data_5UJL # _entry.id 5UJL # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.371 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 5UJL pdb_00005ujl 10.2210/pdb5ujl/pdb WWPDB D_1000225872 ? ? BMRB 30234 ? ? # _pdbx_database_related.db_name BMRB _pdbx_database_related.details 'Representative 1-conformer ensembles of K27-linked Ub2 from RDC data' _pdbx_database_related.db_id 30234 _pdbx_database_related.content_type unspecified # _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf ? _pdbx_database_status.status_code_mr REL _pdbx_database_status.entry_id 5UJL _pdbx_database_status.recvd_initial_deposition_date 2017-01-18 _pdbx_database_status.SG_entry N _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.status_code_cs REL _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_nmr_data REL # loop_ _audit_author.name _audit_author.pdbx_ordinal _audit_author.identifier_ORCID 'Castaneda, C.A.' 1 ? 'Fushman, D.' 2 ? # _citation.abstract ? _citation.abstract_id_CAS ? _citation.book_id_ISBN ? _citation.book_publisher ? _citation.book_publisher_city ? _citation.book_title ? _citation.coordinate_linkage ? _citation.country UK _citation.database_id_Medline ? _citation.details ? _citation.id primary _citation.journal_abbrev Structure _citation.journal_id_ASTM STRUE6 _citation.journal_id_CSD 2005 _citation.journal_id_ISSN 1878-4186 _citation.journal_full ? _citation.journal_issue ? _citation.journal_volume 24 _citation.language ? _citation.page_first 423 _citation.page_last 436 _citation.title 'Linkage via K27 Bestows Ubiquitin Chains with Unique Properties among Polyubiquitins.' _citation.year 2016 _citation.database_id_CSD ? _citation.pdbx_database_id_DOI 10.1016/j.str.2016.01.007 _citation.pdbx_database_id_PubMed 26876099 _citation.unpublished_flag ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Castaneda, C.A.' 1 ? primary 'Dixon, E.K.' 2 ? primary 'Walker, O.' 3 ? primary 'Chaturvedi, A.' 4 ? primary 'Nakasone, M.A.' 5 ? primary 'Curtis, J.E.' 6 ? primary 'Reed, M.R.' 7 ? primary 'Krueger, S.' 8 ? primary 'Cropp, T.A.' 9 ? primary 'Fushman, D.' 10 ? # _entity.id 1 _entity.type polymer _entity.src_method man _entity.pdbx_description Ubiquitin _entity.formula_weight 8576.831 _entity.pdbx_number_of_molecules 2 _entity.pdbx_ec ? _entity.pdbx_mutation ? _entity.pdbx_fragment 'residues 1-76' _entity.details ? # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG _entity_poly.pdbx_seq_one_letter_code_can MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG _entity_poly.pdbx_strand_id A,B _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 MET n 1 2 GLN n 1 3 ILE n 1 4 PHE n 1 5 VAL n 1 6 LYS n 1 7 THR n 1 8 LEU n 1 9 THR n 1 10 GLY n 1 11 LYS n 1 12 THR n 1 13 ILE n 1 14 THR n 1 15 LEU n 1 16 GLU n 1 17 VAL n 1 18 GLU n 1 19 PRO n 1 20 SER n 1 21 ASP n 1 22 THR n 1 23 ILE n 1 24 GLU n 1 25 ASN n 1 26 VAL n 1 27 LYS n 1 28 ALA n 1 29 LYS n 1 30 ILE n 1 31 GLN n 1 32 ASP n 1 33 LYS n 1 34 GLU n 1 35 GLY n 1 36 ILE n 1 37 PRO n 1 38 PRO n 1 39 ASP n 1 40 GLN n 1 41 GLN n 1 42 ARG n 1 43 LEU n 1 44 ILE n 1 45 PHE n 1 46 ALA n 1 47 GLY n 1 48 LYS n 1 49 GLN n 1 50 LEU n 1 51 GLU n 1 52 ASP n 1 53 GLY n 1 54 ARG n 1 55 THR n 1 56 LEU n 1 57 SER n 1 58 ASP n 1 59 TYR n 1 60 ASN n 1 61 ILE n 1 62 GLN n 1 63 LYS n 1 64 GLU n 1 65 SER n 1 66 THR n 1 67 LEU n 1 68 HIS n 1 69 LEU n 1 70 VAL n 1 71 LEU n 1 72 ARG n 1 73 LEU n 1 74 ARG n 1 75 GLY n 1 76 GLY n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type 'Biological sequence' _entity_src_gen.pdbx_beg_seq_num 1 _entity_src_gen.pdbx_end_seq_num 76 _entity_src_gen.gene_src_common_name Human _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene UBB _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Homo sapiens' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 9606 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 562 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain ? _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type ? _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name ? _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code UBB_HUMAN _struct_ref.pdbx_db_accession P0CG47 _struct_ref.pdbx_db_isoform ? _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG _struct_ref.pdbx_align_begin 1 # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 5UJL A 1 ? 76 ? P0CG47 1 ? 76 ? 1 76 2 1 5UJL B 1 ? 76 ? P0CG47 1 ? 76 ? 1 76 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # loop_ _pdbx_nmr_exptl.experiment_id _pdbx_nmr_exptl.conditions_id _pdbx_nmr_exptl.solution_id _pdbx_nmr_exptl.type _pdbx_nmr_exptl.spectrometer_id _pdbx_nmr_exptl.sample_state 1 1 1 '2D 1H-15N HSQC' 2 isotropic 2 1 2 '2D 1H-15N HSQC' 2 isotropic 3 1 1 '2D 1H-15N HSQC' 1 isotropic 4 1 2 '2D 1H-15N HSQC' 1 isotropic 5 2 1 '2D 1H-15N HSQC' 2 anisotropic 6 2 2 '2D 1H-15N HSQC' 2 anisotropic # loop_ _pdbx_nmr_exptl_sample_conditions.conditions_id _pdbx_nmr_exptl_sample_conditions.temperature _pdbx_nmr_exptl_sample_conditions.pressure_units _pdbx_nmr_exptl_sample_conditions.pressure _pdbx_nmr_exptl_sample_conditions.pH _pdbx_nmr_exptl_sample_conditions.ionic_strength _pdbx_nmr_exptl_sample_conditions.details _pdbx_nmr_exptl_sample_conditions.ionic_strength_err _pdbx_nmr_exptl_sample_conditions.ionic_strength_units _pdbx_nmr_exptl_sample_conditions.label _pdbx_nmr_exptl_sample_conditions.pH_err _pdbx_nmr_exptl_sample_conditions.pH_units _pdbx_nmr_exptl_sample_conditions.pressure_err _pdbx_nmr_exptl_sample_conditions.temperature_err _pdbx_nmr_exptl_sample_conditions.temperature_units 1 296 atm 1 6.8 20 'pH 6.8 20 mM NaPhosphate, 0.02% NaN3' ? mM standard ? pH ? ? K 2 296 atm 1 6.8 20 ;pH 6.8 20 mM NaPhosphate, 0.02% NaN3 5% C12E5/hexanol mixture ; ? mM 'anisotropic media' ? pH ? ? K # loop_ _pdbx_nmr_sample_details.solution_id _pdbx_nmr_sample_details.contents _pdbx_nmr_sample_details.solvent_system _pdbx_nmr_sample_details.label _pdbx_nmr_sample_details.type _pdbx_nmr_sample_details.details 1 '150 uM [U-99% 15N] K27-diubiquitin, Distal Ub is 15N-labelled Proximal Ub is not enriched, 95% H2O/5% D2O' '95% H2O/5% D2O' 15N_distal_K27-Ub2 solution ;pH 6.8 20 mM NaPhosphate, 0.02% NaN3 K27-linked Ub2 (covalent linkage between K27 side chain and C-terminus of distal Ub) Distal Ub is 15N-labelled Proximal Ub is not enriched ; 2 '150 uM [U-99% 15N] K27-diubiquitin, Distal Ub is not enriched Proximal Ub is 15N-labelled, 95% H2O/5% D2O' '95% H2O/5% D2O' 15N_proximal_K27-Ub2 solution ;pH 6.8 20 mM NaPhosphate, 0.02% NaN3 K27-linked Ub2 (covalent linkage between K27 side chain and C-terminus of distal Ub) Distal Ub is not enriched Proximal Ub is 15N-labelled ; # loop_ _pdbx_nmr_spectrometer.spectrometer_id _pdbx_nmr_spectrometer.model _pdbx_nmr_spectrometer.type _pdbx_nmr_spectrometer.manufacturer _pdbx_nmr_spectrometer.field_strength _pdbx_nmr_spectrometer.details 1 'AVANCE III' ? Bruker 800 ? 2 'AVANCE III' ? Bruker 600 ? # _pdbx_nmr_refine.details ? _pdbx_nmr_refine.entry_id 5UJL _pdbx_nmr_refine.method na _pdbx_nmr_refine.software_ordinal 1 # _pdbx_nmr_ensemble.entry_id 5UJL _pdbx_nmr_ensemble.conformers_calculated_total_number 2 _pdbx_nmr_ensemble.conformers_submitted_total_number 2 _pdbx_nmr_ensemble.conformer_selection_criteria 'structures with the least restraint violations' # _pdbx_nmr_representative.conformer_id 1 _pdbx_nmr_representative.entry_id 5UJL _pdbx_nmr_representative.selection_criteria 'fewest violations' # loop_ _pdbx_nmr_software.ordinal _pdbx_nmr_software.classification _pdbx_nmr_software.name _pdbx_nmr_software.version _pdbx_nmr_software.authors 1 refinement ARMOR 1.1 'Berlin K, Castaneda CA, Fushman D.' 2 'chemical shift assignment' Sparky ? Goddard 3 'peak picking' Sparky ? Goddard # _exptl.absorpt_coefficient_mu ? _exptl.absorpt_correction_T_max ? _exptl.absorpt_correction_T_min ? _exptl.absorpt_correction_type ? _exptl.absorpt_process_details ? _exptl.entry_id 5UJL _exptl.crystals_number ? _exptl.details ? _exptl.method 'SOLUTION NMR' _exptl.method_details ? # _struct.entry_id 5UJL _struct.title 'Representative 1-conformer ensembles of K27-linked Ub2 from RDC data' _struct.pdbx_model_details ? _struct.pdbx_formula_weight ? _struct.pdbx_formula_weight_method ? _struct.pdbx_model_type_details ? _struct.pdbx_CASP_flag N # _struct_keywords.entry_id 5UJL _struct_keywords.text 'diubiquitin, K27-linkage, post-translational modification, SIGNALING PROTEIN' _struct_keywords.pdbx_keywords 'SIGNALING PROTEIN' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 1 ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 AA1 THR A 22 ? GLU A 34 ? THR A 22 GLU A 34 1 ? 13 HELX_P HELX_P2 AA2 THR A 55 ? ASN A 60 ? THR A 55 ASN A 60 1 ? 6 HELX_P HELX_P3 AA3 THR B 22 ? GLY B 35 ? THR B 22 GLY B 35 1 ? 14 HELX_P HELX_P4 AA4 PRO B 37 ? ASP B 39 ? PRO B 37 ASP B 39 5 ? 3 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details AA1 ? 5 ? AA2 ? 5 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense AA1 1 2 ? anti-parallel AA1 2 3 ? parallel AA1 3 4 ? anti-parallel AA1 4 5 ? anti-parallel AA2 1 2 ? anti-parallel AA2 2 3 ? parallel AA2 3 4 ? anti-parallel AA2 4 5 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id AA1 1 LYS A 11 ? GLU A 16 ? LYS A 11 GLU A 16 AA1 2 GLN A 2 ? THR A 7 ? GLN A 2 THR A 7 AA1 3 SER A 65 ? LEU A 71 ? SER A 65 LEU A 71 AA1 4 GLN A 41 ? PHE A 45 ? GLN A 41 PHE A 45 AA1 5 LYS A 48 ? GLN A 49 ? LYS A 48 GLN A 49 AA2 1 THR B 12 ? GLU B 16 ? THR B 12 GLU B 16 AA2 2 GLN B 2 ? THR B 7 ? GLN B 2 THR B 7 AA2 3 THR B 66 ? LEU B 71 ? THR B 66 LEU B 71 AA2 4 GLN B 41 ? PHE B 45 ? GLN B 41 PHE B 45 AA2 5 LYS B 48 ? GLN B 49 ? LYS B 48 GLN B 49 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id AA1 1 2 O ILE A 13 ? O ILE A 13 N VAL A 5 ? N VAL A 5 AA1 2 3 N PHE A 4 ? N PHE A 4 O SER A 65 ? O SER A 65 AA1 3 4 O VAL A 70 ? O VAL A 70 N ARG A 42 ? N ARG A 42 AA1 4 5 N PHE A 45 ? N PHE A 45 O LYS A 48 ? O LYS A 48 AA2 1 2 O ILE B 13 ? O ILE B 13 N VAL B 5 ? N VAL B 5 AA2 2 3 N LYS B 6 ? N LYS B 6 O LEU B 69 ? O LEU B 69 AA2 3 4 O HIS B 68 ? O HIS B 68 N ILE B 44 ? N ILE B 44 AA2 4 5 N PHE B 45 ? N PHE B 45 O LYS B 48 ? O LYS B 48 # _atom_sites.entry_id 5UJL _atom_sites.fract_transf_matrix[1][1] 1.000000 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 1.000000 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 1.000000 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C H N O S # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 MET 1 1 1 MET MET A . n A 1 2 GLN 2 2 2 GLN GLN A . n A 1 3 ILE 3 3 3 ILE ILE A . n A 1 4 PHE 4 4 4 PHE PHE A . n A 1 5 VAL 5 5 5 VAL VAL A . n A 1 6 LYS 6 6 6 LYS LYS A . n A 1 7 THR 7 7 7 THR THR A . n A 1 8 LEU 8 8 8 LEU LEU A . n A 1 9 THR 9 9 9 THR THR A . n A 1 10 GLY 10 10 10 GLY GLY A . n A 1 11 LYS 11 11 11 LYS LYS A . n A 1 12 THR 12 12 12 THR THR A . n A 1 13 ILE 13 13 13 ILE ILE A . n A 1 14 THR 14 14 14 THR THR A . n A 1 15 LEU 15 15 15 LEU LEU A . n A 1 16 GLU 16 16 16 GLU GLU A . n A 1 17 VAL 17 17 17 VAL VAL A . n A 1 18 GLU 18 18 18 GLU GLU A . n A 1 19 PRO 19 19 19 PRO PRO A . n A 1 20 SER 20 20 20 SER SER A . n A 1 21 ASP 21 21 21 ASP ASP A . n A 1 22 THR 22 22 22 THR THR A . n A 1 23 ILE 23 23 23 ILE ILE A . n A 1 24 GLU 24 24 24 GLU GLU A . n A 1 25 ASN 25 25 25 ASN ASN A . n A 1 26 VAL 26 26 26 VAL VAL A . n A 1 27 LYS 27 27 27 LYS LYS A . n A 1 28 ALA 28 28 28 ALA ALA A . n A 1 29 LYS 29 29 29 LYS LYS A . n A 1 30 ILE 30 30 30 ILE ILE A . n A 1 31 GLN 31 31 31 GLN GLN A . n A 1 32 ASP 32 32 32 ASP ASP A . n A 1 33 LYS 33 33 33 LYS LYS A . n A 1 34 GLU 34 34 34 GLU GLU A . n A 1 35 GLY 35 35 35 GLY GLY A . n A 1 36 ILE 36 36 36 ILE ILE A . n A 1 37 PRO 37 37 37 PRO PRO A . n A 1 38 PRO 38 38 38 PRO PRO A . n A 1 39 ASP 39 39 39 ASP ASP A . n A 1 40 GLN 40 40 40 GLN GLN A . n A 1 41 GLN 41 41 41 GLN GLN A . n A 1 42 ARG 42 42 42 ARG ARG A . n A 1 43 LEU 43 43 43 LEU LEU A . n A 1 44 ILE 44 44 44 ILE ILE A . n A 1 45 PHE 45 45 45 PHE PHE A . n A 1 46 ALA 46 46 46 ALA ALA A . n A 1 47 GLY 47 47 47 GLY GLY A . n A 1 48 LYS 48 48 48 LYS LYS A . n A 1 49 GLN 49 49 49 GLN GLN A . n A 1 50 LEU 50 50 50 LEU LEU A . n A 1 51 GLU 51 51 51 GLU GLU A . n A 1 52 ASP 52 52 52 ASP ASP A . n A 1 53 GLY 53 53 53 GLY GLY A . n A 1 54 ARG 54 54 54 ARG ARG A . n A 1 55 THR 55 55 55 THR THR A . n A 1 56 LEU 56 56 56 LEU LEU A . n A 1 57 SER 57 57 57 SER SER A . n A 1 58 ASP 58 58 58 ASP ASP A . n A 1 59 TYR 59 59 59 TYR TYR A . n A 1 60 ASN 60 60 60 ASN ASN A . n A 1 61 ILE 61 61 61 ILE ILE A . n A 1 62 GLN 62 62 62 GLN GLN A . n A 1 63 LYS 63 63 63 LYS LYS A . n A 1 64 GLU 64 64 64 GLU GLU A . n A 1 65 SER 65 65 65 SER SER A . n A 1 66 THR 66 66 66 THR THR A . n A 1 67 LEU 67 67 67 LEU LEU A . n A 1 68 HIS 68 68 68 HIS HIS A . n A 1 69 LEU 69 69 69 LEU LEU A . n A 1 70 VAL 70 70 70 VAL VAL A . n A 1 71 LEU 71 71 71 LEU LEU A . n A 1 72 ARG 72 72 72 ARG ARG A . n A 1 73 LEU 73 73 ? ? ? A . n A 1 74 ARG 74 74 ? ? ? A . n A 1 75 GLY 75 75 ? ? ? A . n A 1 76 GLY 76 76 ? ? ? A . n B 1 1 MET 1 1 1 MET MET B . n B 1 2 GLN 2 2 2 GLN GLN B . n B 1 3 ILE 3 3 3 ILE ILE B . n B 1 4 PHE 4 4 4 PHE PHE B . n B 1 5 VAL 5 5 5 VAL VAL B . n B 1 6 LYS 6 6 6 LYS LYS B . n B 1 7 THR 7 7 7 THR THR B . n B 1 8 LEU 8 8 8 LEU LEU B . n B 1 9 THR 9 9 9 THR THR B . n B 1 10 GLY 10 10 10 GLY GLY B . n B 1 11 LYS 11 11 11 LYS LYS B . n B 1 12 THR 12 12 12 THR THR B . n B 1 13 ILE 13 13 13 ILE ILE B . n B 1 14 THR 14 14 14 THR THR B . n B 1 15 LEU 15 15 15 LEU LEU B . n B 1 16 GLU 16 16 16 GLU GLU B . n B 1 17 VAL 17 17 17 VAL VAL B . n B 1 18 GLU 18 18 18 GLU GLU B . n B 1 19 PRO 19 19 19 PRO PRO B . n B 1 20 SER 20 20 20 SER SER B . n B 1 21 ASP 21 21 21 ASP ASP B . n B 1 22 THR 22 22 22 THR THR B . n B 1 23 ILE 23 23 23 ILE ILE B . n B 1 24 GLU 24 24 24 GLU GLU B . n B 1 25 ASN 25 25 25 ASN ASN B . n B 1 26 VAL 26 26 26 VAL VAL B . n B 1 27 LYS 27 27 27 LYS LYS B . n B 1 28 ALA 28 28 28 ALA ALA B . n B 1 29 LYS 29 29 29 LYS LYS B . n B 1 30 ILE 30 30 30 ILE ILE B . n B 1 31 GLN 31 31 31 GLN GLN B . n B 1 32 ASP 32 32 32 ASP ASP B . n B 1 33 LYS 33 33 33 LYS LYS B . n B 1 34 GLU 34 34 34 GLU GLU B . n B 1 35 GLY 35 35 35 GLY GLY B . n B 1 36 ILE 36 36 36 ILE ILE B . n B 1 37 PRO 37 37 37 PRO PRO B . n B 1 38 PRO 38 38 38 PRO PRO B . n B 1 39 ASP 39 39 39 ASP ASP B . n B 1 40 GLN 40 40 40 GLN GLN B . n B 1 41 GLN 41 41 41 GLN GLN B . n B 1 42 ARG 42 42 42 ARG ARG B . n B 1 43 LEU 43 43 43 LEU LEU B . n B 1 44 ILE 44 44 44 ILE ILE B . n B 1 45 PHE 45 45 45 PHE PHE B . n B 1 46 ALA 46 46 46 ALA ALA B . n B 1 47 GLY 47 47 47 GLY GLY B . n B 1 48 LYS 48 48 48 LYS LYS B . n B 1 49 GLN 49 49 49 GLN GLN B . n B 1 50 LEU 50 50 50 LEU LEU B . n B 1 51 GLU 51 51 51 GLU GLU B . n B 1 52 ASP 52 52 52 ASP ASP B . n B 1 53 GLY 53 53 53 GLY GLY B . n B 1 54 ARG 54 54 54 ARG ARG B . n B 1 55 THR 55 55 55 THR THR B . n B 1 56 LEU 56 56 56 LEU LEU B . n B 1 57 SER 57 57 57 SER SER B . n B 1 58 ASP 58 58 58 ASP ASP B . n B 1 59 TYR 59 59 59 TYR TYR B . n B 1 60 ASN 60 60 60 ASN ASN B . n B 1 61 ILE 61 61 61 ILE ILE B . n B 1 62 GLN 62 62 62 GLN GLN B . n B 1 63 LYS 63 63 63 LYS LYS B . n B 1 64 GLU 64 64 64 GLU GLU B . n B 1 65 SER 65 65 65 SER SER B . n B 1 66 THR 66 66 66 THR THR B . n B 1 67 LEU 67 67 67 LEU LEU B . n B 1 68 HIS 68 68 68 HIS HIS B . n B 1 69 LEU 69 69 69 LEU LEU B . n B 1 70 VAL 70 70 70 VAL VAL B . n B 1 71 LEU 71 71 71 LEU LEU B . n B 1 72 ARG 72 72 72 ARG ARG B . n B 1 73 LEU 73 73 ? ? ? B . n B 1 74 ARG 74 74 ? ? ? B . n B 1 75 GLY 75 75 ? ? ? B . n B 1 76 GLY 76 76 ? ? ? B . n # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 220 ? 1 MORE 2 ? 1 'SSA (A^2)' 8010 ? # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2017-10-25 2 'Structure model' 1 1 2017-12-06 3 'Structure model' 1 2 2020-01-01 4 'Structure model' 1 3 2023-06-14 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Author supporting evidence' 2 3 'Structure model' 'Author supporting evidence' 3 3 'Structure model' 'Data collection' 4 4 'Structure model' 'Database references' 5 4 'Structure model' Other # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 2 'Structure model' pdbx_audit_support 2 3 'Structure model' pdbx_audit_support 3 3 'Structure model' pdbx_nmr_software 4 3 'Structure model' pdbx_nmr_spectrometer 5 4 'Structure model' database_2 6 4 'Structure model' pdbx_database_status # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 2 'Structure model' '_pdbx_audit_support.funding_organization' 2 3 'Structure model' '_pdbx_audit_support.funding_organization' 3 3 'Structure model' '_pdbx_nmr_software.name' 4 3 'Structure model' '_pdbx_nmr_spectrometer.model' 5 4 'Structure model' '_database_2.pdbx_DOI' 6 4 'Structure model' '_database_2.pdbx_database_accession' 7 4 'Structure model' '_pdbx_database_status.status_code_nmr_data' # loop_ _pdbx_nmr_exptl_sample.solution_id _pdbx_nmr_exptl_sample.component _pdbx_nmr_exptl_sample.concentration _pdbx_nmr_exptl_sample.concentration_range _pdbx_nmr_exptl_sample.concentration_units _pdbx_nmr_exptl_sample.isotopic_labeling 1 'K27-diubiquitin, Distal Ub is 15N-labelled Proximal Ub is not enriched' 150 ? uM '[U-99% 15N]' 2 'K27-diubiquitin, Distal Ub is not enriched Proximal Ub is 15N-labelled' 150 ? uM '[U-99% 15N]' # loop_ _pdbx_validate_close_contact.id _pdbx_validate_close_contact.PDB_model_num _pdbx_validate_close_contact.auth_atom_id_1 _pdbx_validate_close_contact.auth_asym_id_1 _pdbx_validate_close_contact.auth_comp_id_1 _pdbx_validate_close_contact.auth_seq_id_1 _pdbx_validate_close_contact.PDB_ins_code_1 _pdbx_validate_close_contact.label_alt_id_1 _pdbx_validate_close_contact.auth_atom_id_2 _pdbx_validate_close_contact.auth_asym_id_2 _pdbx_validate_close_contact.auth_comp_id_2 _pdbx_validate_close_contact.auth_seq_id_2 _pdbx_validate_close_contact.PDB_ins_code_2 _pdbx_validate_close_contact.label_alt_id_2 _pdbx_validate_close_contact.dist 1 1 O A LEU 71 ? ? HB2 A ARG 72 ? ? 1.40 2 1 HZ2 B LYS 11 ? ? OE1 B GLU 34 ? ? 1.49 3 1 H3 B MET 1 ? ? OE1 B GLU 16 ? ? 1.51 4 1 HZ1 B LYS 48 ? ? OE2 B GLU 51 ? ? 1.51 5 1 OE2 B GLU 18 ? ? HZ1 B LYS 29 ? ? 1.55 6 1 HZ2 A LYS 27 ? ? OD1 A ASP 52 ? ? 1.58 7 1 OE2 A GLU 18 ? ? HZ1 A LYS 29 ? ? 1.58 8 1 HG1 A THR 22 ? ? OE1 A GLU 24 ? ? 1.59 9 1 HH22 B ARG 54 ? ? OD1 B ASP 58 ? ? 1.59 10 1 OD1 B ASP 39 ? ? HH11 B ARG 42 ? ? 1.60 11 2 HZ2 B LYS 11 ? ? OE1 B GLU 34 ? ? 1.49 12 2 H3 B MET 1 ? ? OE1 B GLU 16 ? ? 1.51 13 2 HZ1 B LYS 48 ? ? OE2 B GLU 51 ? ? 1.51 14 2 OE2 B GLU 18 ? ? HZ1 B LYS 29 ? ? 1.55 15 2 HZ2 A LYS 27 ? ? OD1 A ASP 52 ? ? 1.58 16 2 OE2 A GLU 18 ? ? HZ1 A LYS 29 ? ? 1.58 17 2 HG1 A THR 22 ? ? OE1 A GLU 24 ? ? 1.59 18 2 HH22 B ARG 54 ? ? OD1 B ASP 58 ? ? 1.59 19 2 OD1 B ASP 39 ? ? HH11 B ARG 42 ? ? 1.60 # loop_ _pdbx_validate_rmsd_angle.id _pdbx_validate_rmsd_angle.PDB_model_num _pdbx_validate_rmsd_angle.auth_atom_id_1 _pdbx_validate_rmsd_angle.auth_asym_id_1 _pdbx_validate_rmsd_angle.auth_comp_id_1 _pdbx_validate_rmsd_angle.auth_seq_id_1 _pdbx_validate_rmsd_angle.PDB_ins_code_1 _pdbx_validate_rmsd_angle.label_alt_id_1 _pdbx_validate_rmsd_angle.auth_atom_id_2 _pdbx_validate_rmsd_angle.auth_asym_id_2 _pdbx_validate_rmsd_angle.auth_comp_id_2 _pdbx_validate_rmsd_angle.auth_seq_id_2 _pdbx_validate_rmsd_angle.PDB_ins_code_2 _pdbx_validate_rmsd_angle.label_alt_id_2 _pdbx_validate_rmsd_angle.auth_atom_id_3 _pdbx_validate_rmsd_angle.auth_asym_id_3 _pdbx_validate_rmsd_angle.auth_comp_id_3 _pdbx_validate_rmsd_angle.auth_seq_id_3 _pdbx_validate_rmsd_angle.PDB_ins_code_3 _pdbx_validate_rmsd_angle.label_alt_id_3 _pdbx_validate_rmsd_angle.angle_value _pdbx_validate_rmsd_angle.angle_target_value _pdbx_validate_rmsd_angle.angle_deviation _pdbx_validate_rmsd_angle.angle_standard_deviation _pdbx_validate_rmsd_angle.linker_flag 1 1 NE A ARG 42 ? ? CZ A ARG 42 ? ? NH1 A ARG 42 ? ? 124.00 120.30 3.70 0.50 N 2 1 CB A TYR 59 ? ? CG A TYR 59 ? ? CD2 A TYR 59 ? ? 117.10 121.00 -3.90 0.60 N 3 1 NE B ARG 72 ? ? CZ B ARG 72 ? ? NH1 B ARG 72 ? ? 123.82 120.30 3.52 0.50 N 4 1 NE B ARG 72 ? ? CZ B ARG 72 ? ? NH2 B ARG 72 ? ? 116.97 120.30 -3.33 0.50 N 5 2 NE A ARG 42 ? ? CZ A ARG 42 ? ? NH1 A ARG 42 ? ? 124.00 120.30 3.70 0.50 N 6 2 CB A TYR 59 ? ? CG A TYR 59 ? ? CD2 A TYR 59 ? ? 117.10 121.00 -3.90 0.60 N 7 2 NE B ARG 72 ? ? CZ B ARG 72 ? ? NH1 B ARG 72 ? ? 123.85 120.30 3.55 0.50 N 8 2 NE B ARG 72 ? ? CZ B ARG 72 ? ? NH2 B ARG 72 ? ? 116.93 120.30 -3.37 0.50 N # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 LEU A 8 ? ? 34.89 -83.22 2 1 LYS A 11 ? ? -68.60 97.33 3 1 ASP A 32 ? ? -61.91 -106.93 4 1 LYS A 33 ? ? -29.68 -42.08 5 1 ALA A 46 ? ? 36.41 81.63 6 1 GLU A 51 ? ? -99.59 -126.82 7 1 ASP A 52 ? ? -130.20 -76.58 8 1 GLN A 62 ? ? -129.99 -167.19 9 1 PRO B 38 ? ? -60.59 -73.27 10 1 ALA B 46 ? ? 59.95 -88.45 11 1 ASP B 52 ? ? -72.34 -87.93 12 2 LEU A 8 ? ? 34.89 -83.22 13 2 LYS A 11 ? ? -68.60 97.33 14 2 ASP A 32 ? ? -61.91 -106.93 15 2 LYS A 33 ? ? -29.68 -42.08 16 2 ALA A 46 ? ? 36.41 81.63 17 2 GLU A 51 ? ? -99.59 -126.82 18 2 ASP A 52 ? ? -130.20 -76.58 19 2 GLN A 62 ? ? -129.99 -167.19 20 2 PRO B 38 ? ? -60.54 -73.34 21 2 ALA B 46 ? ? 59.93 -88.40 22 2 ASP B 52 ? ? -72.38 -87.90 # loop_ _pdbx_validate_planes.id _pdbx_validate_planes.PDB_model_num _pdbx_validate_planes.auth_comp_id _pdbx_validate_planes.auth_asym_id _pdbx_validate_planes.auth_seq_id _pdbx_validate_planes.PDB_ins_code _pdbx_validate_planes.label_alt_id _pdbx_validate_planes.rmsd _pdbx_validate_planes.type 1 1 ARG A 54 ? ? 0.190 'SIDE CHAIN' 2 1 TYR A 59 ? ? 0.074 'SIDE CHAIN' 3 1 ARG B 42 ? ? 0.092 'SIDE CHAIN' 4 2 ARG A 54 ? ? 0.190 'SIDE CHAIN' 5 2 TYR A 59 ? ? 0.074 'SIDE CHAIN' 6 2 ARG B 42 ? ? 0.092 'SIDE CHAIN' # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A LEU 73 ? A LEU 73 2 1 Y 1 A ARG 74 ? A ARG 74 3 1 Y 1 A GLY 75 ? A GLY 75 4 1 Y 1 A GLY 76 ? A GLY 76 5 1 Y 1 B LEU 73 ? B LEU 73 6 1 Y 1 B ARG 74 ? B ARG 74 7 1 Y 1 B GLY 75 ? B GLY 75 8 1 Y 1 B GLY 76 ? B GLY 76 9 2 Y 1 A LEU 73 ? A LEU 73 10 2 Y 1 A ARG 74 ? A ARG 74 11 2 Y 1 A GLY 75 ? A GLY 75 12 2 Y 1 A GLY 76 ? A GLY 76 13 2 Y 1 B LEU 73 ? B LEU 73 14 2 Y 1 B ARG 74 ? B ARG 74 15 2 Y 1 B GLY 75 ? B GLY 75 16 2 Y 1 B GLY 76 ? B GLY 76 # _pdbx_audit_support.funding_organization 'National Institutes of Health/National Institute of General Medical Sciences (NIH/NIGMS)' _pdbx_audit_support.country 'United States' _pdbx_audit_support.grant_number GM065334 _pdbx_audit_support.ordinal 1 #