HEADER SIGNALING PROTEIN 20-JAN-17 5UK6 TITLE STRUCTURE OF ANABAENA SENSORY RHODOPSIN DETERMINED BY SOLID STATE NMR TITLE 2 SPECTROSCOPY AND DEER COMPND MOL_ID: 1; COMPND 2 MOLECULE: BACTERIORHODOPSIN; COMPND 3 CHAIN: A, B, C; COMPND 4 FRAGMENT: UNP RESIDUES 1-229; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: NOSTOC SP. (STRAIN PCC 7120 / SAG 25.82 / UTEX SOURCE 3 2576); SOURCE 4 ORGANISM_TAXID: 103690; SOURCE 5 STRAIN: PCC 7120 / SAG 25.82 / UTEX 2576; SOURCE 6 GENE: ALR3165; SOURCE 7 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 8 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS ANABEANA SENSORY RHODOPSIN, TRIMER, SEVEN-TRANSMEMBRANE PROTEINS, KEYWDS 2 SIGNALING PROTEIN EXPDTA SOLID-STATE NMR NUMMDL 10 AUTHOR S.MILIKISIYANTS,S.WANG,R.A.MUNRO,M.DONOHUE,M.E.WARD,L.S.BROWN, AUTHOR 2 T.I.SMIRNOVA,V.LADIZHANSKY,A.I.SMIRNOV REVDAT 5 08-JAN-20 5UK6 1 REMARK REVDAT 4 27-NOV-19 5UK6 1 REMARK REVDAT 3 27-SEP-17 5UK6 1 REMARK REVDAT 2 21-JUN-17 5UK6 1 JRNL REVDAT 1 31-MAY-17 5UK6 0 JRNL AUTH S.MILIKISIYANTS,S.WANG,R.A.MUNRO,M.DONOHUE,M.E.WARD, JRNL AUTH 2 D.BOLTON,L.S.BROWN,T.I.SMIRNOVA,V.LADIZHANSKY,A.I.SMIRNOV JRNL TITL OLIGOMERIC STRUCTURE OF ANABAENA SENSORY RHODOPSIN IN A JRNL TITL 2 LIPID BILAYER ENVIRONMENT BY COMBINING SOLID-STATE NMR AND JRNL TITL 3 LONG-RANGE DEER CONSTRAINTS. JRNL REF J. MOL. BIOL. V. 429 1903 2017 JRNL REFN ESSN 1089-8638 JRNL PMID 28501588 JRNL DOI 10.1016/J.JMB.2017.05.005 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : TOPSPIN 3.0 REMARK 3 AUTHORS : BRUKER BIOSPIN REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5UK6 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 24-JAN-17. REMARK 100 THE DEPOSITION ID IS D_1000225976. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 278 REMARK 210 PH : 7.0 REMARK 210 IONIC STRENGTH : NA REMARK 210 PRESSURE : 1 ATM REMARK 210 SAMPLE CONTENTS : 2.0 W/W [U-100% 13C; U-100% 15N] REMARK 210 UCNASR, DMPC/DMPA REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 2D NCA; 2D PDSD; CONCA; NCACX; REMARK 210 NCOCX REMARK 210 SPECTROMETER FIELD STRENGTH : 800 MHZ REMARK 210 SPECTROMETER MODEL : AVANCE II REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : CNS, CARA REMARK 210 METHOD USED : NULL REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : NULL REMARK 210 CONFORMERS, NUMBER SUBMITTED : 10 REMARK 210 CONFORMERS, SELECTION CRITERIA : NULL REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : NULL REMARK 210 REMARK 210 REMARK: NULL REMARK 217 REMARK 217 SOLID STATE NMR STUDY REMARK 217 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLID REMARK 217 STATE NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 217 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 217 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 465 SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 MODELS 1-10 REMARK 465 RES C SSSEQI REMARK 465 HIS A 230 REMARK 465 HIS A 231 REMARK 465 HIS A 232 REMARK 465 HIS A 233 REMARK 465 HIS A 234 REMARK 465 HIS A 235 REMARK 465 HIS B 230 REMARK 465 HIS B 231 REMARK 465 HIS B 232 REMARK 465 HIS B 233 REMARK 465 HIS B 234 REMARK 465 HIS B 235 REMARK 465 HIS C 230 REMARK 465 HIS C 231 REMARK 465 HIS C 232 REMARK 465 HIS C 233 REMARK 465 HIS C 234 REMARK 465 HIS C 235 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 HA2 GLY A 145 HD21 ASN A 148 1.25 REMARK 500 HA2 GLY A 145 ND2 ASN A 148 1.47 REMARK 500 O GLY A 145 HD22 ASN A 148 1.56 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 ARG A 30 56.40 -92.11 REMARK 500 1 LYS A 96 -30.74 -138.53 REMARK 500 1 PHE A 190 93.11 58.25 REMARK 500 1 ARG A 222 75.17 52.90 REMARK 500 1 LEU B 3 42.07 -157.14 REMARK 500 1 ASN B 28 132.29 -173.33 REMARK 500 1 LEU B 121 34.83 -86.26 REMARK 500 1 PRO B 149 -39.90 -36.91 REMARK 500 1 GLN B 157 -70.87 -78.74 REMARK 500 1 SER B 188 15.79 56.77 REMARK 500 1 PHE B 190 86.23 58.25 REMARK 500 1 ARG B 222 81.51 52.66 REMARK 500 1 LEU C 6 -15.13 -155.54 REMARK 500 1 ASN C 28 132.46 -171.08 REMARK 500 1 ARG C 30 47.07 -85.50 REMARK 500 1 LEU C 150 49.51 -85.07 REMARK 500 1 SER C 188 19.81 57.26 REMARK 500 1 PHE C 190 90.68 57.90 REMARK 500 1 PHE C 202 1.44 -69.17 REMARK 500 1 ARG C 222 76.37 51.66 REMARK 500 2 ASN A 28 132.45 -174.18 REMARK 500 2 THR A 100 -60.56 -120.60 REMARK 500 2 LEU A 121 31.87 -91.87 REMARK 500 2 LEU A 150 46.13 -86.72 REMARK 500 2 GLN A 157 -73.94 -72.79 REMARK 500 2 SER A 188 15.76 58.72 REMARK 500 2 PHE A 190 -26.16 -163.07 REMARK 500 2 ARG A 222 -84.13 61.42 REMARK 500 2 ASN B 28 132.35 -171.84 REMARK 500 2 ASP B 57 65.23 60.54 REMARK 500 2 ASP B 98 -43.05 -147.53 REMARK 500 2 GLU B 123 -72.07 -84.41 REMARK 500 2 GLN B 157 -70.16 -83.01 REMARK 500 2 SER B 158 113.24 -162.06 REMARK 500 2 SER B 188 18.12 57.38 REMARK 500 2 PHE B 190 95.95 58.29 REMARK 500 2 ARG B 222 -82.15 61.06 REMARK 500 2 GLU C 4 -66.48 -97.61 REMARK 500 2 SER C 5 98.23 60.32 REMARK 500 2 ASN C 28 132.18 -173.79 REMARK 500 2 ASP C 98 -42.84 -140.74 REMARK 500 2 TRP C 99 76.98 51.02 REMARK 500 2 THR C 100 -57.79 -120.26 REMARK 500 2 GLU C 123 -65.08 -93.26 REMARK 500 2 LEU C 150 51.21 -90.16 REMARK 500 2 GLN C 157 -70.70 -75.01 REMARK 500 2 SER C 158 115.46 -161.33 REMARK 500 2 SER C 188 25.88 48.99 REMARK 500 2 PHE C 190 91.44 56.19 REMARK 500 2 ARG C 222 -86.60 58.86 REMARK 500 REMARK 500 THIS ENTRY HAS 370 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 18595 RELATED DB: BMRB DBREF 5UK6 A 1 229 UNP Q8YSC4 Q8YSC4_NOSS1 1 229 DBREF 5UK6 B 1 229 UNP Q8YSC4 Q8YSC4_NOSS1 1 229 DBREF 5UK6 C 1 229 UNP Q8YSC4 Q8YSC4_NOSS1 1 229 SEQADV 5UK6 HIS A 230 UNP Q8YSC4 EXPRESSION TAG SEQADV 5UK6 HIS A 231 UNP Q8YSC4 EXPRESSION TAG SEQADV 5UK6 HIS A 232 UNP Q8YSC4 EXPRESSION TAG SEQADV 5UK6 HIS A 233 UNP Q8YSC4 EXPRESSION TAG SEQADV 5UK6 HIS A 234 UNP Q8YSC4 EXPRESSION TAG SEQADV 5UK6 HIS A 235 UNP Q8YSC4 EXPRESSION TAG SEQADV 5UK6 HIS B 230 UNP Q8YSC4 EXPRESSION TAG SEQADV 5UK6 HIS B 231 UNP Q8YSC4 EXPRESSION TAG SEQADV 5UK6 HIS B 232 UNP Q8YSC4 EXPRESSION TAG SEQADV 5UK6 HIS B 233 UNP Q8YSC4 EXPRESSION TAG SEQADV 5UK6 HIS B 234 UNP Q8YSC4 EXPRESSION TAG SEQADV 5UK6 HIS B 235 UNP Q8YSC4 EXPRESSION TAG SEQADV 5UK6 HIS C 230 UNP Q8YSC4 EXPRESSION TAG SEQADV 5UK6 HIS C 231 UNP Q8YSC4 EXPRESSION TAG SEQADV 5UK6 HIS C 232 UNP Q8YSC4 EXPRESSION TAG SEQADV 5UK6 HIS C 233 UNP Q8YSC4 EXPRESSION TAG SEQADV 5UK6 HIS C 234 UNP Q8YSC4 EXPRESSION TAG SEQADV 5UK6 HIS C 235 UNP Q8YSC4 EXPRESSION TAG SEQRES 1 A 235 MET ASN LEU GLU SER LEU LEU HIS TRP ILE TYR VAL ALA SEQRES 2 A 235 GLY MET THR ILE GLY ALA LEU HIS PHE TRP SER LEU SER SEQRES 3 A 235 ARG ASN PRO ARG GLY VAL PRO GLN TYR GLU TYR LEU VAL SEQRES 4 A 235 ALA MET PHE ILE PRO ILE TRP SER GLY LEU ALA TYR MET SEQRES 5 A 235 ALA MET ALA ILE ASP GLN GLY LYS VAL GLU ALA ALA GLY SEQRES 6 A 235 GLN ILE ALA HIS TYR ALA ARG TYR ILE ASP TRP MET VAL SEQRES 7 A 235 THR THR PRO LEU LEU LEU LEU SER LEU SER TRP THR ALA SEQRES 8 A 235 MET GLN PHE ILE LYS LYS ASP TRP THR LEU ILE GLY PHE SEQRES 9 A 235 LEU MET SER THR GLN ILE VAL VAL ILE THR SER GLY LEU SEQRES 10 A 235 ILE ALA ASP LEU SER GLU ARG ASP TRP VAL ARG TYR LEU SEQRES 11 A 235 TRP TYR ILE CYS GLY VAL CYS ALA PHE LEU ILE ILE LEU SEQRES 12 A 235 TRP GLY ILE TRP ASN PRO LEU ARG ALA LYS THR ARG THR SEQRES 13 A 235 GLN SER SER GLU LEU ALA ASN LEU TYR ASP LYS LEU VAL SEQRES 14 A 235 THR TYR PHE THR VAL LEU TRP ILE GLY TYR PRO ILE VAL SEQRES 15 A 235 TRP ILE ILE GLY PRO SER GLY PHE GLY TRP ILE ASN GLN SEQRES 16 A 235 THR ILE ASP THR PHE LEU PHE CYS LEU LEU PRO PHE PHE SEQRES 17 A 235 SER LYR VAL GLY PHE SER PHE LEU ASP LEU HIS GLY LEU SEQRES 18 A 235 ARG ASN LEU ASN ASP SER ARG GLN HIS HIS HIS HIS HIS SEQRES 19 A 235 HIS SEQRES 1 B 235 MET ASN LEU GLU SER LEU LEU HIS TRP ILE TYR VAL ALA SEQRES 2 B 235 GLY MET THR ILE GLY ALA LEU HIS PHE TRP SER LEU SER SEQRES 3 B 235 ARG ASN PRO ARG GLY VAL PRO GLN TYR GLU TYR LEU VAL SEQRES 4 B 235 ALA MET PHE ILE PRO ILE TRP SER GLY LEU ALA TYR MET SEQRES 5 B 235 ALA MET ALA ILE ASP GLN GLY LYS VAL GLU ALA ALA GLY SEQRES 6 B 235 GLN ILE ALA HIS TYR ALA ARG TYR ILE ASP TRP MET VAL SEQRES 7 B 235 THR THR PRO LEU LEU LEU LEU SER LEU SER TRP THR ALA SEQRES 8 B 235 MET GLN PHE ILE LYS LYS ASP TRP THR LEU ILE GLY PHE SEQRES 9 B 235 LEU MET SER THR GLN ILE VAL VAL ILE THR SER GLY LEU SEQRES 10 B 235 ILE ALA ASP LEU SER GLU ARG ASP TRP VAL ARG TYR LEU SEQRES 11 B 235 TRP TYR ILE CYS GLY VAL CYS ALA PHE LEU ILE ILE LEU SEQRES 12 B 235 TRP GLY ILE TRP ASN PRO LEU ARG ALA LYS THR ARG THR SEQRES 13 B 235 GLN SER SER GLU LEU ALA ASN LEU TYR ASP LYS LEU VAL SEQRES 14 B 235 THR TYR PHE THR VAL LEU TRP ILE GLY TYR PRO ILE VAL SEQRES 15 B 235 TRP ILE ILE GLY PRO SER GLY PHE GLY TRP ILE ASN GLN SEQRES 16 B 235 THR ILE ASP THR PHE LEU PHE CYS LEU LEU PRO PHE PHE SEQRES 17 B 235 SER LYR VAL GLY PHE SER PHE LEU ASP LEU HIS GLY LEU SEQRES 18 B 235 ARG ASN LEU ASN ASP SER ARG GLN HIS HIS HIS HIS HIS SEQRES 19 B 235 HIS SEQRES 1 C 235 MET ASN LEU GLU SER LEU LEU HIS TRP ILE TYR VAL ALA SEQRES 2 C 235 GLY MET THR ILE GLY ALA LEU HIS PHE TRP SER LEU SER SEQRES 3 C 235 ARG ASN PRO ARG GLY VAL PRO GLN TYR GLU TYR LEU VAL SEQRES 4 C 235 ALA MET PHE ILE PRO ILE TRP SER GLY LEU ALA TYR MET SEQRES 5 C 235 ALA MET ALA ILE ASP GLN GLY LYS VAL GLU ALA ALA GLY SEQRES 6 C 235 GLN ILE ALA HIS TYR ALA ARG TYR ILE ASP TRP MET VAL SEQRES 7 C 235 THR THR PRO LEU LEU LEU LEU SER LEU SER TRP THR ALA SEQRES 8 C 235 MET GLN PHE ILE LYS LYS ASP TRP THR LEU ILE GLY PHE SEQRES 9 C 235 LEU MET SER THR GLN ILE VAL VAL ILE THR SER GLY LEU SEQRES 10 C 235 ILE ALA ASP LEU SER GLU ARG ASP TRP VAL ARG TYR LEU SEQRES 11 C 235 TRP TYR ILE CYS GLY VAL CYS ALA PHE LEU ILE ILE LEU SEQRES 12 C 235 TRP GLY ILE TRP ASN PRO LEU ARG ALA LYS THR ARG THR SEQRES 13 C 235 GLN SER SER GLU LEU ALA ASN LEU TYR ASP LYS LEU VAL SEQRES 14 C 235 THR TYR PHE THR VAL LEU TRP ILE GLY TYR PRO ILE VAL SEQRES 15 C 235 TRP ILE ILE GLY PRO SER GLY PHE GLY TRP ILE ASN GLN SEQRES 16 C 235 THR ILE ASP THR PHE LEU PHE CYS LEU LEU PRO PHE PHE SEQRES 17 C 235 SER LYR VAL GLY PHE SER PHE LEU ASP LEU HIS GLY LEU SEQRES 18 C 235 ARG ASN LEU ASN ASP SER ARG GLN HIS HIS HIS HIS HIS SEQRES 19 C 235 HIS HET LYR A 210 68 HET LYR B 210 68 HET LYR C 210 68 HETNAM LYR N~6~-[(2Z,4E,6E,8E)-3,7-DIMETHYL-9-(2,6,6- HETNAM 2 LYR TRIMETHYLCYCLOHEX-1-EN-1-YL)NONA-2,4,6,8- HETNAM 3 LYR TETRAENYL]LYSINE FORMUL 1 LYR 3(C26 H42 N2 O2) HELIX 1 AA1 LEU A 6 SER A 26 1 21 HELIX 2 AA2 PRO A 33 ILE A 56 1 24 HELIX 3 AA3 HIS A 69 MET A 92 1 24 HELIX 4 AA4 THR A 100 ASP A 120 1 21 HELIX 5 AA5 TRP A 126 TRP A 147 1 22 HELIX 6 AA6 LYS A 153 GLN A 157 5 5 HELIX 7 AA7 SER A 158 TRP A 183 1 26 HELIX 8 AA8 ASN A 194 ARG A 222 1 29 HELIX 9 AA9 LEU B 6 SER B 26 1 21 HELIX 10 AB1 PRO B 33 ASP B 57 1 25 HELIX 11 AB2 HIS B 69 MET B 92 1 24 HELIX 12 AB3 THR B 100 LEU B 121 1 22 HELIX 13 AB4 TRP B 126 TRP B 147 1 22 HELIX 14 AB5 LYS B 153 GLN B 157 5 5 HELIX 15 AB6 SER B 158 TRP B 183 1 26 HELIX 16 AB7 ASN B 194 ARG B 222 1 29 HELIX 17 AB8 LEU C 6 SER C 26 1 21 HELIX 18 AB9 PRO C 33 ASP C 57 1 25 HELIX 19 AC1 HIS C 69 MET C 92 1 24 HELIX 20 AC2 THR C 100 ASP C 120 1 21 HELIX 21 AC3 TRP C 126 TRP C 147 1 22 HELIX 22 AC4 LYS C 153 GLN C 157 5 5 HELIX 23 AC5 SER C 158 TRP C 183 1 26 HELIX 24 AC6 ASN C 194 ARG C 222 1 29 SHEET 1 AA1 2 GLU A 62 ALA A 63 0 SHEET 2 AA1 2 GLN A 66 ILE A 67 -1 O GLN A 66 N ALA A 63 SHEET 1 AA2 2 GLU B 62 ALA B 63 0 SHEET 2 AA2 2 GLN B 66 ILE B 67 -1 O GLN B 66 N ALA B 63 SHEET 1 AA3 2 GLU C 62 ALA C 63 0 SHEET 2 AA3 2 GLN C 66 ILE C 67 -1 O GLN C 66 N ALA C 63 LINK C SER A 209 N LYR A 210 1555 1555 1.33 LINK C LYR A 210 N VAL A 211 1555 1555 1.33 LINK C SER B 209 N LYR B 210 1555 1555 1.33 LINK C LYR B 210 N VAL B 211 1555 1555 1.33 LINK C SER C 209 N LYR C 210 1555 1555 1.33 LINK C LYR C 210 N VAL C 211 1555 1555 1.33 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1