HEADER TRANSFERASE 24-JAN-17 5ULH TITLE STRUCTURE OF RNF165 IN COMPLEX WITH A UBCH5B~UB CONJUGATE COMPND MOL_ID: 1; COMPND 2 MOLECULE: UBIQUITIN-CONJUGATING ENZYME E2 D2; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: (E3-INDEPENDENT) E2 UBIQUITIN-CONJUGATING ENZYME D2,E2 COMPND 5 UBIQUITIN-CONJUGATING ENZYME D2,UBIQUITIN CARRIER PROTEIN D2, COMPND 6 UBIQUITIN-CONJUGATING ENZYME E2(17)KB 2,UBIQUITIN-CONJUGATING ENZYME COMPND 7 E2-17 KDA 2,UBIQUITIN-PROTEIN LIGASE D2,P53-REGULATED UBIQUITIN- COMPND 8 CONJUGATING ENZYME 1; COMPND 9 EC: 2.3.2.23,2.3.2.24; COMPND 10 ENGINEERED: YES; COMPND 11 MUTATION: YES; COMPND 12 MOL_ID: 2; COMPND 13 MOLECULE: UBIQUITIN; COMPND 14 CHAIN: B; COMPND 15 ENGINEERED: YES; COMPND 16 MOL_ID: 3; COMPND 17 MOLECULE: E3 UBIQUITIN-PROTEIN LIGASE RNF165; COMPND 18 CHAIN: C; COMPND 19 FRAGMENT: RESIDUES 289-339; COMPND 20 SYNONYM: RING FINGER PROTEIN 165; COMPND 21 EC: 2.3.2.27; COMPND 22 ENGINEERED: YES; COMPND 23 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: UBE2D2, PUBC1, UBC4, UBC5B, UBCH4, UBCH5B; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 511693; SOURCE 8 EXPRESSION_SYSTEM_CELL_LINE: BL21; SOURCE 9 MOL_ID: 2; SOURCE 10 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 11 ORGANISM_COMMON: HUMAN; SOURCE 12 ORGANISM_TAXID: 9606; SOURCE 13 GENE: UBB; SOURCE 14 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 15 EXPRESSION_SYSTEM_TAXID: 511693; SOURCE 16 EXPRESSION_SYSTEM_CELL_LINE: BL21; SOURCE 17 MOL_ID: 3; SOURCE 18 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 19 ORGANISM_COMMON: HUMAN; SOURCE 20 ORGANISM_TAXID: 9606; SOURCE 21 GENE: RNF165; SOURCE 22 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 23 EXPRESSION_SYSTEM_TAXID: 511693; SOURCE 24 EXPRESSION_SYSTEM_CELL_LINE: BL21 KEYWDS OPEN CONFORMATION, BACKSIDE, ISOPEPTIDE-LINKED, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR A.J.MIDDLETON,C.L.DAY,J.D.WRIGHT REVDAT 3 06-MAR-24 5ULH 1 REMARK REVDAT 2 27-SEP-17 5ULH 1 REMARK REVDAT 1 07-JUN-17 5ULH 0 JRNL AUTH A.J.MIDDLETON,J.D.WRIGHT,C.L.DAY JRNL TITL DISCOVERY OF NEW NON-COVALENT UBIQUITIN BINDING SITES ON JRNL TITL 2 UBCH5 JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.95 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0155 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.95 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 56.17 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 3 NUMBER OF REFLECTIONS : 27914 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.190 REMARK 3 R VALUE (WORKING SET) : 0.189 REMARK 3 FREE R VALUE : 0.217 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.200 REMARK 3 FREE R VALUE TEST SET COUNT : 1519 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.95 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.00 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2046 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.95 REMARK 3 BIN R VALUE (WORKING SET) : 0.2640 REMARK 3 BIN FREE R VALUE SET COUNT : 101 REMARK 3 BIN FREE R VALUE : 0.2830 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2190 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 20 REMARK 3 SOLVENT ATOMS : 68 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 37.94 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -1.97000 REMARK 3 B22 (A**2) : -0.80000 REMARK 3 B33 (A**2) : 2.77000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.131 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.124 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.095 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 6.643 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.958 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.942 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2264 ; 0.018 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 2190 ; 0.003 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 3061 ; 1.790 ; 1.978 REMARK 3 BOND ANGLES OTHERS (DEGREES): 5067 ; 1.009 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 273 ; 6.999 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 101 ;33.555 ;24.158 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 408 ;14.271 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 16 ;15.739 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 343 ; 0.095 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2488 ; 0.008 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 486 ; 0.002 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 3 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 0 A 147 REMARK 3 ORIGIN FOR THE GROUP (A): -8.4450 -12.4530 12.1980 REMARK 3 T TENSOR REMARK 3 T11: 0.0898 T22: 0.0972 REMARK 3 T33: 0.0017 T12: 0.0037 REMARK 3 T13: 0.0108 T23: -0.0056 REMARK 3 L TENSOR REMARK 3 L11: 1.5134 L22: 1.2355 REMARK 3 L33: 3.6936 L12: 0.1524 REMARK 3 L13: -0.0106 L23: 0.1858 REMARK 3 S TENSOR REMARK 3 S11: -0.0088 S12: 0.1062 S13: -0.0032 REMARK 3 S21: -0.0696 S22: 0.0001 S23: -0.0155 REMARK 3 S31: -0.0065 S32: -0.1353 S33: 0.0087 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 1 B 75 REMARK 3 ORIGIN FOR THE GROUP (A): 3.0230 -5.4410 -20.6370 REMARK 3 T TENSOR REMARK 3 T11: 0.1816 T22: 0.2389 REMARK 3 T33: 0.1124 T12: 0.0716 REMARK 3 T13: -0.0162 T23: 0.0569 REMARK 3 L TENSOR REMARK 3 L11: 5.5286 L22: 5.6406 REMARK 3 L33: 4.7319 L12: -0.4841 REMARK 3 L13: -0.3939 L23: 1.1743 REMARK 3 S TENSOR REMARK 3 S11: 0.1127 S12: 0.4188 S13: 0.4972 REMARK 3 S21: -0.4425 S22: -0.1332 S23: 0.2834 REMARK 3 S31: -0.4191 S32: -0.2750 S33: 0.0206 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : C 289 C 339 REMARK 3 ORIGIN FOR THE GROUP (A): -6.2760 8.6730 27.0030 REMARK 3 T TENSOR REMARK 3 T11: 0.1243 T22: 0.0726 REMARK 3 T33: 0.0559 T12: 0.0254 REMARK 3 T13: -0.0356 T23: -0.0345 REMARK 3 L TENSOR REMARK 3 L11: 5.3445 L22: 6.6308 REMARK 3 L33: 5.4442 L12: 0.3901 REMARK 3 L13: 0.2651 L23: 0.4430 REMARK 3 S TENSOR REMARK 3 S11: -0.0530 S12: -0.0526 S13: 0.2877 REMARK 3 S21: -0.1706 S22: -0.0145 S23: 0.2834 REMARK 3 S31: -0.2796 S32: -0.2696 S33: 0.0676 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.00 REMARK 3 ION PROBE RADIUS : 0.70 REMARK 3 SHRINKAGE RADIUS : 0.70 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: U VALUES : WITH TLS ADDED HYDROGENS REMARK 3 HAVE BEEN ADDED IN THE RIDING POSITIONS REMARK 4 REMARK 4 5ULH COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 25-JAN-17. REMARK 100 THE DEPOSITION ID IS D_1000226075. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 01-NOV-14 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : AUSTRALIAN SYNCHROTRON REMARK 200 BEAMLINE : MX2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.979 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 29425 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.950 REMARK 200 RESOLUTION RANGE LOW (A) : 56.170 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 7.000 REMARK 200 R MERGE (I) : 0.09700 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 15.0000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER, PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 54.94 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.73 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 200 MM POTASSIUM THIOCYANATE, 20% PEG REMARK 280 3350, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 289K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 29.13900 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 56.16950 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 30.04050 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 56.16950 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 29.13900 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 30.04050 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A -4 REMARK 465 PRO A -3 REMARK 465 LEU A -2 REMARK 465 GLY A -1 REMARK 465 GLY B 76 REMARK 465 GLY C 255 REMARK 465 PRO C 256 REMARK 465 LEU C 257 REMARK 465 GLY C 258 REMARK 465 SER C 259 REMARK 465 GLY C 260 REMARK 465 ALA C 261 REMARK 465 VAL C 262 REMARK 465 GLN C 263 REMARK 465 ASN C 264 REMARK 465 THR C 265 REMARK 465 ILE C 266 REMARK 465 GLU C 267 REMARK 465 ARG C 268 REMARK 465 PHE C 269 REMARK 465 THR C 270 REMARK 465 PHE C 271 REMARK 465 PRO C 272 REMARK 465 HIS C 273 REMARK 465 LYS C 274 REMARK 465 TYR C 275 REMARK 465 LYS C 276 REMARK 465 LYS C 277 REMARK 465 GLY C 278 REMARK 465 LYS C 279 REMARK 465 GLY C 280 REMARK 465 LYS C 281 REMARK 465 LYS C 282 REMARK 465 ASP C 283 REMARK 465 GLU C 284 REMARK 465 GLY C 285 REMARK 465 GLU C 286 REMARK 465 GLU C 287 REMARK 465 SER C 288 REMARK 465 THR C 340 REMARK 465 GLN C 341 REMARK 465 LEU C 342 REMARK 465 GLY C 343 REMARK 465 ALA C 344 REMARK 465 ASP C 345 REMARK 465 SER C 346 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 5 CA - CB - CG ANGL. DEV. = -14.1 DEGREES REMARK 500 ARG A 125 NE - CZ - NH1 ANGL. DEV. = 3.6 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ARG A 90 -106.17 -137.59 REMARK 500 ASN A 114 77.64 -112.31 REMARK 500 ASP C 303 -154.75 -108.84 REMARK 500 ALA C 313 0.83 82.28 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN C 402 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS C 294 SG REMARK 620 2 CYS C 297 SG 112.2 REMARK 620 3 CYS C 320 SG 119.1 110.7 REMARK 620 N 1 2 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN C 401 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS C 312 SG REMARK 620 2 CYS C 331 SG 109.6 REMARK 620 3 CYS C 334 SG 110.9 111.7 REMARK 620 N 1 2 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 202 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SCN A 203 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SCN B 101 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN C 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN C 402 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 5ULF RELATED DB: PDB REMARK 900 RELATED ID: 5ULK RELATED DB: PDB DBREF 5ULH A 1 147 UNP P62837 UB2D2_HUMAN 1 147 DBREF 5ULH B 1 76 UNP P0CG47 UBB_HUMAN 1 76 DBREF 5ULH C 260 346 UNP Q6ZSG1 RN165_HUMAN 255 346 SEQADV 5ULH GLY A -4 UNP P62837 EXPRESSION TAG SEQADV 5ULH PRO A -3 UNP P62837 EXPRESSION TAG SEQADV 5ULH LEU A -2 UNP P62837 EXPRESSION TAG SEQADV 5ULH GLY A -1 UNP P62837 EXPRESSION TAG SEQADV 5ULH SER A 0 UNP P62837 EXPRESSION TAG SEQADV 5ULH SER A 21 UNP P62837 CYS 21 ENGINEERED MUTATION SEQADV 5ULH LYS A 85 UNP P62837 CYS 85 ENGINEERED MUTATION SEQADV 5ULH SER A 107 UNP P62837 CYS 107 ENGINEERED MUTATION SEQADV 5ULH SER A 111 UNP P62837 CYS 111 ENGINEERED MUTATION SEQADV 5ULH GLY C 255 UNP Q6ZSG1 EXPRESSION TAG SEQADV 5ULH PRO C 256 UNP Q6ZSG1 EXPRESSION TAG SEQADV 5ULH LEU C 257 UNP Q6ZSG1 EXPRESSION TAG SEQADV 5ULH GLY C 258 UNP Q6ZSG1 EXPRESSION TAG SEQADV 5ULH SER C 259 UNP Q6ZSG1 EXPRESSION TAG SEQADV 5ULH C UNP Q6ZSG1 ARG 273 DELETION SEQADV 5ULH C UNP Q6ZSG1 ARG 274 DELETION SEQADV 5ULH C UNP Q6ZSG1 PRO 275 DELETION SEQADV 5ULH C UNP Q6ZSG1 GLN 276 DELETION SEQADV 5ULH C UNP Q6ZSG1 ASP 277 DELETION SEQADV 5ULH ALA C 313 UNP Q6ZSG1 MET 313 ENGINEERED MUTATION SEQRES 1 A 152 GLY PRO LEU GLY SER MET ALA LEU LYS ARG ILE HIS LYS SEQRES 2 A 152 GLU LEU ASN ASP LEU ALA ARG ASP PRO PRO ALA GLN SER SEQRES 3 A 152 SER ALA GLY PRO VAL GLY ASP ASP MET PHE HIS TRP GLN SEQRES 4 A 152 ALA THR ILE MET GLY PRO ASN ASP SER PRO TYR GLN GLY SEQRES 5 A 152 GLY VAL PHE PHE LEU THR ILE HIS PHE PRO THR ASP TYR SEQRES 6 A 152 PRO PHE LYS PRO PRO LYS VAL ALA PHE THR THR ARG ILE SEQRES 7 A 152 TYR HIS PRO ASN ILE ASN SER ASN GLY SER ILE LYS LEU SEQRES 8 A 152 ASP ILE LEU ARG SER GLN TRP SER PRO ALA LEU THR ILE SEQRES 9 A 152 SER LYS VAL LEU LEU SER ILE SER SER LEU LEU SER ASP SEQRES 10 A 152 PRO ASN PRO ASP ASP PRO LEU VAL PRO GLU ILE ALA ARG SEQRES 11 A 152 ILE TYR LYS THR ASP ARG GLU LYS TYR ASN ARG ILE ALA SEQRES 12 A 152 ARG GLU TRP THR GLN LYS TYR ALA MET SEQRES 1 B 76 MET GLN ILE PHE VAL LYS THR LEU THR GLY LYS THR ILE SEQRES 2 B 76 THR LEU GLU VAL GLU PRO SER ASP THR ILE GLU ASN VAL SEQRES 3 B 76 LYS ALA LYS ILE GLN ASP LYS GLU GLY ILE PRO PRO ASP SEQRES 4 B 76 GLN GLN ARG LEU ILE PHE ALA GLY LYS GLN LEU GLU ASP SEQRES 5 B 76 GLY ARG THR LEU SER ASP TYR ASN ILE GLN LYS GLU SER SEQRES 6 B 76 THR LEU HIS LEU VAL LEU ARG LEU ARG GLY GLY SEQRES 1 C 92 GLY PRO LEU GLY SER GLY ALA VAL GLN ASN THR ILE GLU SEQRES 2 C 92 ARG PHE THR PHE PRO HIS LYS TYR LYS LYS GLY LYS GLY SEQRES 3 C 92 LYS LYS ASP GLU GLY GLU GLU SER ASP THR ASP GLU LYS SEQRES 4 C 92 CYS THR ILE CYS LEU SER MET LEU GLU ASP GLY GLU ASP SEQRES 5 C 92 VAL ARG ARG LEU PRO CYS ALA HIS LEU PHE HIS GLN LEU SEQRES 6 C 92 CYS VAL ASP GLN TRP LEU ALA MET SER LYS LYS CYS PRO SEQRES 7 C 92 ILE CYS ARG VAL ASP ILE GLU THR GLN LEU GLY ALA ASP SEQRES 8 C 92 SER HET GOL A 201 6 HET GOL A 202 6 HET SCN A 203 3 HET SCN B 101 3 HET ZN C 401 1 HET ZN C 402 1 HETNAM GOL GLYCEROL HETNAM SCN THIOCYANATE ION HETNAM ZN ZINC ION HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 4 GOL 2(C3 H8 O3) FORMUL 6 SCN 2(C N S 1-) FORMUL 8 ZN 2(ZN 2+) FORMUL 10 HOH *68(H2 O) HELIX 1 AA1 SER A 0 ASP A 16 1 17 HELIX 2 AA2 LEU A 86 ARG A 90 5 5 HELIX 3 AA3 THR A 98 ASP A 112 1 15 HELIX 4 AA4 VAL A 120 ASP A 130 1 11 HELIX 5 AA5 ASP A 130 ALA A 146 1 17 HELIX 6 AA6 THR B 22 GLY B 35 1 14 HELIX 7 AA7 PRO B 37 ASP B 39 5 3 HELIX 8 AA8 LEU B 56 ASN B 60 5 5 HELIX 9 AA9 GLN C 318 ALA C 326 1 9 SHEET 1 AA1 4 SER A 21 VAL A 26 0 SHEET 2 AA1 4 ASP A 29 MET A 38 -1 O ASP A 29 N VAL A 26 SHEET 3 AA1 4 VAL A 49 HIS A 55 -1 O ILE A 54 N TRP A 33 SHEET 4 AA1 4 LYS A 66 PHE A 69 -1 O LYS A 66 N HIS A 55 SHEET 1 AA2 5 THR B 12 GLU B 16 0 SHEET 2 AA2 5 GLN B 2 THR B 7 -1 N ILE B 3 O LEU B 15 SHEET 3 AA2 5 THR B 66 LEU B 71 1 O LEU B 67 N LYS B 6 SHEET 4 AA2 5 GLN B 41 PHE B 45 -1 N ILE B 44 O HIS B 68 SHEET 5 AA2 5 LYS B 48 GLN B 49 -1 O LYS B 48 N PHE B 45 SHEET 1 AA3 2 VAL C 307 ARG C 309 0 SHEET 2 AA3 2 LEU C 315 HIS C 317 -1 O PHE C 316 N ARG C 308 LINK SG CYS C 294 ZN ZN C 402 1555 1555 2.25 LINK SG CYS C 297 ZN ZN C 402 1555 1555 2.18 LINK SG CYS C 312 ZN ZN C 401 1555 1555 2.20 LINK SG CYS C 320 ZN ZN C 402 1555 1555 2.23 LINK SG CYS C 331 ZN ZN C 401 1555 1555 2.29 LINK SG CYS C 334 ZN ZN C 401 1555 1555 2.33 CISPEP 1 TYR A 60 PRO A 61 0 11.54 SITE 1 AC1 9 ALA A 14 PRO A 17 SER A 22 HOH A 303 SITE 2 AC1 9 HOH A 336 PHE B 45 ALA B 46 THR B 66 SITE 3 AC1 9 HIS B 68 SITE 1 AC2 7 PRO A 65 LYS A 66 VAL A 67 SER A 83 SITE 2 AC2 7 ILE A 84 LEU A 89 HOH A 316 SITE 1 AC3 8 PHE A 69 THR A 70 THR A 71 ARG A 72 SITE 2 AC3 8 SER A 80 ASN A 81 GLY A 82 HOH A 339 SITE 1 AC4 5 ARG A 125 THR B 7 LEU B 8 VAL B 70 SITE 2 AC4 5 LEU B 71 SITE 1 AC5 4 CYS C 312 HIS C 314 CYS C 331 CYS C 334 SITE 1 AC6 4 CYS C 294 CYS C 297 HIS C 317 CYS C 320 CRYST1 58.278 60.081 112.339 90.00 90.00 90.00 P 21 21 21 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.017159 0.000000 0.000000 0.00000 SCALE2 0.000000 0.016644 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008902 0.00000