HEADER IMMUNE SYSTEM 23-JAN-17 5UKQ TITLE STRUCTURE OF UNLIGANDED ANTI-GP120 CD4BS ANTIBODY DH522.2 FAB COMPND MOL_ID: 1; COMPND 2 MOLECULE: DH522.2 FAB FRAGMENT HEAVY CHAIN; COMPND 3 CHAIN: H; COMPND 4 ENGINEERED: YES; COMPND 5 MOL_ID: 2; COMPND 6 MOLECULE: DH522.2 FAB FRAGMENT LIGHT CHAIN; COMPND 7 CHAIN: L; COMPND 8 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MACACA MULATTA; SOURCE 3 ORGANISM_TAXID: 9544; SOURCE 4 EXPRESSION_SYSTEM: HOMO SAPIENS; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 9606; SOURCE 6 EXPRESSION_SYSTEM_CELL_LINE: HEK 293F; SOURCE 7 MOL_ID: 2; SOURCE 8 ORGANISM_SCIENTIFIC: MACACA MULATTA; SOURCE 9 ORGANISM_TAXID: 9544; SOURCE 10 EXPRESSION_SYSTEM: HOMO SAPIENS; SOURCE 11 EXPRESSION_SYSTEM_TAXID: 9606; SOURCE 12 EXPRESSION_SYSTEM_CELL_LINE: HEK 293F KEYWDS HIV GP120 IMMUNE SYSTEM, IMMUNE SYSTEM EXPDTA X-RAY DIFFRACTION AUTHOR N.I.NICELY REVDAT 3 04-OCT-23 5UKQ 1 REMARK REVDAT 2 11-DEC-19 5UKQ 1 REMARK REVDAT 1 06-DEC-17 5UKQ 0 JRNL AUTH W.B.WILLIAMS,J.ZHANG,C.JIANG,N.I.NICELY,D.FERA,K.LUO, JRNL AUTH 2 M.A.MOODY,H.X.LIAO,S.M.ALAM,T.B.KEPLER,A.RAMESH,K.WIEHE, JRNL AUTH 3 J.A.HOLLAND,T.BRADLEY,N.VANDERGRIFT,K.O.SAUNDERS,R.PARKS, JRNL AUTH 4 A.FOULGER,S.M.XIA,M.BONSIGNORI,D.C.MONTEFIORI,M.LOUDER, JRNL AUTH 5 A.EATON,S.SANTRA,R.SCEARCE,L.SUTHERLAND,A.NEWMAN, JRNL AUTH 6 H.BOUTON-VERVILLE,C.BOWMAN,H.BOMZE,F.GAO,D.J.MARSHALL, JRNL AUTH 7 J.F.WHITESIDES,X.NIE,G.KELSOE,S.G.REED,C.B.FOX,K.CLARY, JRNL AUTH 8 M.KOUTSOUKOS,D.FRANCO,J.R.MASCOLA,S.C.HARRISON,B.F.HAYNES, JRNL AUTH 9 L.VERKOCZY JRNL TITL INITIATION OF HIV NEUTRALIZING B CELL LINEAGES WITH JRNL TITL 2 SEQUENTIAL ENVELOPE IMMUNIZATIONS. JRNL REF NAT COMMUN V. 8 1732 2017 JRNL REFN ESSN 2041-1723 JRNL PMID 29170366 JRNL DOI 10.1038/S41467-017-01336-3 REMARK 2 REMARK 2 RESOLUTION. 2.10 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.9_1692 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.10 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 24.31 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 89.3 REMARK 3 NUMBER OF REFLECTIONS : 27150 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.177 REMARK 3 R VALUE (WORKING SET) : 0.174 REMARK 3 FREE R VALUE : 0.230 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 6.610 REMARK 3 FREE R VALUE TEST SET COUNT : 1794 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 24.3111 - 4.9251 0.99 2293 162 0.1628 0.1946 REMARK 3 2 4.9251 - 3.9145 0.98 2186 154 0.1246 0.1667 REMARK 3 3 3.9145 - 3.4212 0.91 1996 143 0.1560 0.2052 REMARK 3 4 3.4212 - 3.1091 0.96 2104 146 0.1733 0.2443 REMARK 3 5 3.1091 - 2.8867 0.94 2074 146 0.1885 0.2583 REMARK 3 6 2.8867 - 2.7167 0.93 2012 145 0.1911 0.2743 REMARK 3 7 2.7167 - 2.5808 0.90 1969 137 0.2084 0.2731 REMARK 3 8 2.5808 - 2.4686 0.91 1969 136 0.2131 0.2910 REMARK 3 9 2.4686 - 2.3736 0.89 1913 140 0.2135 0.2673 REMARK 3 10 2.3736 - 2.2918 0.86 1855 123 0.2041 0.3012 REMARK 3 11 2.2918 - 2.2202 0.72 1555 110 0.2533 0.3307 REMARK 3 12 2.2202 - 2.1567 0.77 1658 127 0.2570 0.3198 REMARK 3 13 2.1567 - 2.1000 0.83 1772 125 0.2153 0.2770 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.260 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 25.640 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.008 3325 REMARK 3 ANGLE : 1.174 4530 REMARK 3 CHIRALITY : 0.043 518 REMARK 3 PLANARITY : 0.005 575 REMARK 3 DIHEDRAL : 12.971 1158 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 8 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: (CHAIN H AND RESID 2:102) REMARK 3 ORIGIN FOR THE GROUP (A): -4.0673 -0.1031 -27.9985 REMARK 3 T TENSOR REMARK 3 T11: 0.2790 T22: 0.2786 REMARK 3 T33: 0.2433 T12: -0.0102 REMARK 3 T13: -0.0322 T23: 0.0080 REMARK 3 L TENSOR REMARK 3 L11: 1.2434 L22: 1.0324 REMARK 3 L33: 3.6939 L12: -0.0830 REMARK 3 L13: -0.4614 L23: 0.4479 REMARK 3 S TENSOR REMARK 3 S11: 0.0360 S12: 0.2474 S13: -0.1073 REMARK 3 S21: -0.2105 S22: -0.0502 S23: 0.0824 REMARK 3 S31: -0.1113 S32: -0.2699 S33: 0.0186 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: (CHAIN H AND RESID 103:113) REMARK 3 ORIGIN FOR THE GROUP (A): -1.2768 4.4741 -16.7939 REMARK 3 T TENSOR REMARK 3 T11: 0.3351 T22: 0.2982 REMARK 3 T33: 0.2788 T12: -0.0680 REMARK 3 T13: -0.0361 T23: -0.0082 REMARK 3 L TENSOR REMARK 3 L11: 3.4679 L22: 1.3966 REMARK 3 L33: 3.0131 L12: 0.7624 REMARK 3 L13: -3.2205 L23: -0.7867 REMARK 3 S TENSOR REMARK 3 S11: 0.3369 S12: 0.0042 S13: 0.2223 REMARK 3 S21: -0.0094 S22: -0.0043 S23: 0.1044 REMARK 3 S31: -0.4789 S32: 0.3806 S33: -0.1909 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: (CHAIN H AND RESID 114:133) REMARK 3 ORIGIN FOR THE GROUP (A): 2.7670 18.6502 1.1499 REMARK 3 T TENSOR REMARK 3 T11: 0.2461 T22: 0.3028 REMARK 3 T33: 0.3005 T12: -0.0274 REMARK 3 T13: -0.0004 T23: 0.0284 REMARK 3 L TENSOR REMARK 3 L11: 0.7540 L22: 2.1979 REMARK 3 L33: 3.2687 L12: -1.2629 REMARK 3 L13: -0.2824 L23: 0.0464 REMARK 3 S TENSOR REMARK 3 S11: -0.0632 S12: -0.1555 S13: 0.6300 REMARK 3 S21: -0.0881 S22: -0.1056 S23: 0.1812 REMARK 3 S31: -0.1679 S32: 0.5134 S33: 0.0417 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: (CHAIN H AND RESID 134:215) REMARK 3 ORIGIN FOR THE GROUP (A): 5.5208 21.7858 -4.8158 REMARK 3 T TENSOR REMARK 3 T11: 0.2584 T22: 0.2551 REMARK 3 T33: 0.3606 T12: -0.0035 REMARK 3 T13: -0.0144 T23: 0.0111 REMARK 3 L TENSOR REMARK 3 L11: 4.0934 L22: 3.7811 REMARK 3 L33: 1.6350 L12: 2.2920 REMARK 3 L13: 0.0793 L23: -0.2922 REMARK 3 S TENSOR REMARK 3 S11: -0.0920 S12: 0.1038 S13: 0.5558 REMARK 3 S21: -0.0731 S22: -0.0114 S23: 0.1737 REMARK 3 S31: -0.1065 S32: 0.0905 S33: 0.1147 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: (CHAIN L AND RESID 1:17) REMARK 3 ORIGIN FOR THE GROUP (A): 20.9236 -5.4104 -24.1548 REMARK 3 T TENSOR REMARK 3 T11: 0.2096 T22: 0.4213 REMARK 3 T33: 0.2409 T12: 0.0468 REMARK 3 T13: -0.0047 T23: -0.0587 REMARK 3 L TENSOR REMARK 3 L11: 0.5657 L22: 4.3732 REMARK 3 L33: 4.8152 L12: 0.2193 REMARK 3 L13: 1.1977 L23: 0.9620 REMARK 3 S TENSOR REMARK 3 S11: -0.0281 S12: 0.2550 S13: -0.2504 REMARK 3 S21: -0.1945 S22: 0.0894 S23: -0.2880 REMARK 3 S31: 0.1968 S32: 0.4501 S33: -0.1804 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: (CHAIN L AND RESID 18:72) REMARK 3 ORIGIN FOR THE GROUP (A): 15.2284 -1.9305 -33.7979 REMARK 3 T TENSOR REMARK 3 T11: 0.3210 T22: 0.3952 REMARK 3 T33: 0.2676 T12: -0.0194 REMARK 3 T13: 0.0170 T23: -0.0122 REMARK 3 L TENSOR REMARK 3 L11: 1.6754 L22: 2.4993 REMARK 3 L33: 2.4990 L12: 0.8997 REMARK 3 L13: 0.5328 L23: 0.4015 REMARK 3 S TENSOR REMARK 3 S11: -0.0801 S12: 0.2782 S13: -0.0239 REMARK 3 S21: -0.3044 S22: 0.1386 S23: -0.1019 REMARK 3 S31: -0.1174 S32: 0.3348 S33: -0.0460 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: (CHAIN L AND RESID 73:108) REMARK 3 ORIGIN FOR THE GROUP (A): 16.4831 -0.9508 -26.9236 REMARK 3 T TENSOR REMARK 3 T11: 0.2499 T22: 0.3096 REMARK 3 T33: 0.2285 T12: -0.0034 REMARK 3 T13: 0.0190 T23: -0.0311 REMARK 3 L TENSOR REMARK 3 L11: 3.4196 L22: 1.5253 REMARK 3 L33: 2.5134 L12: 0.7913 REMARK 3 L13: 0.6941 L23: 0.2547 REMARK 3 S TENSOR REMARK 3 S11: 0.0214 S12: -0.0544 S13: 0.0460 REMARK 3 S21: -0.1290 S22: -0.0355 S23: -0.0460 REMARK 3 S31: -0.1006 S32: 0.2436 S33: 0.0318 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: (CHAIN L AND RESID 109:209) REMARK 3 ORIGIN FOR THE GROUP (A): 17.3666 13.7557 3.8226 REMARK 3 T TENSOR REMARK 3 T11: 0.2145 T22: 0.2476 REMARK 3 T33: 0.2534 T12: -0.0012 REMARK 3 T13: -0.0044 T23: -0.0185 REMARK 3 L TENSOR REMARK 3 L11: 2.3039 L22: 1.6928 REMARK 3 L33: 2.7635 L12: -0.1014 REMARK 3 L13: -0.0036 L23: 0.1340 REMARK 3 S TENSOR REMARK 3 S11: 0.0304 S12: 0.0477 S13: 0.0787 REMARK 3 S21: -0.0707 S22: -0.0815 S23: -0.0839 REMARK 3 S31: -0.0197 S32: -0.0342 S33: 0.0675 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5UKQ COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 25-JAN-17. REMARK 100 THE DEPOSITION ID IS D_1000226041. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 11-JAN-16 REMARK 200 TEMPERATURE (KELVIN) : 93 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : RIGAKU MICROMAX-007 HF REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.54 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : RIGAKU RAXIS IV++ REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 30338 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.100 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 96.3 REMARK 200 DATA REDUNDANCY : 4.000 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.12200 REMARK 200 FOR THE DATA SET : 12.1000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 5UKP REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 53.50 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.64 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.075 M TRIS-HCL PH 8.5, 1.5 M REMARK 280 AMMONIUM SULFATE, 25% GLYCEROL, VAPOR DIFFUSION, SITTING DROP, REMARK 280 TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 2 2 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -X,Y,-Z+1/2 REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 92.37250 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 92.37250 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 35.03700 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 39.60850 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 35.03700 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 39.60850 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 92.37250 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 35.03700 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 39.60850 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 92.37250 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 35.03700 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 39.60850 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3590 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 19010 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -24.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: H, L REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH H 374 LIES ON A SPECIAL POSITION. REMARK 375 HOH H 404 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLN H 1 REMARK 465 SER H 127 REMARK 465 SER H 128 REMARK 465 ARG H 129 REMARK 465 SER H 130 REMARK 465 THR H 131 REMARK 465 SER H 132 REMARK 465 CYS H 216 REMARK 465 GLY H 217 REMARK 465 GLY H 218 REMARK 465 GLU L 210 REMARK 465 CYS L 211 REMARK 465 SER L 212 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH L 525 O HOH L 536 2.16 REMARK 500 O HOH L 515 O HOH L 528 2.18 REMARK 500 OD1 ASP H 32 OG SER H 53 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER H 15 -10.02 79.10 REMARK 500 PHE H 54 -4.86 -143.17 REMARK 500 ARG H 66 17.79 -141.78 REMARK 500 SER H 98 -103.57 -108.04 REMARK 500 ASP H 144 63.75 61.45 REMARK 500 ASP L 27B -84.77 -131.26 REMARK 500 VAL L 51 -46.69 69.97 REMARK 500 ASN L 52 13.96 -145.05 REMARK 500 ASN L 170 -7.34 74.78 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL L 301 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 5UKO RELATED DB: PDB REMARK 900 RELATED ID: 5UKP RELATED DB: PDB REMARK 900 RELATED ID: 5UKN RELATED DB: PDB REMARK 900 RELATED ID: 5UKR RELATED DB: PDB DBREF 5UKQ H 1 218 PDB 5UKQ 5UKQ 1 218 DBREF 5UKQ L 1 212 PDB 5UKQ 5UKQ 1 212 SEQRES 1 H 230 GLN VAL GLN LEU GLN GLU SER GLY PRO GLY LEU VAL LYS SEQRES 2 H 230 PRO SER GLU THR LEU SER LEU THR CYS ALA VAL SER GLY SEQRES 3 H 230 GLY SER ILE GLY ASP ASP TYR TYR TRP ASN TRP ILE ARG SEQRES 4 H 230 GLN SER PRO GLY LYS GLY LEU GLU TRP ILE GLY SER ILE SEQRES 5 H 230 TYR GLY SER PHE GLY GLY THR ASN PHE ASN PRO SER LEU SEQRES 6 H 230 LYS ASN ARG VAL THR ILE SER MET ASP THR SER ASN ASN SEQRES 7 H 230 GLN VAL SER LEU LYS LEU ASN SER VAL THR ALA ALA ASP SEQRES 8 H 230 THR ALA VAL TYR TYR CYS ALA ARG GLY SER HIS SER ILE SEQRES 9 H 230 VAL VAL LEU PHE GLY TYR TYR PHE ASP TYR TRP GLY GLN SEQRES 10 H 230 GLY VAL LEU VAL THR VAL SER SER ALA SER THR LYS GLY SEQRES 11 H 230 PRO SER VAL PHE PRO LEU ALA PRO SER SER ARG SER THR SEQRES 12 H 230 SER GLU SER THR ALA ALA LEU GLY CYS LEU VAL LYS ASP SEQRES 13 H 230 TYR PHE PRO GLU PRO VAL THR VAL SER TRP ASN SER GLY SEQRES 14 H 230 SER LEU THR SER GLY VAL HIS THR PHE PRO ALA VAL LEU SEQRES 15 H 230 GLN SER SER GLY LEU TYR SER LEU SER SER VAL VAL THR SEQRES 16 H 230 VAL PRO SER SER SER LEU GLY THR GLN THR TYR VAL CYS SEQRES 17 H 230 ASN VAL ASN HIS LYS PRO SER ASN THR LYS VAL ASP LYS SEQRES 18 H 230 ARG VAL GLU ILE LYS THR CYS GLY GLY SEQRES 1 L 216 GLN SER ALA LEU THR GLN PRO PRO SER VAL SER LYS SER SEQRES 2 L 216 LEU GLY GLN SER VAL THR ILE SER CYS SER GLY THR THR SEQRES 3 L 216 ASN ASP ILE GLY ALA TYR ASN GLY VAL SER TRP TYR GLN SEQRES 4 L 216 HIS HIS SER ASP THR ALA PRO ARG LEU LEU ILE TYR GLU SEQRES 5 L 216 VAL ASN LYS ARG PRO SER GLY VAL SER ASP ARG PHE SER SEQRES 6 L 216 GLY SER LYS SER GLY ASN THR ALA SER LEU THR ILE SER SEQRES 7 L 216 GLY LEU GLN ALA GLU ASP GLU ALA ASP TYR TYR CYS GLY SEQRES 8 L 216 SER TYR ARG SER GLY SER THR TRP VAL PHE GLY GLY GLY SEQRES 9 L 216 THR ARG LEU THR VAL LEU GLY GLN PRO LYS ALA SER PRO SEQRES 10 L 216 THR VAL THR LEU PHE PRO PRO SER SER GLU GLU LEU GLN SEQRES 11 L 216 ALA ASN LYS ALA THR LEU VAL CYS LEU ILE SER ASP PHE SEQRES 12 L 216 TYR PRO GLY VAL VAL LYS VAL ALA TRP LYS ALA ASP GLY SEQRES 13 L 216 SER ALA VAL ASN ALA GLY VAL GLU THR THR THR PRO SER SEQRES 14 L 216 LYS GLN SER ASN ASN LYS TYR ALA ALA SER SER TYR LEU SEQRES 15 L 216 SER LEU THR SER ASP GLN TRP LYS SER HIS LYS SER TYR SEQRES 16 L 216 SER CYS GLN VAL THR HIS GLU GLY SER THR VAL GLU LYS SEQRES 17 L 216 THR VAL ALA PRO ALA GLU CYS SER HET GOL L 301 6 HETNAM GOL GLYCEROL HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 3 GOL C3 H8 O3 FORMUL 4 HOH *263(H2 O) HELIX 1 AA1 LEU H 63 ASN H 65 5 3 HELIX 2 AA2 THR H 73 ASN H 75 5 3 HELIX 3 AA3 THR H 83 THR H 87 5 5 HELIX 4 AA4 ILE H 99 GLY H 100D 1 6 HELIX 5 AA5 SER H 156 SER H 158 5 3 HELIX 6 AA6 SER H 187 GLY H 190 5 4 HELIX 7 AA7 LYS H 201 ASN H 204 5 4 HELIX 8 AA8 GLN L 79 GLU L 83 5 5 HELIX 9 AA9 SER L 121 ALA L 127 1 7 HELIX 10 AB1 SER L 182 SER L 187 1 6 SHEET 1 AA1 4 GLN H 3 SER H 7 0 SHEET 2 AA1 4 LEU H 18 SER H 25 -1 O ALA H 23 N GLN H 5 SHEET 3 AA1 4 GLN H 77 LEU H 82 -1 O LEU H 82 N LEU H 18 SHEET 4 AA1 4 VAL H 67 ASP H 72 -1 N ASP H 72 O GLN H 77 SHEET 1 AA2 6 LEU H 11 VAL H 12 0 SHEET 2 AA2 6 VAL H 107 VAL H 111 1 O THR H 110 N VAL H 12 SHEET 3 AA2 6 ALA H 88 HIS H 97 -1 N TYR H 90 O VAL H 107 SHEET 4 AA2 6 TYR H 34 SER H 40 -1 N ILE H 37 O TYR H 91 SHEET 5 AA2 6 GLY H 44 TYR H 52 -1 O ILE H 48 N TRP H 36 SHEET 6 AA2 6 THR H 57 PHE H 59 -1 O ASN H 58 N SER H 50 SHEET 1 AA3 4 LEU H 11 VAL H 12 0 SHEET 2 AA3 4 VAL H 107 VAL H 111 1 O THR H 110 N VAL H 12 SHEET 3 AA3 4 ALA H 88 HIS H 97 -1 N TYR H 90 O VAL H 107 SHEET 4 AA3 4 TYR H 100E TRP H 103 -1 O TYR H 102 N ARG H 94 SHEET 1 AA4 4 SER H 120 LEU H 124 0 SHEET 2 AA4 4 THR H 135 TYR H 145 -1 O LYS H 143 N SER H 120 SHEET 3 AA4 4 TYR H 176 PRO H 185 -1 O VAL H 184 N ALA H 136 SHEET 4 AA4 4 VAL H 163 THR H 165 -1 N HIS H 164 O VAL H 181 SHEET 1 AA5 4 SER H 120 LEU H 124 0 SHEET 2 AA5 4 THR H 135 TYR H 145 -1 O LYS H 143 N SER H 120 SHEET 3 AA5 4 TYR H 176 PRO H 185 -1 O VAL H 184 N ALA H 136 SHEET 4 AA5 4 VAL H 169 LEU H 170 -1 N VAL H 169 O SER H 177 SHEET 1 AA6 3 THR H 151 TRP H 154 0 SHEET 2 AA6 3 VAL H 195 HIS H 200 -1 O ASN H 197 N SER H 153 SHEET 3 AA6 3 THR H 205 ARG H 210 -1 O VAL H 207 N VAL H 198 SHEET 1 AA7 5 SER L 10 SER L 14 0 SHEET 2 AA7 5 THR L 102 LEU L 106A 1 O LEU L 106A N LYS L 13 SHEET 3 AA7 5 ALA L 84 ARG L 92 -1 N ALA L 84 O LEU L 104 SHEET 4 AA7 5 VAL L 33 HIS L 38 -1 N HIS L 38 O ASP L 85 SHEET 5 AA7 5 ARG L 45 ILE L 48 -1 O ARG L 45 N GLN L 37 SHEET 1 AA8 4 SER L 10 SER L 14 0 SHEET 2 AA8 4 THR L 102 LEU L 106A 1 O LEU L 106A N LYS L 13 SHEET 3 AA8 4 ALA L 84 ARG L 92 -1 N ALA L 84 O LEU L 104 SHEET 4 AA8 4 THR L 95A PHE L 98 -1 O VAL L 97 N SER L 90 SHEET 1 AA9 3 VAL L 19 SER L 24 0 SHEET 2 AA9 3 THR L 70 ILE L 75 -1 O LEU L 73 N ILE L 21 SHEET 3 AA9 3 PHE L 62 SER L 67 -1 N SER L 67 O THR L 70 SHEET 1 AB1 4 THR L 114 PHE L 118 0 SHEET 2 AB1 4 LYS L 129 PHE L 139 -1 O LEU L 135 N THR L 116 SHEET 3 AB1 4 TYR L 172 THR L 181 -1 O SER L 176 N CYS L 134 SHEET 4 AB1 4 VAL L 159 THR L 161 -1 N GLU L 160 O TYR L 177 SHEET 1 AB2 4 THR L 114 PHE L 118 0 SHEET 2 AB2 4 LYS L 129 PHE L 139 -1 O LEU L 135 N THR L 116 SHEET 3 AB2 4 TYR L 172 THR L 181 -1 O SER L 176 N CYS L 134 SHEET 4 AB2 4 SER L 165 LYS L 166 -1 N SER L 165 O ALA L 173 SHEET 1 AB3 4 SER L 153 ALA L 154 0 SHEET 2 AB3 4 LYS L 145 ALA L 150 -1 N ALA L 150 O SER L 153 SHEET 3 AB3 4 TYR L 191 HIS L 197 -1 O GLN L 194 N ALA L 147 SHEET 4 AB3 4 SER L 200 VAL L 206 -1 O SER L 200 N HIS L 197 SSBOND 1 CYS H 22 CYS H 92 1555 1555 2.04 SSBOND 2 CYS H 140 CYS H 196 1555 1555 2.03 SSBOND 3 CYS L 23 CYS L 88 1555 1555 2.03 SSBOND 4 CYS L 134 CYS L 193 1555 1555 2.02 CISPEP 1 PHE H 146 PRO H 147 0 -6.70 CISPEP 2 GLU H 148 PRO H 149 0 1.96 CISPEP 3 TYR L 140 PRO L 141 0 -5.97 SITE 1 AC1 6 ARG L 45 GLY L 57 VAL L 58 SER L 59 SITE 2 AC1 6 ARG L 61 PHE L 62 CRYST1 70.074 79.217 184.745 90.00 90.00 90.00 C 2 2 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.014271 0.000000 0.000000 0.00000 SCALE2 0.000000 0.012624 0.000000 0.00000 SCALE3 0.000000 0.000000 0.005413 0.00000