HEADER IMMUNE SYSTEM 23-JAN-17 5UKP TITLE STRUCTURE OF UNLIGANDED ANTI-GP120 CD4BS ANTIBODY DH522.1 FAB COMPND MOL_ID: 1; COMPND 2 MOLECULE: DH522.1 FAB FRAGMENT HEAVY CHAIN; COMPND 3 CHAIN: H; COMPND 4 ENGINEERED: YES; COMPND 5 MOL_ID: 2; COMPND 6 MOLECULE: DH522.1 FAB FRAGMENT LIGHT CHAIN; COMPND 7 CHAIN: L; COMPND 8 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MACACA MULATTA; SOURCE 3 ORGANISM_TAXID: 9544; SOURCE 4 EXPRESSION_SYSTEM: HOMO SAPIENS; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 9606; SOURCE 6 EXPRESSION_SYSTEM_CELL_LINE: HEK 293F; SOURCE 7 MOL_ID: 2; SOURCE 8 ORGANISM_SCIENTIFIC: MACACA MULATTA; SOURCE 9 ORGANISM_TAXID: 9544; SOURCE 10 EXPRESSION_SYSTEM: HOMO SAPIENS; SOURCE 11 EXPRESSION_SYSTEM_TAXID: 9606; SOURCE 12 EXPRESSION_SYSTEM_CELL_LINE: HEK 293F KEYWDS HIV GP120 IMMUNE SYSTEM, IMMUNE SYSTEM EXPDTA X-RAY DIFFRACTION AUTHOR N.I.NICELY REVDAT 3 04-OCT-23 5UKP 1 REMARK REVDAT 2 11-DEC-19 5UKP 1 REMARK REVDAT 1 06-DEC-17 5UKP 0 JRNL AUTH W.B.WILLIAMS,J.ZHANG,C.JIANG,N.I.NICELY,D.FERA,K.LUO, JRNL AUTH 2 M.A.MOODY,H.X.LIAO,S.M.ALAM,T.B.KEPLER,A.RAMESH,K.WIEHE, JRNL AUTH 3 J.A.HOLLAND,T.BRADLEY,N.VANDERGRIFT,K.O.SAUNDERS,R.PARKS, JRNL AUTH 4 A.FOULGER,S.M.XIA,M.BONSIGNORI,D.C.MONTEFIORI,M.LOUDER, JRNL AUTH 5 A.EATON,S.SANTRA,R.SCEARCE,L.SUTHERLAND,A.NEWMAN, JRNL AUTH 6 H.BOUTON-VERVILLE,C.BOWMAN,H.BOMZE,F.GAO,D.J.MARSHALL, JRNL AUTH 7 J.F.WHITESIDES,X.NIE,G.KELSOE,S.G.REED,C.B.FOX,K.CLARY, JRNL AUTH 8 M.KOUTSOUKOS,D.FRANCO,J.R.MASCOLA,S.C.HARRISON,B.F.HAYNES, JRNL AUTH 9 L.VERKOCZY JRNL TITL INITIATION OF HIV NEUTRALIZING B CELL LINEAGES WITH JRNL TITL 2 SEQUENTIAL ENVELOPE IMMUNIZATIONS. JRNL REF NAT COMMUN V. 8 1732 2017 JRNL REFN ESSN 2041-1723 JRNL PMID 29170366 JRNL DOI 10.1038/S41467-017-01336-3 REMARK 2 REMARK 2 RESOLUTION. 2.00 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.9_1692 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.00 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 41.56 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 96.4 REMARK 3 NUMBER OF REFLECTIONS : 32746 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.194 REMARK 3 R VALUE (WORKING SET) : 0.192 REMARK 3 FREE R VALUE : 0.236 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.890 REMARK 3 FREE R VALUE TEST SET COUNT : 1929 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 41.5709 - 4.8232 1.00 2466 158 0.1598 0.1775 REMARK 3 2 4.8232 - 3.8291 1.00 2321 143 0.1430 0.1634 REMARK 3 3 3.8291 - 3.3454 0.99 2297 143 0.1939 0.2470 REMARK 3 4 3.3454 - 3.0396 0.99 2281 144 0.2108 0.2781 REMARK 3 5 3.0396 - 2.8218 0.99 2250 144 0.2222 0.2851 REMARK 3 6 2.8218 - 2.6554 0.98 2228 137 0.2231 0.2594 REMARK 3 7 2.6554 - 2.5225 0.98 2189 131 0.2331 0.2918 REMARK 3 8 2.5225 - 2.4127 0.97 2213 140 0.2171 0.2597 REMARK 3 9 2.4127 - 2.3198 0.95 2149 136 0.1981 0.2875 REMARK 3 10 2.3198 - 2.2398 0.94 2130 134 0.1957 0.2411 REMARK 3 11 2.2398 - 2.1697 0.94 2119 135 0.1956 0.2396 REMARK 3 12 2.1697 - 2.1077 0.94 2089 130 0.1948 0.2905 REMARK 3 13 2.1077 - 2.0522 0.93 2068 130 0.2044 0.2312 REMARK 3 14 2.0522 - 2.0000 0.90 2017 124 0.2130 0.2821 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.220 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 22.970 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.007 3299 REMARK 3 ANGLE : 1.182 4496 REMARK 3 CHIRALITY : 0.045 512 REMARK 3 PLANARITY : 0.006 569 REMARK 3 DIHEDRAL : 12.950 1149 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 8 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: (CHAIN H AND RESID 2:26) REMARK 3 ORIGIN FOR THE GROUP (A): 19.6566 8.8495 71.7007 REMARK 3 T TENSOR REMARK 3 T11: 0.2502 T22: 0.2239 REMARK 3 T33: 0.2523 T12: 0.0367 REMARK 3 T13: -0.0625 T23: -0.0118 REMARK 3 L TENSOR REMARK 3 L11: 1.0861 L22: 3.7210 REMARK 3 L33: 0.7361 L12: 0.2828 REMARK 3 L13: 0.5004 L23: -0.3320 REMARK 3 S TENSOR REMARK 3 S11: 0.1109 S12: 0.2561 S13: -0.1950 REMARK 3 S21: -0.3288 S22: -0.0039 S23: 0.5058 REMARK 3 S31: 0.0083 S32: -0.1865 S33: -0.1627 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: (CHAIN H AND RESID 27:77) REMARK 3 ORIGIN FOR THE GROUP (A): 22.0030 -0.6827 78.3890 REMARK 3 T TENSOR REMARK 3 T11: 0.2351 T22: 0.2018 REMARK 3 T33: 0.2418 T12: -0.0434 REMARK 3 T13: -0.0328 T23: 0.0243 REMARK 3 L TENSOR REMARK 3 L11: 1.9177 L22: 2.0539 REMARK 3 L33: 1.5000 L12: -0.4044 REMARK 3 L13: 0.4892 L23: -0.4095 REMARK 3 S TENSOR REMARK 3 S11: -0.0200 S12: 0.0803 S13: -0.1601 REMARK 3 S21: -0.1722 S22: 0.0289 S23: 0.2399 REMARK 3 S31: 0.1724 S32: -0.1545 S33: 0.0276 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: (CHAIN H AND RESID 78:117) REMARK 3 ORIGIN FOR THE GROUP (A): 26.1750 4.4966 76.3153 REMARK 3 T TENSOR REMARK 3 T11: 0.2263 T22: 0.1690 REMARK 3 T33: 0.1936 T12: -0.0274 REMARK 3 T13: -0.0169 T23: -0.0024 REMARK 3 L TENSOR REMARK 3 L11: 1.3087 L22: 2.2050 REMARK 3 L33: 1.4334 L12: -0.6729 REMARK 3 L13: 0.4776 L23: -0.7939 REMARK 3 S TENSOR REMARK 3 S11: 0.1320 S12: 0.0966 S13: -0.2217 REMARK 3 S21: 0.1409 S22: -0.1300 S23: 0.2061 REMARK 3 S31: 0.2309 S32: -0.0242 S33: -0.0009 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: (CHAIN H AND RESID 118:215) REMARK 3 ORIGIN FOR THE GROUP (A): 32.0825 26.4314 55.1829 REMARK 3 T TENSOR REMARK 3 T11: 0.1225 T22: 0.1386 REMARK 3 T33: 0.1525 T12: -0.0021 REMARK 3 T13: -0.0123 T23: 0.0027 REMARK 3 L TENSOR REMARK 3 L11: 2.5560 L22: 0.9042 REMARK 3 L33: 1.7737 L12: 0.0317 REMARK 3 L13: -0.6027 L23: -0.2326 REMARK 3 S TENSOR REMARK 3 S11: 0.0548 S12: 0.2407 S13: -0.0622 REMARK 3 S21: -0.0729 S22: 0.0491 S23: 0.0277 REMARK 3 S31: -0.0496 S32: -0.0236 S33: -0.1192 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: (CHAIN L AND RESID 3:13) REMARK 3 ORIGIN FOR THE GROUP (A): 46.9869 6.8871 85.1843 REMARK 3 T TENSOR REMARK 3 T11: 0.1752 T22: 0.2516 REMARK 3 T33: 0.2567 T12: -0.0052 REMARK 3 T13: -0.0520 T23: 0.1122 REMARK 3 L TENSOR REMARK 3 L11: 0.5658 L22: 4.2270 REMARK 3 L33: 3.3192 L12: 0.2500 REMARK 3 L13: 0.3867 L23: 0.3660 REMARK 3 S TENSOR REMARK 3 S11: 0.2289 S12: 0.3872 S13: 0.8467 REMARK 3 S21: -0.0867 S22: -0.3893 S23: -0.1275 REMARK 3 S31: -0.3336 S32: 0.5175 S33: 0.1309 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: (CHAIN L AND RESID 14:89) REMARK 3 ORIGIN FOR THE GROUP (A): 44.9763 -1.3365 77.7694 REMARK 3 T TENSOR REMARK 3 T11: 0.2195 T22: 0.2170 REMARK 3 T33: 0.1942 T12: 0.0662 REMARK 3 T13: 0.0254 T23: 0.0651 REMARK 3 L TENSOR REMARK 3 L11: 1.4665 L22: 1.3380 REMARK 3 L33: 1.6678 L12: -0.2368 REMARK 3 L13: 0.2416 L23: -0.4398 REMARK 3 S TENSOR REMARK 3 S11: 0.0458 S12: 0.2523 S13: 0.1319 REMARK 3 S21: -0.2014 S22: -0.2427 S23: -0.3356 REMARK 3 S31: 0.1835 S32: 0.2337 S33: 0.1662 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: (CHAIN L AND RESID 90:106A) REMARK 3 ORIGIN FOR THE GROUP (A): 38.2821 1.8416 83.2907 REMARK 3 T TENSOR REMARK 3 T11: 0.1947 T22: 0.1617 REMARK 3 T33: 0.1969 T12: 0.0205 REMARK 3 T13: -0.0575 T23: 0.0613 REMARK 3 L TENSOR REMARK 3 L11: 3.5272 L22: 0.9634 REMARK 3 L33: 2.1830 L12: 0.0740 REMARK 3 L13: -0.6847 L23: -0.2375 REMARK 3 S TENSOR REMARK 3 S11: -0.1298 S12: 0.2698 S13: 0.3644 REMARK 3 S21: -0.0851 S22: 0.2178 S23: 0.0744 REMARK 3 S31: 0.1756 S32: -0.0394 S33: -0.1115 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: (CHAIN L AND RESID 107:208) REMARK 3 ORIGIN FOR THE GROUP (A): 43.6752 34.7597 63.3564 REMARK 3 T TENSOR REMARK 3 T11: 0.1257 T22: 0.1495 REMARK 3 T33: 0.1628 T12: -0.0149 REMARK 3 T13: -0.0182 T23: 0.0070 REMARK 3 L TENSOR REMARK 3 L11: 2.0570 L22: 0.9113 REMARK 3 L33: 1.0496 L12: -0.2842 REMARK 3 L13: 0.3423 L23: -0.3977 REMARK 3 S TENSOR REMARK 3 S11: -0.0575 S12: 0.0079 S13: 0.2268 REMARK 3 S21: -0.0249 S22: -0.0034 S23: -0.0059 REMARK 3 S31: -0.0975 S32: 0.0908 S33: 0.0431 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5UKP COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 25-JAN-17. REMARK 100 THE DEPOSITION ID IS D_1000226039. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 15-AUG-15 REMARK 200 TEMPERATURE (KELVIN) : 93 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 22-BM REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 300 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 33888 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.000 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 200 DATA REDUNDANCY : 5.600 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.07700 REMARK 200 FOR THE DATA SET : 18.4000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: THE STARTING MODEL WAS A HYBRID OF THE HEAVY CHAIN REMARK 200 FROM CH103UCA FAB (PDB 4QHK) WITH THE LIGHT CHAIN FROM A32 (PDB REMARK 200 3TNM). REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 53.40 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.64 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M HEPES PH 7.5, 30% 1,2 REMARK 280 -PROPANEDIOL, 20% PEG 400, VAPOR DIFFUSION, SITTING DROP, REMARK 280 TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 31 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+1/3 REMARK 290 3555 -X+Y,-X,Z+2/3 REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z+2/3 REMARK 290 6555 -X,-X+Y,-Z+1/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 56.61167 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 113.22333 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 113.22333 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 56.61167 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3270 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 19320 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -24.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: H, L REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLN H 1 REMARK 465 SER H 127 REMARK 465 SER H 128 REMARK 465 ARG H 129 REMARK 465 SER H 130 REMARK 465 THR H 131 REMARK 465 SER H 132 REMARK 465 CYS H 216 REMARK 465 GLY H 217 REMARK 465 GLY H 218 REMARK 465 GLN L 1 REMARK 465 SER L 2 REMARK 465 ALA L 209 REMARK 465 GLU L 210 REMARK 465 CYS L 211 REMARK 465 SER L 212 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG H 210 NE - CZ - NH1 ANGL. DEV. = 3.2 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER H 15 -14.30 83.50 REMARK 500 LYS H 75 -25.11 69.48 REMARK 500 SER H 82B 62.56 30.42 REMARK 500 VAL H 100 -58.18 73.77 REMARK 500 ASP H 144 69.58 61.64 REMARK 500 THR H 191 -60.20 -98.92 REMARK 500 ASP L 27B -84.07 -134.42 REMARK 500 VAL L 51 -46.66 71.33 REMARK 500 ALA L 84 -179.13 -170.88 REMARK 500 SER L 95 -22.24 -167.70 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 5UKO RELATED DB: PDB REMARK 900 RELATED ID: 5UKN RELATED DB: PDB REMARK 900 RELATED ID: 5UKQ RELATED DB: PDB REMARK 900 RELATED ID: 5UKR RELATED DB: PDB DBREF 5UKP H 1 218 PDB 5UKP 5UKP 1 218 DBREF 5UKP L 1 212 PDB 5UKP 5UKP 1 212 SEQRES 1 H 230 GLN VAL GLN LEU GLN GLU SER GLY PRO GLY LEU VAL LYS SEQRES 2 H 230 PRO SER GLU THR LEU SER LEU THR CYS ALA VAL SER GLY SEQRES 3 H 230 GLY SER ILE GLY ASP ASP TYR TYR TRP ASN TRP ILE ARG SEQRES 4 H 230 GLN PRO PRO GLY LYS GLY LEU GLU TRP ILE GLY SER ILE SEQRES 5 H 230 TYR GLY SER PHE GLY GLY THR ASN TYR ASN PRO SER LEU SEQRES 6 H 230 LYS SER ARG VAL THR ILE SER MET ASP THR SER LYS ASN SEQRES 7 H 230 GLN PHE SER LEU ASN LEU SER SER VAL THR ALA ALA ASP SEQRES 8 H 230 THR ALA VAL TYR TYR CYS ALA ARG GLY SER TYR ASN ILE SEQRES 9 H 230 VAL VAL LEU PHE GLY TYR TYR PHE ASP TYR TRP GLY GLN SEQRES 10 H 230 GLY VAL LEU VAL THR VAL SER SER ALA SER THR LYS GLY SEQRES 11 H 230 PRO SER VAL PHE PRO LEU ALA PRO SER SER ARG SER THR SEQRES 12 H 230 SER GLU SER THR ALA ALA LEU GLY CYS LEU VAL LYS ASP SEQRES 13 H 230 TYR PHE PRO GLU PRO VAL THR VAL SER TRP ASN SER GLY SEQRES 14 H 230 SER LEU THR SER GLY VAL HIS THR PHE PRO ALA VAL LEU SEQRES 15 H 230 GLN SER SER GLY LEU TYR SER LEU SER SER VAL VAL THR SEQRES 16 H 230 VAL PRO SER SER SER LEU GLY THR GLN THR TYR VAL CYS SEQRES 17 H 230 ASN VAL ASN HIS LYS PRO SER ASN THR LYS VAL ASP LYS SEQRES 18 H 230 ARG VAL GLU ILE LYS THR CYS GLY GLY SEQRES 1 L 216 GLN SER ALA LEU THR GLN PRO PRO SER VAL SER LYS SER SEQRES 2 L 216 LEU GLY GLN SER VAL THR ILE SER CYS SER GLY THR SER SEQRES 3 L 216 SER ASP ILE GLY ALA TYR ASN GLY VAL SER TRP TYR GLN SEQRES 4 L 216 HIS HIS SER GLY THR ALA PRO ARG LEU LEU ILE TYR GLU SEQRES 5 L 216 VAL SER LYS ARG PRO SER GLY VAL SER ASP ARG PHE SER SEQRES 6 L 216 GLY SER LYS SER GLY ASN THR ALA SER LEU THR ILE SER SEQRES 7 L 216 GLY LEU GLN ALA GLU ASP GLU ALA ASP TYR TYR CYS GLY SEQRES 8 L 216 SER TYR ARG SER GLY SER THR TRP VAL PHE GLY GLY GLY SEQRES 9 L 216 THR ARG LEU THR VAL LEU GLY GLN PRO LYS ALA SER PRO SEQRES 10 L 216 THR VAL THR LEU PHE PRO PRO SER SER GLU GLU LEU GLN SEQRES 11 L 216 ALA ASN LYS ALA THR LEU VAL CYS LEU ILE SER ASP PHE SEQRES 12 L 216 TYR PRO GLY VAL VAL LYS VAL ALA TRP LYS ALA ASP GLY SEQRES 13 L 216 SER ALA VAL ASN ALA GLY VAL GLU THR THR THR PRO SER SEQRES 14 L 216 LYS GLN SER ASN ASN LYS TYR ALA ALA SER SER TYR LEU SEQRES 15 L 216 SER LEU THR SER ASP GLN TRP LYS SER HIS LYS SER TYR SEQRES 16 L 216 SER CYS GLN VAL THR HIS GLU GLY SER THR VAL GLU LYS SEQRES 17 L 216 THR VAL ALA PRO ALA GLU CYS SER FORMUL 3 HOH *161(H2 O) HELIX 1 AA1 LEU H 63 SER H 65 5 3 HELIX 2 AA2 THR H 83 THR H 87 5 5 HELIX 3 AA3 SER H 156 SER H 158 5 3 HELIX 4 AA4 SER H 187 LEU H 189 5 3 HELIX 5 AA5 LYS H 201 ASN H 204 5 4 HELIX 6 AA6 GLN L 79 GLU L 83 5 5 HELIX 7 AA7 SER L 121 ALA L 127 1 7 HELIX 8 AA8 SER L 182 SER L 187 1 6 SHEET 1 AA1 4 GLN H 3 SER H 7 0 SHEET 2 AA1 4 LEU H 18 SER H 25 -1 O SER H 25 N GLN H 3 SHEET 3 AA1 4 GLN H 77 LEU H 82 -1 O LEU H 82 N LEU H 18 SHEET 4 AA1 4 VAL H 67 ASP H 72 -1 N ASP H 72 O GLN H 77 SHEET 1 AA2 6 LEU H 11 VAL H 12 0 SHEET 2 AA2 6 VAL H 107 VAL H 111 1 O THR H 110 N VAL H 12 SHEET 3 AA2 6 ALA H 88 VAL H 100 -1 N TYR H 90 O VAL H 107 SHEET 4 AA2 6 TYR H 34 GLN H 39 -1 N ILE H 37 O TYR H 91 SHEET 5 AA2 6 GLU H 46 TYR H 52 -1 O ILE H 48 N TRP H 36 SHEET 6 AA2 6 THR H 57 TYR H 59 -1 O ASN H 58 N SER H 50 SHEET 1 AA3 4 LEU H 11 VAL H 12 0 SHEET 2 AA3 4 VAL H 107 VAL H 111 1 O THR H 110 N VAL H 12 SHEET 3 AA3 4 ALA H 88 VAL H 100 -1 N TYR H 90 O VAL H 107 SHEET 4 AA3 4 GLY H 100D TRP H 103 -1 O GLY H 100D N VAL H 100 SHEET 1 AA4 4 SER H 120 LEU H 124 0 SHEET 2 AA4 4 THR H 135 TYR H 145 -1 O GLY H 139 N LEU H 124 SHEET 3 AA4 4 TYR H 176 PRO H 185 -1 O LEU H 178 N VAL H 142 SHEET 4 AA4 4 VAL H 163 THR H 165 -1 N HIS H 164 O VAL H 181 SHEET 1 AA5 4 SER H 120 LEU H 124 0 SHEET 2 AA5 4 THR H 135 TYR H 145 -1 O GLY H 139 N LEU H 124 SHEET 3 AA5 4 TYR H 176 PRO H 185 -1 O LEU H 178 N VAL H 142 SHEET 4 AA5 4 VAL H 169 LEU H 170 -1 N VAL H 169 O SER H 177 SHEET 1 AA6 3 THR H 151 TRP H 154 0 SHEET 2 AA6 3 TYR H 194 HIS H 200 -1 O ASN H 197 N SER H 153 SHEET 3 AA6 3 THR H 205 VAL H 211 -1 O VAL H 207 N VAL H 198 SHEET 1 AA7 5 SER L 10 SER L 14 0 SHEET 2 AA7 5 THR L 102 LEU L 106A 1 O LEU L 106A N LYS L 13 SHEET 3 AA7 5 ALA L 84 ARG L 92 -1 N ALA L 84 O LEU L 104 SHEET 4 AA7 5 VAL L 33 HIS L 38 -1 N TYR L 36 O TYR L 87 SHEET 5 AA7 5 ARG L 45 ILE L 48 -1 O ARG L 45 N GLN L 37 SHEET 1 AA8 4 SER L 10 SER L 14 0 SHEET 2 AA8 4 THR L 102 LEU L 106A 1 O LEU L 106A N LYS L 13 SHEET 3 AA8 4 ALA L 84 ARG L 92 -1 N ALA L 84 O LEU L 104 SHEET 4 AA8 4 THR L 95A PHE L 98 -1 O VAL L 97 N SER L 90 SHEET 1 AA9 3 VAL L 19 SER L 24 0 SHEET 2 AA9 3 THR L 70 ILE L 75 -1 O ALA L 71 N CYS L 23 SHEET 3 AA9 3 PHE L 62 SER L 67 -1 N SER L 65 O SER L 72 SHEET 1 AB1 4 THR L 114 PHE L 118 0 SHEET 2 AB1 4 LYS L 129 PHE L 139 -1 O LEU L 135 N THR L 116 SHEET 3 AB1 4 TYR L 172 THR L 181 -1 O LEU L 180 N ALA L 130 SHEET 4 AB1 4 VAL L 159 THR L 161 -1 N GLU L 160 O TYR L 177 SHEET 1 AB2 4 THR L 114 PHE L 118 0 SHEET 2 AB2 4 LYS L 129 PHE L 139 -1 O LEU L 135 N THR L 116 SHEET 3 AB2 4 TYR L 172 THR L 181 -1 O LEU L 180 N ALA L 130 SHEET 4 AB2 4 SER L 165 LYS L 166 -1 N SER L 165 O ALA L 173 SHEET 1 AB3 4 SER L 153 VAL L 155 0 SHEET 2 AB3 4 LYS L 145 ALA L 150 -1 N ALA L 150 O SER L 153 SHEET 3 AB3 4 TYR L 191 HIS L 197 -1 O GLN L 194 N ALA L 147 SHEET 4 AB3 4 SER L 200 VAL L 206 -1 O SER L 200 N HIS L 197 SSBOND 1 CYS H 22 CYS H 92 1555 1555 2.04 SSBOND 2 CYS H 140 CYS H 196 1555 1555 2.03 SSBOND 3 CYS L 23 CYS L 88 1555 1555 2.04 SSBOND 4 CYS L 134 CYS L 193 1555 1555 2.05 CISPEP 1 PHE H 146 PRO H 147 0 -3.76 CISPEP 2 GLU H 148 PRO H 149 0 -2.82 CISPEP 3 SER L 93 GLY L 94 0 -7.31 CISPEP 4 TYR L 140 PRO L 141 0 0.63 CRYST1 70.682 70.682 169.835 90.00 90.00 120.00 P 31 2 1 6 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.014148 0.008168 0.000000 0.00000 SCALE2 0.000000 0.016337 0.000000 0.00000 SCALE3 0.000000 0.000000 0.005888 0.00000