 201 ILE A 205 -1 O ARG A 202 N GLY A 87 SHEET 1 AA5 3 ARG A 208 LEU A 210 0 SHEET 2 AA5 3 ILE B 248 ILE B 251 1 O TYR B 249 N ARG A 208 SHEET 3 AA5 3 MET A 241 TYR A 244 -1 N TYR A 244 O ILE B 248 SHEET 1 AA6 3 ARG B 208 LEU B 210 0 SHEET 2 AA6 3 ILE A 248 ILE A 251 1 N TYR A 249 O LEU B 210 SHEET 3 AA6 3 MET B 241 TYR B 244 -1 O ARG B 242 N LEU A 250 SHEET 1 AA7 5 LEU B 8 PRO B 12 0 SHEET 2 AA7 5 VAL B 73 VAL B 78 -1 O VAL B 76 N GLN B 9 SHEET 3 AA7 5 VAL B 44 LYS B 48 1 N VAL B 44 O GLN B 77 SHEET 4 AA7 5 TYR B 54 ASP B 58 -1 O ILE B 57 N LEU B 45 SHEET 5 AA7 5 ILE B 16 ASP B 17 1 N ASP B 17 O TYR B 54 SHEET 1 AA8 2 HIS B 39 LEU B 40 0 SHEET 2 AA8 2 VAL B 214 PRO B 215 -1 O VAL B 214 N LEU B 40 SHEET 1 AA9 5 GLU B 129 LEU B 132 0 SHEET 2 AA9 5 ILE B 121 CYS B 124 -1 N MET B 123 O HIS B 130 SHEET 3 AA9 5 ILE B 174 TYR B 178 -1 O LYS B 177 N THR B 122 SHEET 4 AA9 5 TYR B 84 ILE B 93 -1 N ILE B 93 O ILE B 174 SHEET 5 AA9 5 GLU B 159 PRO B 162 -1 O VAL B 161 N HIS B 90 SHEET 1 AB1 5 GLU B 129 LEU B 132 0 SHEET 2 AB1 5 ILE B 121 CYS B 124 -1 N MET B 123 O HIS B 130 SHEET 3 AB1 5 ILE B 174 TYR B 178 -1 O LYS B 177 N THR B 122 SHEET 4 AB1 5 TYR B 84 ILE B 93 -1 N ILE B 93 O ILE B 174 SHEET 5 AB1 5 THR B 201 ILE B 205 -1 O ARG B 202 N GLY B 87 SSBOND 1 CYS A 99 CYS A 156 1555 1555 2.01 SSBOND 2 CYS A 166 CYS B 166 1555 2755 2.03 SSBOND 3 CYS A 168 CYS B 168 1555 2755 2.04 SSBOND 4 CYS B 99 CYS B 156 1555 1555 2.04 SITE 1 AC1 7 PHE A 203 ASN A 204 ILE A 205 ARG A 208 SITE 2 AC1 7 HOH A 413 HOH A 432 HOH B 411 SITE 1 AC2 7 ARG A 26 GLY A 59 VAL A 60 HIS A 61 SITE 2 AC2 7 ARG A 62 HOH A 406 HOH A 409 SITE 1 AC3 6 PHE B 203 ASN B 204 ILE B 205 ARG B 208 SITE 2 AC3 6 HOH B 409 HOH B 434 CRYST1 78.760 111.390 67.690 90.00 90.00 90.00 P 21 21 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.012697 0.000000 0.000000 0.00000 SCALE2 0.000000 0.008977 0.000000 0.00000 SCALE3 0.000000 0.000000 0.014773 0.00000