HEADER HYDROLASE 25-JAN-17 5ULP TITLE STRUCTURE OF THE NS5 METHYLTRANSFERASE FROM ZIKA BOUND TO MS2042 COMPND MOL_ID: 1; COMPND 2 MOLECULE: MRNA CAP 0-1 NS5-TYPE METHYLTRANSFERASE; COMPND 3 CHAIN: A, B; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ZIKA VIRUS (STRAIN MR 766); SOURCE 3 ORGANISM_COMMON: ZIKV; SOURCE 4 ORGANISM_TAXID: 64320; SOURCE 5 STRAIN: MR 766; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS ZIKA, FLAVIVIRUS, NS5, METHYLTRANSFERASE, MS2042, SAM ANALOG, KEYWDS 2 HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR R.JAIN,A.K.AGGARWAL REVDAT 3 04-OCT-23 5ULP 1 LINK REVDAT 2 31-MAY-17 5ULP 1 JRNL REVDAT 1 17-MAY-17 5ULP 0 JRNL AUTH R.JAIN,K.V.BUTLER,J.COLOMA,J.JIN,A.K.AGGARWAL JRNL TITL DEVELOPMENT OF A S-ADENOSYLMETHIONINE ANALOG THAT INTRUDES JRNL TITL 2 THE RNA-CAP BINDING SITE OF ZIKA METHYLTRANSFERASE. JRNL REF SCI REP V. 7 1632 2017 JRNL REFN ESSN 2045-2322 JRNL PMID 28487506 JRNL DOI 10.1038/S41598-017-01756-7 REMARK 2 REMARK 2 RESOLUTION. 1.55 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (1.10.1_2155: ???) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.55 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 35.72 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 3 NUMBER OF REFLECTIONS : 95009 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.174 REMARK 3 R VALUE (WORKING SET) : 0.173 REMARK 3 FREE R VALUE : 0.199 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.860 REMARK 3 FREE R VALUE TEST SET COUNT : 4620 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 35.7339 - 4.8103 1.00 3052 180 0.1567 0.1610 REMARK 3 2 4.8103 - 3.8195 1.00 3080 136 0.1289 0.1577 REMARK 3 3 3.8195 - 3.3371 1.00 3054 148 0.1439 0.1851 REMARK 3 4 3.3371 - 3.0321 1.00 2998 166 0.1662 0.1823 REMARK 3 5 3.0321 - 2.8149 1.00 3030 174 0.1748 0.2101 REMARK 3 6 2.8149 - 2.6490 1.00 3006 160 0.1796 0.2217 REMARK 3 7 2.6490 - 2.5164 1.00 3040 156 0.1878 0.2334 REMARK 3 8 2.5164 - 2.4069 1.00 2977 162 0.1809 0.1905 REMARK 3 9 2.4069 - 2.3142 1.00 3032 172 0.1771 0.1793 REMARK 3 10 2.3142 - 2.2344 1.00 3032 155 0.1855 0.2409 REMARK 3 11 2.2344 - 2.1645 1.00 2983 152 0.1869 0.2120 REMARK 3 12 2.1645 - 2.1026 1.00 3042 163 0.1856 0.1971 REMARK 3 13 2.1026 - 2.0473 1.00 2989 147 0.1924 0.2355 REMARK 3 14 2.0473 - 1.9974 1.00 3071 127 0.1931 0.2137 REMARK 3 15 1.9974 - 1.9520 1.00 3033 127 0.1914 0.2305 REMARK 3 16 1.9520 - 1.9104 1.00 3053 166 0.2007 0.2160 REMARK 3 17 1.9104 - 1.8722 1.00 2971 159 0.1978 0.2490 REMARK 3 18 1.8722 - 1.8369 1.00 2991 177 0.2015 0.2105 REMARK 3 19 1.8369 - 1.8041 1.00 3009 169 0.1948 0.1951 REMARK 3 20 1.8041 - 1.7735 1.00 2998 153 0.2025 0.2308 REMARK 3 21 1.7735 - 1.7449 1.00 3054 149 0.2128 0.2488 REMARK 3 22 1.7449 - 1.7180 1.00 3004 133 0.2124 0.2145 REMARK 3 23 1.7180 - 1.6928 1.00 3010 143 0.2164 0.2569 REMARK 3 24 1.6928 - 1.6689 1.00 3087 160 0.2166 0.2538 REMARK 3 25 1.6689 - 1.6464 1.00 2944 183 0.2153 0.2588 REMARK 3 26 1.6464 - 1.6250 1.00 2987 148 0.2220 0.2235 REMARK 3 27 1.6250 - 1.6047 1.00 3066 149 0.2265 0.2701 REMARK 3 28 1.6047 - 1.5853 1.00 3033 133 0.2371 0.2841 REMARK 3 29 1.5853 - 1.5669 0.99 2950 131 0.2458 0.2583 REMARK 3 30 1.5669 - 1.5493 0.93 2813 142 0.2632 0.2525 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.160 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 21.400 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.006 4385 REMARK 3 ANGLE : 0.845 5952 REMARK 3 CHIRALITY : 0.052 635 REMARK 3 PLANARITY : 0.005 763 REMARK 3 DIHEDRAL : 16.873 2674 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5ULP COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 09-FEB-17. REMARK 100 THE DEPOSITION ID IS D_1000226086. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 06-DEC-16 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 5.6 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 23-ID-D REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.03324 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS3 S 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 95052 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.550 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 6.300 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.06300 REMARK 200 FOR THE DATA SET : 23.1000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.55 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.58 REMARK 200 COMPLETENESS FOR SHELL (%) : 97.8 REMARK 200 DATA REDUNDANCY IN SHELL : 2.40 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : 0.60000 REMARK 200 FOR SHELL : 2.400 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: AUTO-RICKSHAW REMARK 200 STARTING MODEL: 5KQS REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 56.54 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.83 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.095 M SODIUM SODIUM CITRATE TRIBASIC REMARK 280 DIHYDRATE, PH 5.6, 19 % V/V 2-PROPANOL, 19 % W/V PEG 4K, 5 % V/V REMARK 280 GLYCEROL, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 55.61550 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 1 REMARK 465 GLY A 2 REMARK 465 GLY A 3 REMARK 465 THR A 4 REMARK 465 VAL A 267 REMARK 465 SER A 268 REMARK 465 GLY B 1 REMARK 465 GLY B 2 REMARK 465 GLY B 3 REMARK 465 THR B 4 REMARK 465 VAL B 267 REMARK 465 SER B 268 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 11 NZ REMARK 470 LYS A 28 CE NZ REMARK 470 GLU A 39 CD OE1 OE2 REMARK 470 ARG A 42 CG CD NE CZ NH1 NH2 REMARK 470 LYS A 45 CE NZ REMARK 470 ARG A 125 CG CD NE CZ NH1 NH2 REMARK 470 ARG A 175 NE CZ NH1 NH2 REMARK 470 GLU A 193 CG CD OE1 OE2 REMARK 470 ARG A 200 NE CZ NH1 NH2 REMARK 470 LYS A 226 CG CD CE NZ REMARK 470 LYS A 231 CG CD CE NZ REMARK 470 ARG A 249 NE CZ NH1 NH2 REMARK 470 LYS A 252 CG CD CE NZ REMARK 470 LYS B 28 CE NZ REMARK 470 GLU B 38 CG CD OE1 OE2 REMARK 470 GLU B 39 CD OE1 OE2 REMARK 470 ARG B 42 CD NE CZ NH1 REMARK 470 LYS B 45 CE NZ REMARK 470 ARG B 95 CG CD NE CZ NH1 NH2 REMARK 470 LYS B 105 CD CE NZ REMARK 470 ARG B 175 NE CZ NH1 NH2 REMARK 470 GLU B 193 CD OE1 OE2 REMARK 470 ARG B 201 CZ NH1 NH2 REMARK 470 LYS B 226 CG CD CE NZ REMARK 470 LYS B 231 CD CE NZ REMARK 470 ARG B 249 NE CZ NH1 NH2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH B 607 O HOH B 616 2.10 REMARK 500 O HOH B 649 O HOH B 661 2.14 REMARK 500 O HOH B 510 O HOH B 659 2.16 REMARK 500 O HOH B 591 O HOH B 612 2.17 REMARK 500 OD2 ASP A 245 O HOH A 401 2.18 REMARK 500 O HOH B 413 O HOH B 663 2.19 REMARK 500 O HOH B 533 O HOH B 592 2.19 REMARK 500 N1 URE A 305 O HOH A 402 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 256 129.63 139.32 REMARK 500 ASP B 256 130.83 152.46 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 TYR B 253 GLU B 254 148.89 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A 309 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLY A 107 O REMARK 620 2 HIS A 110 O 84.7 REMARK 620 3 GLU A 112 OE2 104.9 100.6 REMARK 620 4 HOH A 599 O 84.6 168.9 79.3 REMARK 620 5 HOH A 610 O 131.8 84.6 123.2 104.8 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA B 308 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH B 628 O REMARK 620 2 HOH B 691 O 103.9 REMARK 620 N 1 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue KB1 A 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CL A 302 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CL A 303 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CL A 304 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue URE A 305 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue URE A 306 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue URE A 307 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue IPA A 308 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue NA A 309 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue KB1 B 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CL B 302 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue URE B 303 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue URE B 304 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue URE B 305 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue URE B 306 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue URE B 307 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue NA B 308 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 5KQR RELATED DB: PDB REMARK 900 RELATED ID: 5KQS RELATED DB: PDB DBREF 5ULP A 1 268 UNP B3U3M3 B3U3M3_ZIKV 2521 2788 DBREF 5ULP B 1 268 UNP B3U3M3 B3U3M3_ZIKV 2521 2788 SEQRES 1 A 268 GLY GLY GLY THR GLY GLU THR LEU GLY GLU LYS TRP LYS SEQRES 2 A 268 ALA ARG LEU ASN GLN MET SER ALA LEU GLU PHE TYR SER SEQRES 3 A 268 TYR LYS LYS SER GLY ILE THR GLU VAL CYS ARG GLU GLU SEQRES 4 A 268 ALA ARG ARG ALA LEU LYS ASP GLY VAL ALA THR GLY GLY SEQRES 5 A 268 HIS ALA VAL SER ARG GLY SER ALA LYS LEU ARG TRP LEU SEQRES 6 A 268 VAL GLU ARG GLY TYR LEU GLN PRO TYR GLY LYS VAL ILE SEQRES 7 A 268 ASP LEU GLY CYS GLY ARG GLY GLY TRP SER TYR TYR ALA SEQRES 8 A 268 ALA THR ILE ARG LYS VAL GLN GLU VAL LYS GLY TYR THR SEQRES 9 A 268 LYS GLY GLY PRO GLY HIS GLU GLU PRO MET LEU VAL GLN SEQRES 10 A 268 SER TYR GLY TRP ASN ILE VAL ARG LEU LYS SER GLY VAL SEQRES 11 A 268 ASP VAL PHE HIS MET ALA ALA GLU PRO CYS ASP THR LEU SEQRES 12 A 268 LEU CYS ASP ILE GLY GLU SER SER SER SER PRO GLU VAL SEQRES 13 A 268 GLU GLU ALA ARG THR LEU ARG VAL LEU SER MET VAL GLY SEQRES 14 A 268 ASP TRP LEU GLU LYS ARG PRO GLY ALA PHE CYS ILE LYS SEQRES 15 A 268 VAL LEU CYS PRO TYR THR SER THR MET MET GLU THR LEU SEQRES 16 A 268 GLU ARG LEU GLN ARG ARG TYR GLY GLY GLY LEU VAL ARG SEQRES 17 A 268 VAL PRO LEU SER ARG ASN SER THR HIS GLU MET TYR TRP SEQRES 18 A 268 VAL SER GLY ALA LYS SER ASN THR ILE LYS SER VAL SER SEQRES 19 A 268 THR THR SER GLN LEU LEU LEU GLY ARG MET ASP GLY PRO SEQRES 20 A 268 ARG ARG PRO VAL LYS TYR GLU GLU ASP VAL ASN LEU GLY SEQRES 21 A 268 SER GLY THR ARG ALA VAL VAL SER SEQRES 1 B 268 GLY GLY GLY THR GLY GLU THR LEU GLY GLU LYS TRP LYS SEQRES 2 B 268 ALA ARG LEU ASN GLN MET SER ALA LEU GLU PHE TYR SER SEQRES 3 B 268 TYR LYS LYS SER GLY ILE THR GLU VAL CYS ARG GLU GLU SEQRES 4 B 268 ALA ARG ARG ALA LEU LYS ASP GLY VAL ALA THR GLY GLY SEQRES 5 B 268 HIS ALA VAL SER ARG GLY SER ALA LYS LEU ARG TRP LEU SEQRES 6 B 268 VAL GLU ARG GLY TYR LEU GLN PRO TYR GLY LYS VAL ILE SEQRES 7 B 268 ASP LEU GLY CYS GLY ARG GLY GLY TRP SER TYR TYR ALA SEQRES 8 B 268 ALA THR ILE ARG LYS VAL GLN GLU VAL LYS GLY TYR THR SEQRES 9 B 268 LYS GLY GLY PRO GLY HIS GLU GLU PRO MET LEU VAL GLN SEQRES 10 B 268 SER TYR GLY TRP ASN ILE VAL ARG LEU LYS SER GLY VAL SEQRES 11 B 268 ASP VAL PHE HIS MET ALA ALA GLU PRO CYS ASP THR LEU SEQRES 12 B 268 LEU CYS ASP ILE GLY GLU SER SER SER SER PRO GLU VAL SEQRES 13 B 268 GLU GLU ALA ARG THR LEU ARG VAL LEU SER MET VAL GLY SEQRES 14 B 268 ASP TRP LEU GLU LYS ARG PRO GLY ALA PHE CYS ILE LYS SEQRES 15 B 268 VAL LEU CYS PRO TYR THR SER THR MET MET GLU THR LEU SEQRES 16 B 268 GLU ARG LEU GLN ARG ARG TYR GLY GLY GLY LEU VAL ARG SEQRES 17 B 268 VAL PRO LEU SER ARG ASN SER THR HIS GLU MET TYR TRP SEQRES 18 B 268 VAL SER GLY ALA LYS SER ASN THR ILE LYS SER VAL SER SEQRES 19 B 268 THR THR SER GLN LEU LEU LEU GLY ARG MET ASP GLY PRO SEQRES 20 B 268 ARG ARG PRO VAL LYS TYR GLU GLU ASP VAL ASN LEU GLY SEQRES 21 B 268 SER GLY THR ARG ALA VAL VAL SER HET KB1 A 301 34 HET CL A 302 1 HET CL A 303 1 HET CL A 304 1 HET URE A 305 4 HET URE A 306 4 HET URE A 307 4 HET IPA A 308 4 HET NA A 309 1 HET KB1 B 301 34 HET CL B 302 1 HET URE B 303 4 HET URE B 304 4 HET URE B 305 4 HET URE B 306 4 HET URE B 307 4 HET NA B 308 1 HETNAM KB1 5'-{[(3S)-3-AMINO-3-CARBOXYPROPYL][(4-FLUOROPHENYL) HETNAM 2 KB1 METHYL]AMINO}-5'-DEOXYADENOSINE HETNAM CL CHLORIDE ION HETNAM URE UREA HETNAM IPA ISOPROPYL ALCOHOL HETNAM NA SODIUM ION HETSYN IPA 2-PROPANOL FORMUL 3 KB1 2(C21 H26 F N7 O5) FORMUL 4 CL 4(CL 1-) FORMUL 7 URE 8(C H4 N2 O) FORMUL 10 IPA C3 H8 O FORMUL 11 NA 2(NA 1+) FORMUL 20 HOH *601(H2 O) HELIX 1 AA1 THR A 7 MET A 19 1 13 HELIX 2 AA2 SER A 20 LYS A 29 1 10 HELIX 3 AA3 ARG A 37 ASP A 46 1 10 HELIX 4 AA4 ARG A 57 ARG A 68 1 12 HELIX 5 AA5 GLY A 85 ALA A 92 1 8 HELIX 6 AA6 GLY A 120 ASN A 122 5 3 HELIX 7 AA7 ASP A 131 MET A 135 5 5 HELIX 8 AA8 SER A 153 GLU A 173 1 21 HELIX 9 AA9 THR A 188 GLY A 203 1 16 HELIX 10 AB1 ASN A 228 ARG A 243 1 16 HELIX 11 AB2 THR B 7 GLN B 18 1 12 HELIX 12 AB3 SER B 20 LYS B 29 1 10 HELIX 13 AB4 ARG B 37 ASP B 46 1 10 HELIX 14 AB5 ARG B 57 ARG B 68 1 12 HELIX 15 AB6 GLY B 85 THR B 93 1 9 HELIX 16 AB7 GLY B 120 ASN B 122 5 3 HELIX 17 AB8 ASP B 131 MET B 135 5 5 HELIX 18 AB9 SER B 153 GLU B 173 1 21 HELIX 19 AC1 THR B 188 GLY B 203 1 16 HELIX 20 AC2 ASN B 228 ARG B 243 1 16 SHEET 1 AA1 2 THR A 33 VAL A 35 0 SHEET 2 AA1 2 LYS A 252 GLU A 254 1 O LYS A 252 N GLU A 34 SHEET 1 AA2 7 VAL A 124 LYS A 127 0 SHEET 2 AA2 7 VAL A 97 TYR A 103 1 N VAL A 100 O ARG A 125 SHEET 3 AA2 7 GLY A 75 LEU A 80 1 N VAL A 77 O GLU A 99 SHEET 4 AA2 7 THR A 142 CYS A 145 1 O LEU A 144 N ILE A 78 SHEET 5 AA2 7 ALA A 178 VAL A 183 1 O LYS A 182 N CYS A 145 SHEET 6 AA2 7 MET A 219 VAL A 222 -1 O MET A 219 N VAL A 183 SHEET 7 AA2 7 GLY A 205 VAL A 207 -1 N GLY A 205 O VAL A 222 SHEET 1 AA3 2 THR B 33 CYS B 36 0 SHEET 2 AA3 2 LYS B 252 GLU B 255 1 O LYS B 252 N GLU B 34 SHEET 1 AA4 7 VAL B 124 LYS B 127 0 SHEET 2 AA4 7 VAL B 97 TYR B 103 1 N VAL B 100 O ARG B 125 SHEET 3 AA4 7 GLY B 75 LEU B 80 1 N VAL B 77 O GLU B 99 SHEET 4 AA4 7 THR B 142 CYS B 145 1 O LEU B 144 N ILE B 78 SHEET 5 AA4 7 ALA B 178 VAL B 183 1 O LYS B 182 N CYS B 145 SHEET 6 AA4 7 MET B 219 VAL B 222 -1 O MET B 219 N VAL B 183 SHEET 7 AA4 7 GLY B 205 VAL B 207 -1 N VAL B 207 O TYR B 220 SSBOND 1 CYS A 36 CYS B 36 1555 1555 2.03 LINK O GLY A 107 NA NA A 309 1555 1555 2.36 LINK O HIS A 110 NA NA A 309 1555 1555 2.30 LINK OE2 GLU A 112 NA NA A 309 1555 1555 2.63 LINK NA NA A 309 O HOH A 599 1555 1455 2.40 LINK NA NA A 309 O HOH A 610 1555 1555 2.49 LINK NA NA B 308 O HOH B 628 1555 1555 3.05 LINK NA NA B 308 O HOH B 691 1555 1555 2.88 CISPEP 1 GLY B 5 GLU B 6 0 1.24 SITE 1 AC1 27 SER A 56 GLY A 58 GLY A 81 CYS A 82 SITE 2 AC1 27 GLY A 83 GLY A 86 TRP A 87 THR A 104 SITE 3 AC1 27 LYS A 105 HIS A 110 VAL A 130 ASP A 131 SITE 4 AC1 27 VAL A 132 PHE A 133 ASP A 146 GLY A 148 SITE 5 AC1 27 LYS A 182 CL A 304 IPA A 308 HOH A 428 SITE 6 AC1 27 HOH A 460 HOH A 475 HOH A 545 HOH A 558 SITE 7 AC1 27 HOH A 561 HOH A 567 HOH A 591 SITE 1 AC2 5 GLY A 148 GLU A 149 HOH A 513 HOH A 575 SITE 2 AC2 5 HOH A 612 SITE 1 AC3 2 ALA A 225 LYS A 226 SITE 1 AC4 4 GLY A 148 KB1 A 301 HOH A 612 HOH A 654 SITE 1 AC5 6 ARG A 37 ARG A 41 ARG A 57 ARG A 84 SITE 2 AC5 6 HOH A 402 HOH A 517 SITE 1 AC6 6 LEU A 71 GLN A 72 ALA A 178 SER A 223 SITE 2 AC6 6 GLY A 224 HOH A 452 SITE 1 AC7 5 LEU A 162 SER A 166 ARG A 197 HOH A 417 SITE 2 AC7 5 HOH A 478 SITE 1 AC8 6 SER A 56 GLY A 58 LYS A 61 KB1 A 301 SITE 2 AC8 6 HOH A 465 HOH A 542 SITE 1 AC9 5 GLY A 107 HIS A 110 GLU A 112 HOH A 599 SITE 2 AC9 5 HOH A 610 SITE 1 AD1 25 SER B 56 GLY B 58 GLY B 81 CYS B 82 SITE 2 AD1 25 GLY B 83 GLY B 86 TRP B 87 THR B 104 SITE 3 AD1 25 LYS B 105 VAL B 130 ASP B 131 VAL B 132 SITE 4 AD1 25 PHE B 133 ASP B 146 GLY B 148 LYS B 182 SITE 5 AD1 25 NA B 308 HOH B 446 HOH B 450 HOH B 471 SITE 6 AD1 25 HOH B 478 HOH B 561 HOH B 566 HOH B 584 SITE 7 AD1 25 HOH B 587 SITE 1 AD2 4 GLY B 148 GLU B 149 HOH B 601 HOH B 628 SITE 1 AD3 3 MET B 114 LEU B 115 HOH B 462 SITE 1 AD4 3 SER B 166 HOH B 401 HOH B 531 SITE 1 AD5 5 LEU B 71 GLN B 72 ALA B 178 SER B 223 SITE 2 AD5 5 GLY B 224 SITE 1 AD6 6 ARG B 37 ARG B 41 VAL B 55 SER B 56 SITE 2 AD6 6 ARG B 84 HOH B 553 SITE 1 AD7 4 GLU B 67 GLU B 254 GLU B 255 HOH B 432 SITE 1 AD8 4 GLY B 148 KB1 B 301 HOH B 628 HOH B 691 CRYST1 38.989 111.231 77.400 90.00 93.87 90.00 P 1 21 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.025648 0.000000 0.001737 0.00000 SCALE2 0.000000 0.008990 0.000000 0.00000 SCALE3 0.000000 0.000000 0.012949 0.00000