HEADER IMMUNE SYSTEM 23-JAN-17 5UKR TITLE STRUCTURE OF UNLIGANDED ANTI-GP120 CD4BS ANTIBODY DH522.2 FAB IN TITLE 2 COMPLEX WITH A GP120 CORE COMPND MOL_ID: 1; COMPND 2 MOLECULE: DH522.2 FAB FRAGMENT HEAVY CHAIN; COMPND 3 CHAIN: H; COMPND 4 ENGINEERED: YES; COMPND 5 MOL_ID: 2; COMPND 6 MOLECULE: DH522.2 FAB FRAGMENT LIGHT CHAIN; COMPND 7 CHAIN: L; COMPND 8 ENGINEERED: YES; COMPND 9 MOL_ID: 3; COMPND 10 MOLECULE: CHIMERIC B.YU2 GP120 CORE DERIVED FROM HIV-1 ENV; COMPND 11 CHAIN: G; COMPND 12 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MACACA MULATTA; SOURCE 3 ORGANISM_TAXID: 9544; SOURCE 4 EXPRESSION_SYSTEM: HOMO SAPIENS; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 9606; SOURCE 6 EXPRESSION_SYSTEM_CELL_LINE: HEK 293F; SOURCE 7 MOL_ID: 2; SOURCE 8 ORGANISM_SCIENTIFIC: MACACA MULATTA; SOURCE 9 ORGANISM_TAXID: 9544; SOURCE 10 EXPRESSION_SYSTEM: HOMO SAPIENS; SOURCE 11 EXPRESSION_SYSTEM_TAXID: 9606; SOURCE 12 EXPRESSION_SYSTEM_CELL_LINE: HEK 293F; SOURCE 13 MOL_ID: 3; SOURCE 14 ORGANISM_SCIENTIFIC: HUMAN IMMUNODEFICIENCY VIRUS 1; SOURCE 15 ORGANISM_TAXID: 11676; SOURCE 16 EXPRESSION_SYSTEM: HOMO SAPIENS; SOURCE 17 EXPRESSION_SYSTEM_TAXID: 9606; SOURCE 18 EXPRESSION_SYSTEM_CELL_LINE: HEK 293S GNTI-/- KEYWDS HIV GP120 IMMUNE SYSTEM, IMMUNE SYSTEM EXPDTA X-RAY DIFFRACTION AUTHOR N.I.NICELY REVDAT 4 04-OCT-23 5UKR 1 HETSYN REVDAT 3 29-JUL-20 5UKR 1 COMPND REMARK HETNAM LINK REVDAT 3 2 1 SITE REVDAT 2 11-DEC-19 5UKR 1 REMARK REVDAT 1 06-DEC-17 5UKR 0 JRNL AUTH W.B.WILLIAMS,J.ZHANG,C.JIANG,N.I.NICELY,D.FERA,K.LUO, JRNL AUTH 2 M.A.MOODY,H.X.LIAO,S.M.ALAM,T.B.KEPLER,A.RAMESH,K.WIEHE, JRNL AUTH 3 J.A.HOLLAND,T.BRADLEY,N.VANDERGRIFT,K.O.SAUNDERS,R.PARKS, JRNL AUTH 4 A.FOULGER,S.M.XIA,M.BONSIGNORI,D.C.MONTEFIORI,M.LOUDER, JRNL AUTH 5 A.EATON,S.SANTRA,R.SCEARCE,L.SUTHERLAND,A.NEWMAN, JRNL AUTH 6 H.BOUTON-VERVILLE,C.BOWMAN,H.BOMZE,F.GAO,D.J.MARSHALL, JRNL AUTH 7 J.F.WHITESIDES,X.NIE,G.KELSOE,S.G.REED,C.B.FOX,K.CLARY, JRNL AUTH 8 M.KOUTSOUKOS,D.FRANCO,J.R.MASCOLA,S.C.HARRISON,B.F.HAYNES, JRNL AUTH 9 L.VERKOCZY JRNL TITL INITIATION OF HIV NEUTRALIZING B CELL LINEAGES WITH JRNL TITL 2 SEQUENTIAL ENVELOPE IMMUNIZATIONS. JRNL REF NAT COMMUN V. 8 1732 2017 JRNL REFN ESSN 2041-1723 JRNL PMID 29170366 JRNL DOI 10.1038/S41467-017-01336-3 REMARK 2 REMARK 2 RESOLUTION. 2.71 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.9_1692 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.71 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 49.85 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.360 REMARK 3 COMPLETENESS FOR RANGE (%) : 98.2 REMARK 3 NUMBER OF REFLECTIONS : 25574 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.206 REMARK 3 R VALUE (WORKING SET) : 0.201 REMARK 3 FREE R VALUE : 0.265 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 7.820 REMARK 3 FREE R VALUE TEST SET COUNT : 2000 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 49.8564 - 6.5322 0.94 1749 149 0.2301 0.2833 REMARK 3 2 6.5322 - 5.1865 0.96 1696 143 0.1958 0.2518 REMARK 3 3 5.1865 - 4.5314 0.97 1692 144 0.1502 0.1970 REMARK 3 4 4.5314 - 4.1173 0.97 1681 142 0.1555 0.2260 REMARK 3 5 4.1173 - 3.8223 0.99 1677 142 0.1801 0.2528 REMARK 3 6 3.8223 - 3.5970 1.00 1703 145 0.1932 0.2191 REMARK 3 7 3.5970 - 3.4169 1.00 1691 144 0.1964 0.2421 REMARK 3 8 3.4169 - 3.2682 1.00 1686 143 0.2095 0.2804 REMARK 3 9 3.2682 - 3.1424 1.00 1693 143 0.2230 0.3423 REMARK 3 10 3.1424 - 3.0340 1.00 1697 145 0.2443 0.3445 REMARK 3 11 3.0340 - 2.9392 1.00 1692 143 0.2522 0.3050 REMARK 3 12 2.9392 - 2.8551 1.00 1674 141 0.2435 0.3497 REMARK 3 13 2.8551 - 2.7800 1.00 1667 142 0.2514 0.3275 REMARK 3 14 2.7800 - 2.7122 0.93 1576 134 0.2584 0.3385 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.360 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 27.380 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.008 5048 REMARK 3 ANGLE : 1.267 6856 REMARK 3 CHIRALITY : 0.052 801 REMARK 3 PLANARITY : 0.005 868 REMARK 3 DIHEDRAL : 14.906 1778 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 6 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: (CHAIN G AND RESID 90:253) REMARK 3 ORIGIN FOR THE GROUP (A): 4.6799 85.0187 9.6151 REMARK 3 T TENSOR REMARK 3 T11: 1.0058 T22: 0.8006 REMARK 3 T33: 0.3937 T12: -0.0652 REMARK 3 T13: 0.1223 T23: -0.0009 REMARK 3 L TENSOR REMARK 3 L11: 1.7233 L22: 0.7751 REMARK 3 L33: 1.8222 L12: -0.6032 REMARK 3 L13: 0.2700 L23: -0.6986 REMARK 3 S TENSOR REMARK 3 S11: 0.2754 S12: 0.5698 S13: -0.2684 REMARK 3 S21: -0.5824 S22: -0.1317 S23: 0.0138 REMARK 3 S31: -0.0092 S32: 0.0733 S33: -0.1517 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: (CHAIN G AND RESID 254:388) REMARK 3 ORIGIN FOR THE GROUP (A): -12.5422 88.9579 19.2473 REMARK 3 T TENSOR REMARK 3 T11: 0.9381 T22: 0.6583 REMARK 3 T33: 0.3369 T12: -0.0407 REMARK 3 T13: -0.1191 T23: -0.0126 REMARK 3 L TENSOR REMARK 3 L11: 2.0998 L22: 1.6005 REMARK 3 L33: 2.1819 L12: 0.0664 REMARK 3 L13: -0.0663 L23: 0.8167 REMARK 3 S TENSOR REMARK 3 S11: -0.0358 S12: 0.5460 S13: -0.1107 REMARK 3 S21: -0.6905 S22: -0.0519 S23: 0.1165 REMARK 3 S31: -0.4493 S32: -0.3518 S33: 0.0797 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: (CHAIN H AND RESID 1:115) REMARK 3 ORIGIN FOR THE GROUP (A): -3.1465 86.2963 48.4767 REMARK 3 T TENSOR REMARK 3 T11: 0.1712 T22: 0.1937 REMARK 3 T33: 0.2211 T12: -0.0392 REMARK 3 T13: 0.0277 T23: -0.0177 REMARK 3 L TENSOR REMARK 3 L11: 1.0955 L22: 3.2173 REMARK 3 L33: 3.0755 L12: -0.1111 REMARK 3 L13: 0.2404 L23: -1.1566 REMARK 3 S TENSOR REMARK 3 S11: 0.1191 S12: -0.0660 S13: -0.1059 REMARK 3 S21: -0.4290 S22: -0.0230 S23: 0.0388 REMARK 3 S31: -0.0118 S32: -0.0694 S33: -0.0700 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: (CHAIN H AND RESID 116:215) REMARK 3 ORIGIN FOR THE GROUP (A): 10.3064 88.1805 76.5686 REMARK 3 T TENSOR REMARK 3 T11: 0.2448 T22: 0.2598 REMARK 3 T33: 0.3298 T12: 0.0494 REMARK 3 T13: 0.0132 T23: -0.0060 REMARK 3 L TENSOR REMARK 3 L11: 2.4445 L22: 4.5312 REMARK 3 L33: 2.0517 L12: 0.3709 REMARK 3 L13: -0.1346 L23: -0.6175 REMARK 3 S TENSOR REMARK 3 S11: 0.0406 S12: -0.2917 S13: 0.3470 REMARK 3 S21: 0.3231 S22: -0.0369 S23: 0.1063 REMARK 3 S31: -0.4187 S32: -0.1912 S33: 0.0002 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: (CHAIN L AND RESID 3:107) REMARK 3 ORIGIN FOR THE GROUP (A): 16.0267 87.6934 39.7460 REMARK 3 T TENSOR REMARK 3 T11: 0.4420 T22: 0.4261 REMARK 3 T33: 0.4048 T12: -0.2265 REMARK 3 T13: 0.2494 T23: -0.1458 REMARK 3 L TENSOR REMARK 3 L11: 3.0893 L22: 1.1275 REMARK 3 L33: 0.7804 L12: -0.3606 REMARK 3 L13: 0.1752 L23: -0.3216 REMARK 3 S TENSOR REMARK 3 S11: 0.0864 S12: 0.1116 S13: 0.0187 REMARK 3 S21: -0.5529 S22: 0.2341 S23: -0.4771 REMARK 3 S31: -0.6297 S32: 0.4427 S33: -0.1863 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: (CHAIN L AND RESID 108:208) REMARK 3 ORIGIN FOR THE GROUP (A): 24.2034 79.2629 76.4528 REMARK 3 T TENSOR REMARK 3 T11: 0.2349 T22: 0.2958 REMARK 3 T33: 0.5536 T12: 0.0947 REMARK 3 T13: -0.0255 T23: 0.0089 REMARK 3 L TENSOR REMARK 3 L11: 2.0096 L22: 2.6324 REMARK 3 L33: 2.9789 L12: 0.6125 REMARK 3 L13: -1.1675 L23: 0.8588 REMARK 3 S TENSOR REMARK 3 S11: -0.1795 S12: -0.1652 S13: -0.1474 REMARK 3 S21: 0.3385 S22: 0.0268 S23: -0.8078 REMARK 3 S31: 0.3314 S32: 0.2869 S33: 0.1554 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5UKR COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 25-JAN-17. REMARK 100 THE DEPOSITION ID IS D_1000226042. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 10-MAR-16 REMARK 200 TEMPERATURE (KELVIN) : 93 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 22-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 300 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 25631 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.700 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.6 REMARK 200 DATA REDUNDANCY : 4.800 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.14000 REMARK 200 FOR THE DATA SET : 13.5000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: THE STARTING MODEL FOR THE FAB COMPONENT WAS 5UKP. REMARK 200 THE STARTING MODEL FOR THE GP120 COMPONENT WAS PDB 4R4H. REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 57.40 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.88 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M MES PH 6.5, 12% PEG 20,000, REMARK 280 VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 25.42550 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 126.11400 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 35.98650 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 126.11400 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 25.42550 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 35.98650 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 6950 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 29930 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -11.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: H, L, G REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 SER H 127 REMARK 465 SER H 128 REMARK 465 ARG H 129 REMARK 465 SER H 130 REMARK 465 THR H 131 REMARK 465 SER H 132 REMARK 465 CYS H 216 REMARK 465 GLY H 217 REMARK 465 GLY H 218 REMARK 465 GLN L 1 REMARK 465 SER L 2 REMARK 465 ALA L 209 REMARK 465 GLU L 210 REMARK 465 CYS L 211 REMARK 465 SER L 212 REMARK 465 GLY G 79 REMARK 465 ALA G 80 REMARK 465 ARG G 81 REMARK 465 SER G 82 REMARK 465 GLU G 83 REMARK 465 VAL G 84 REMARK 465 LYS G 85 REMARK 465 LEU G 86 REMARK 465 GLU G 87 REMARK 465 ASN G 88 REMARK 465 VAL G 89 REMARK 465 LEU G 116 REMARK 465 LYS G 117 REMARK 465 PRO G 118 REMARK 465 CYS G 119 REMARK 465 VAL G 120 REMARK 465 LYS G 121 REMARK 465 LEU G 122 REMARK 465 THR G 123 REMARK 465 PRO G 124 REMARK 465 LEU G 125 REMARK 465 CYS G 126 REMARK 465 VAL G 127 REMARK 465 GLY G 128 REMARK 465 ALA G 129 REMARK 465 GLY G 130 REMARK 465 SER G 131 REMARK 465 CYS G 132 REMARK 465 ASN G 133 REMARK 465 THR G 134 REMARK 465 SER G 135 REMARK 465 VAL G 136 REMARK 465 ILE G 137 REMARK 465 THR G 138 REMARK 465 GLN G 139 REMARK 465 ALA G 140 REMARK 465 CYS G 141 REMARK 465 PRO G 142 REMARK 465 LYS G 143 REMARK 465 VAL G 144 REMARK 465 SER G 145 REMARK 465 PHE G 146 REMARK 465 GLU G 147 REMARK 465 PRO G 148 REMARK 465 ILE G 149 REMARK 465 PRO G 150 REMARK 465 ILE G 151 REMARK 465 HIS G 152 REMARK 465 TYR G 153 REMARK 465 CYS G 154 REMARK 465 ALA G 155 REMARK 465 PRO G 156 REMARK 465 ALA G 157 REMARK 465 GLY G 158 REMARK 465 PHE G 159 REMARK 465 LYS G 167 REMARK 465 LYS G 168 REMARK 465 VAL G 181 REMARK 465 GLN G 182 REMARK 465 CYS G 183 REMARK 465 THR G 184 REMARK 465 HIS G 185 REMARK 465 GLY G 186 REMARK 465 ALA G 202 REMARK 465 GLU G 203 REMARK 465 GLU G 204 REMARK 465 GLU G 205 REMARK 465 ILE G 206 REMARK 465 GLN G 259 REMARK 465 PHE G 260 REMARK 465 GLY G 261 REMARK 465 ASN G 262 REMARK 465 TRP G 300 REMARK 465 ASN G 301 REMARK 465 ASP G 302 REMARK 465 THR G 303 REMARK 465 ARG G 304 REMARK 465 LYS G 305 REMARK 465 LEU G 306 REMARK 465 ASN G 307 REMARK 465 ASN G 308 REMARK 465 THR G 309 REMARK 465 GLY G 310 REMARK 465 TRP G 326 REMARK 465 GLN G 327 REMARK 465 GLU G 328 REMARK 465 VAL G 329 REMARK 465 GLY G 330 REMARK 465 LYS G 331 REMARK 465 ALA G 332 REMARK 465 MET G 333 REMARK 465 TYR G 334 REMARK 465 ALA G 335 REMARK 465 PRO G 336 REMARK 465 PRO G 337 REMARK 465 ILE G 338 REMARK 465 ARG G 339 REMARK 465 GLY G 340 REMARK 465 GLN G 341 REMARK 465 ILE G 342 REMARK 465 LYS G 359 REMARK 465 ASP G 360 REMARK 465 THR G 361 REMARK 465 LYS G 389 REMARK 465 ILE G 390 REMARK 465 GLU G 391 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 ND2 ASN G 239 O5 NAG G 404 2.14 REMARK 500 ND2 ASN G 293 O5 NAG G 405 2.15 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER H 15 -7.96 75.05 REMARK 500 PHE H 54 -2.67 -152.11 REMARK 500 ARG H 66 21.43 -140.89 REMARK 500 ASN H 75 -22.58 70.85 REMARK 500 ALA H 88 164.97 179.60 REMARK 500 SER H 98 -94.07 -96.72 REMARK 500 ASP H 144 66.49 67.14 REMARK 500 THR H 160 -55.07 -134.43 REMARK 500 THR H 191 -55.66 -120.29 REMARK 500 ASP L 27B -82.30 -119.05 REMARK 500 VAL L 51 -48.91 65.62 REMARK 500 SER L 59 172.94 -49.97 REMARK 500 GLU L 81 2.80 -66.96 REMARK 500 ASP L 151 16.52 58.74 REMARK 500 SER L 190 103.89 -171.66 REMARK 500 GLU L 198 73.17 45.44 REMARK 500 ASN G 94 93.13 -169.62 REMARK 500 ASN G 170 8.43 98.44 REMARK 500 THR G 172 -169.03 -76.18 REMARK 500 PRO G 189 44.76 -80.20 REMARK 500 GLN G 194 -57.87 64.78 REMARK 500 ASN G 212 104.50 -162.88 REMARK 500 CYS G 285 80.17 -161.93 REMARK 500 ASN G 324 -55.74 -120.95 REMARK 500 LYS G 384 42.86 -92.24 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 5UKO RELATED DB: PDB REMARK 900 RELATED ID: 5UKP RELATED DB: PDB REMARK 900 RELATED ID: 5UKQ RELATED DB: PDB REMARK 900 RELATED ID: 5UKN RELATED DB: PDB DBREF 5UKR H 1 218 PDB 5UKR 5UKR 1 218 DBREF 5UKR L 1 212 PDB 5UKR 5UKR 1 212 DBREF 5UKR G 79 391 PDB 5UKR 5UKR 79 391 SEQRES 1 H 230 GLN VAL GLN LEU GLN GLU SER GLY PRO GLY LEU VAL LYS SEQRES 2 H 230 PRO SER GLU THR LEU SER LEU THR CYS ALA VAL SER GLY SEQRES 3 H 230 GLY SER ILE GLY ASP ASP TYR TYR TRP ASN TRP ILE ARG SEQRES 4 H 230 GLN SER PRO GLY LYS GLY LEU GLU TRP ILE GLY SER ILE SEQRES 5 H 230 TYR GLY SER PHE GLY GLY THR ASN PHE ASN PRO SER LEU SEQRES 6 H 230 LYS ASN ARG VAL THR ILE SER MET ASP THR SER ASN ASN SEQRES 7 H 230 GLN VAL SER LEU LYS LEU ASN SER VAL THR ALA ALA ASP SEQRES 8 H 230 THR ALA VAL TYR TYR CYS ALA ARG GLY SER HIS SER ILE SEQRES 9 H 230 VAL VAL LEU PHE GLY TYR TYR PHE ASP TYR TRP GLY GLN SEQRES 10 H 230 GLY VAL LEU VAL THR VAL SER SER ALA SER THR LYS GLY SEQRES 11 H 230 PRO SER VAL PHE PRO LEU ALA PRO SER SER ARG SER THR SEQRES 12 H 230 SER GLU SER THR ALA ALA LEU GLY CYS LEU VAL LYS ASP SEQRES 13 H 230 TYR PHE PRO GLU PRO VAL THR VAL SER TRP ASN SER GLY SEQRES 14 H 230 SER LEU THR SER GLY VAL HIS THR PHE PRO ALA VAL LEU SEQRES 15 H 230 GLN SER SER GLY LEU TYR SER LEU SER SER VAL VAL THR SEQRES 16 H 230 VAL PRO SER SER SER LEU GLY THR GLN THR TYR VAL CYS SEQRES 17 H 230 ASN VAL ASN HIS LYS PRO SER ASN THR LYS VAL ASP LYS SEQRES 18 H 230 ARG VAL GLU ILE LYS THR CYS GLY GLY SEQRES 1 L 216 GLN SER ALA LEU THR GLN PRO PRO SER VAL SER LYS SER SEQRES 2 L 216 LEU GLY GLN SER VAL THR ILE SER CYS SER GLY THR THR SEQRES 3 L 216 ASN ASP ILE GLY ALA TYR ASN GLY VAL SER TRP TYR GLN SEQRES 4 L 216 HIS HIS SER ASP THR ALA PRO ARG LEU LEU ILE TYR GLU SEQRES 5 L 216 VAL ASN LYS ARG PRO SER GLY VAL SER ASP ARG PHE SER SEQRES 6 L 216 GLY SER LYS SER GLY ASN THR ALA SER LEU THR ILE SER SEQRES 7 L 216 GLY LEU GLN ALA GLU ASP GLU ALA ASP TYR TYR CYS GLY SEQRES 8 L 216 SER TYR ARG SER GLY SER THR TRP VAL PHE GLY GLY GLY SEQRES 9 L 216 THR ARG LEU THR VAL LEU GLY GLN PRO LYS ALA SER PRO SEQRES 10 L 216 THR VAL THR LEU PHE PRO PRO SER SER GLU GLU LEU GLN SEQRES 11 L 216 ALA ASN LYS ALA THR LEU VAL CYS LEU ILE SER ASP PHE SEQRES 12 L 216 TYR PRO GLY VAL VAL LYS VAL ALA TRP LYS ALA ASP GLY SEQRES 13 L 216 SER ALA VAL ASN ALA GLY VAL GLU THR THR THR PRO SER SEQRES 14 L 216 LYS GLN SER ASN ASN LYS TYR ALA ALA SER SER TYR LEU SEQRES 15 L 216 SER LEU THR SER ASP GLN TRP LYS SER HIS LYS SER TYR SEQRES 16 L 216 SER CYS GLN VAL THR HIS GLU GLY SER THR VAL GLU LYS SEQRES 17 L 216 THR VAL ALA PRO ALA GLU CYS SER SEQRES 1 G 313 GLY ALA ARG SER GLU VAL LYS LEU GLU ASN VAL THR GLU SEQRES 2 G 313 ASN PHE ASN MET TRP LYS ASN ASN MET VAL GLU GLN MET SEQRES 3 G 313 HIS GLU ASP ILE ILE SER LEU TRP ASP GLN SER LEU LYS SEQRES 4 G 313 PRO CYS VAL LYS LEU THR PRO LEU CYS VAL GLY ALA GLY SEQRES 5 G 313 SER CYS ASN THR SER VAL ILE THR GLN ALA CYS PRO LYS SEQRES 6 G 313 VAL SER PHE GLU PRO ILE PRO ILE HIS TYR CYS ALA PRO SEQRES 7 G 313 ALA GLY PHE ALA ILE LEU LYS CYS ASN ASP LYS LYS PHE SEQRES 8 G 313 ASN GLY THR GLY PRO CYS THR ASN VAL SER THR VAL GLN SEQRES 9 G 313 CYS THR HIS GLY ILE ARG PRO VAL VAL SER THR GLN LEU SEQRES 10 G 313 LEU LEU ASN GLY SER LEU ALA GLU GLU GLU ILE VAL ILE SEQRES 11 G 313 ARG SER GLU ASN PHE THR ASN ASN ALA LYS THR ILE ILE SEQRES 12 G 313 VAL GLN LEU ASN GLU SER VAL VAL ILE ASN CYS THR GLY SEQRES 13 G 313 ALA GLY HIS CYS ASN LEU SER LYS THR GLN TRP GLU ASN SEQRES 14 G 313 THR LEU GLU GLN ILE ALA ILE LYS LEU LYS GLU GLN PHE SEQRES 15 G 313 GLY ASN ASN LYS THR ILE ILE PHE ASN PRO SER SER GLY SEQRES 16 G 313 GLY ASP PRO GLU ILE VAL THR HIS SER PHE ASN CYS GLY SEQRES 17 G 313 GLY GLU PHE PHE TYR CYS ASN SER THR GLN LEU PHE THR SEQRES 18 G 313 TRP ASN ASP THR ARG LYS LEU ASN ASN THR GLY ARG ASN SEQRES 19 G 313 ILE THR LEU PRO CYS ARG ILE LYS GLN ILE ILE ASN MET SEQRES 20 G 313 TRP GLN GLU VAL GLY LYS ALA MET TYR ALA PRO PRO ILE SEQRES 21 G 313 ARG GLY GLN ILE ARG CYS SER SER ASN ILE THR GLY LEU SEQRES 22 G 313 LEU LEU THR ARG ASP GLY GLY LYS ASP THR ASN GLY THR SEQRES 23 G 313 GLU ILE PHE ARG PRO GLY GLY GLY ASP MET ARG ASP ASN SEQRES 24 G 313 TRP ARG SER GLU LEU TYR LYS TYR LYS VAL VAL LYS ILE SEQRES 25 G 313 GLU HET NAG G 401 14 HET NAG G 402 14 HET NAG G 403 14 HET NAG G 404 14 HET NAG G 405 14 HET NAG G 406 14 HETNAM NAG 2-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE HETSYN NAG N-ACETYL-BETA-D-GLUCOSAMINE; 2-ACETAMIDO-2-DEOXY-BETA- HETSYN 2 NAG D-GLUCOSE; 2-ACETAMIDO-2-DEOXY-D-GLUCOSE; 2-ACETAMIDO- HETSYN 3 NAG 2-DEOXY-GLUCOSE; N-ACETYL-D-GLUCOSAMINE FORMUL 4 NAG 6(C8 H15 N O6) FORMUL 10 HOH *17(H2 O) HELIX 1 AA1 LEU H 63 ASN H 65 5 3 HELIX 2 AA2 THR H 83 THR H 87 5 5 HELIX 3 AA3 ILE H 99 GLY H 100D 1 6 HELIX 4 AA4 SER H 156 SER H 158 5 3 HELIX 5 AA5 SER H 187 LEU H 189 5 3 HELIX 6 AA6 LYS H 201 ASN H 204 5 4 HELIX 7 AA7 GLN L 79 GLU L 83 5 5 HELIX 8 AA8 SER L 121 GLN L 126 1 6 HELIX 9 AA9 SER L 182 SER L 187 1 6 HELIX 10 AB1 ASN G 94 LYS G 97 5 4 HELIX 11 AB2 ASN G 98 TRP G 112 1 15 HELIX 12 AB3 LYS G 242 LYS G 257 1 16 HELIX 13 AB4 ASP G 275 THR G 280 1 6 HELIX 14 AB5 MET G 374 SER G 380 1 7 HELIX 15 AB6 GLU G 381 TYR G 383 5 3 SHEET 1 AA1 4 GLN H 3 SER H 7 0 SHEET 2 AA1 4 LEU H 18 SER H 25 -1 O SER H 25 N GLN H 3 SHEET 3 AA1 4 GLN H 77 LEU H 82 -1 O VAL H 78 N CYS H 22 SHEET 4 AA1 4 VAL H 67 ASP H 72 -1 N ASP H 72 O GLN H 77 SHEET 1 AA2 6 LEU H 11 VAL H 12 0 SHEET 2 AA2 6 VAL H 107 VAL H 111 1 O THR H 110 N VAL H 12 SHEET 3 AA2 6 ALA H 88 SER H 96 -1 N TYR H 90 O VAL H 107 SHEET 4 AA2 6 TYR H 34 GLN H 39 -1 N ILE H 37 O TYR H 91 SHEET 5 AA2 6 LEU H 45 TYR H 52 -1 O ILE H 51 N TRP H 35 SHEET 6 AA2 6 THR H 57 PHE H 59 -1 O ASN H 58 N SER H 50 SHEET 1 AA3 4 LEU H 11 VAL H 12 0 SHEET 2 AA3 4 VAL H 107 VAL H 111 1 O THR H 110 N VAL H 12 SHEET 3 AA3 4 ALA H 88 SER H 96 -1 N TYR H 90 O VAL H 107 SHEET 4 AA3 4 TYR H 100F TRP H 103 -1 O TYR H 102 N ARG H 94 SHEET 1 AA4 4 SER H 120 LEU H 124 0 SHEET 2 AA4 4 THR H 135 TYR H 145 -1 O LEU H 141 N PHE H 122 SHEET 3 AA4 4 TYR H 176 PRO H 185 -1 O LEU H 178 N VAL H 142 SHEET 4 AA4 4 VAL H 163 THR H 165 -1 N HIS H 164 O VAL H 181 SHEET 1 AA5 4 SER H 120 LEU H 124 0 SHEET 2 AA5 4 THR H 135 TYR H 145 -1 O LEU H 141 N PHE H 122 SHEET 3 AA5 4 TYR H 176 PRO H 185 -1 O LEU H 178 N VAL H 142 SHEET 4 AA5 4 VAL H 169 LEU H 170 -1 N VAL H 169 O SER H 177 SHEET 1 AA6 3 THR H 151 TRP H 154 0 SHEET 2 AA6 3 VAL H 195 HIS H 200 -1 O ASN H 197 N SER H 153 SHEET 3 AA6 3 THR H 205 ARG H 210 -1 O VAL H 207 N VAL H 198 SHEET 1 AA7 5 SER L 10 SER L 14 0 SHEET 2 AA7 5 THR L 102 LEU L 106A 1 O LEU L 106A N LYS L 13 SHEET 3 AA7 5 ASP L 85 ARG L 92 -1 N TYR L 86 O THR L 102 SHEET 4 AA7 5 VAL L 33 HIS L 38 -1 N SER L 34 O GLY L 89 SHEET 5 AA7 5 ARG L 45 ILE L 48 -1 O ARG L 45 N GLN L 37 SHEET 1 AA8 4 SER L 10 SER L 14 0 SHEET 2 AA8 4 THR L 102 LEU L 106A 1 O LEU L 106A N LYS L 13 SHEET 3 AA8 4 ASP L 85 ARG L 92 -1 N TYR L 86 O THR L 102 SHEET 4 AA8 4 THR L 95A PHE L 98 -1 O VAL L 97 N SER L 90 SHEET 1 AA9 3 VAL L 19 SER L 24 0 SHEET 2 AA9 3 THR L 70 ILE L 75 -1 O ALA L 71 N CYS L 23 SHEET 3 AA9 3 PHE L 62 SER L 67 -1 N SER L 67 O THR L 70 SHEET 1 AB1 4 THR L 114 PHE L 118 0 SHEET 2 AB1 4 LYS L 129 PHE L 139 -1 O VAL L 133 N PHE L 118 SHEET 3 AB1 4 TYR L 172 THR L 181 -1 O SER L 176 N CYS L 134 SHEET 4 AB1 4 VAL L 159 THR L 161 -1 N GLU L 160 O TYR L 177 SHEET 1 AB2 4 THR L 114 PHE L 118 0 SHEET 2 AB2 4 LYS L 129 PHE L 139 -1 O VAL L 133 N PHE L 118 SHEET 3 AB2 4 TYR L 172 THR L 181 -1 O SER L 176 N CYS L 134 SHEET 4 AB2 4 SER L 165 LYS L 166 -1 N SER L 165 O ALA L 173 SHEET 1 AB3 4 SER L 153 ALA L 154 0 SHEET 2 AB3 4 LYS L 145 ALA L 150 -1 N ALA L 150 O SER L 153 SHEET 3 AB3 4 TYR L 191 HIS L 197 -1 O GLN L 194 N ALA L 147 SHEET 4 AB3 4 SER L 200 VAL L 206 -1 O VAL L 202 N VAL L 195 SHEET 1 AB4 3 ASN G 177 VAL G 178 0 SHEET 2 AB4 3 ILE G 161 ASN G 165 -1 N ASN G 165 O ASN G 177 SHEET 3 AB4 3 TYR G 385 VAL G 387 -1 O LYS G 386 N LEU G 162 SHEET 1 AB5 5 LEU G 195 LEU G 197 0 SHEET 2 AB5 5 CYS G 344 ASP G 356 -1 O GLY G 350 N LEU G 196 SHEET 3 AB5 5 ILE G 220 THR G 233 -1 N CYS G 232 O CYS G 344 SHEET 4 AB5 5 THR G 364 PRO G 369 0 SHEET 5 AB5 5 THR G 265 PHE G 268 1 N ILE G 267 O PHE G 367 SHEET 1 AB6 7 ILE G 208 ARG G 209 0 SHEET 2 AB6 7 ILE G 220 THR G 233 -1 O ILE G 221 N ARG G 209 SHEET 3 AB6 7 CYS G 344 ASP G 356 -1 O CYS G 344 N CYS G 232 SHEET 4 AB6 7 HIS G 237 SER G 241 0 SHEET 5 AB6 7 ASN G 312 GLN G 321 -1 O ILE G 313 N LEU G 240 SHEET 6 AB6 7 GLU G 288 CYS G 292 -1 N TYR G 291 O ARG G 318 SHEET 7 AB6 7 HIS G 281 CYS G 285 -1 N PHE G 283 O PHE G 290 SSBOND 1 CYS H 22 CYS H 92 1555 1555 2.05 SSBOND 2 CYS H 140 CYS H 196 1555 1555 2.03 SSBOND 3 CYS L 23 CYS L 88 1555 1555 2.04 SSBOND 4 CYS L 134 CYS L 193 1555 1555 2.04 SSBOND 5 CYS G 164 CYS G 175 1555 1555 2.04 SSBOND 6 CYS G 232 CYS G 238 1555 1555 2.04 SSBOND 7 CYS G 285 CYS G 344 1555 1555 2.04 SSBOND 8 CYS G 292 CYS G 317 1555 1555 2.03 LINK ND2 ASN G 198 C1 NAG G 401 1555 1555 1.45 LINK ND2 ASN G 212 C1 NAG G 402 1555 1555 1.44 LINK ND2 ASN G 231 C1 NAG G 403 1555 1555 1.45 LINK ND2 ASN G 239 C1 NAG G 404 1555 1555 1.45 LINK ND2 ASN G 293 C1 NAG G 405 1555 1555 1.44 LINK ND2 ASN G 347 C1 NAG G 406 1555 1555 1.44 CISPEP 1 PHE H 146 PRO H 147 0 -2.44 CISPEP 2 GLU H 148 PRO H 149 0 1.71 CISPEP 3 SER L 56 GLY L 57 0 -1.30 CISPEP 4 TYR L 140 PRO L 141 0 -4.31 CRYST1 50.851 71.973 252.228 90.00 90.00 90.00 P 21 21 21 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.019665 0.000000 0.000000 0.00000 SCALE2 0.000000 0.013894 0.000000 0.00000 SCALE3 0.000000 0.000000 0.003965 0.00000