HEADER TRANSCRIPTION 29-JAN-17 5UMR TITLE CRYSTAL STRUCTURE OF N-TERMINAL DOMAIN OF HUMAN FACT COMPLEX SUBUNIT TITLE 2 SSRP1 COMPND MOL_ID: 1; COMPND 2 MOLECULE: FACT COMPLEX SUBUNIT SSRP1; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: CHROMATIN-SPECIFIC TRANSCRIPTION ELONGATION FACTOR 80 KDA COMPND 5 SUBUNIT,FACILITATES CHROMATIN TRANSCRIPTION COMPLEX 80 KDA SUBUNIT, COMPND 6 FACTP80,FACILITATES CHROMATIN TRANSCRIPTION COMPLEX SUBUNIT SSRP1, COMPND 7 RECOMBINATION SIGNAL SEQUENCE RECOGNITION PROTEIN 1,STRUCTURE- COMPND 8 SPECIFIC RECOGNITION PROTEIN 1,HSSRP1,T160; COMPND 9 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: SSRP1, FACT80; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PTEV KEYWDS HISTONE CHAPERONE; PH DOMAIN; TRANSCRIPTION; HUMAN FACT COMPLEX, KEYWDS 2 TRANSCRIPTION EXPDTA X-RAY DIFFRACTION AUTHOR D.SU,Q.HU,J.R.THOMPSON,A.HEROUX,M.V.BOTUYAN,G.MER REVDAT 3 23-OCT-24 5UMR 1 REMARK REVDAT 2 04-DEC-19 5UMR 1 REMARK REVDAT 1 31-JAN-18 5UMR 0 JRNL AUTH Q.HU,D.SU,J.R.THOMPSON,M.V.BOTUYAN,G.MER JRNL TITL CRYSTAL STRUCTURE OF N-TERMINAL DOMAIN OF HUMAN FACT COMPLEX JRNL TITL 2 SUBUNIT SSRP1 JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.50 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX DEV_972 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.50 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 37.96 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.390 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.0 REMARK 3 NUMBER OF REFLECTIONS : 15106 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.155 REMARK 3 R VALUE (WORKING SET) : 0.153 REMARK 3 FREE R VALUE : 0.188 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.030 REMARK 3 FREE R VALUE TEST SET COUNT : 760 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 37.9701 - 2.5672 1.00 2937 138 0.1691 0.1900 REMARK 3 2 2.5672 - 2.0377 1.00 2896 160 0.1222 0.1803 REMARK 3 3 2.0377 - 1.7801 1.00 2903 136 0.1166 0.1598 REMARK 3 4 1.7801 - 1.6173 1.00 2849 184 0.1582 0.2131 REMARK 3 5 1.6173 - 1.5014 0.96 2761 142 0.2000 0.2387 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.00 REMARK 3 SHRINKAGE RADIUS : 0.70 REMARK 3 K_SOL : 0.40 REMARK 3 B_SOL : 47.70 REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.220 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 15.230 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.56360 REMARK 3 B22 (A**2) : 0.56360 REMARK 3 B33 (A**2) : -1.12710 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.007 896 REMARK 3 ANGLE : 0.897 1208 REMARK 3 CHIRALITY : 0.085 125 REMARK 3 PLANARITY : 0.004 159 REMARK 3 DIHEDRAL : 13.445 356 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5UMR COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 30-JAN-17. REMARK 100 THE DEPOSITION ID IS D_1000226133. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 01-OCT-10 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : NSLS REMARK 200 BEAMLINE : X25 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9790 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS3 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 15111 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.500 REMARK 200 RESOLUTION RANGE LOW (A) : 38.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.0 REMARK 200 DATA REDUNDANCY : 12.00 REMARK 200 R MERGE (I) : 0.05300 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 77.6000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.50 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.62 REMARK 200 COMPLETENESS FOR SHELL (%) : 87.5 REMARK 200 DATA REDUNDANCY IN SHELL : 7.70 REMARK 200 R MERGE FOR SHELL (I) : 0.45000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 3.000 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 39.03 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.02 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 2.2 M DL-MALIC ACID, 100 MM BIS-TRIS REMARK 280 PROPANE, PH 7.0., VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 288K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 43 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y,X,Z+3/4 REMARK 290 4555 Y,-X,Z+1/4 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 33.64400 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 50.46600 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 16.82200 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A -1 REMARK 465 HIS A 0 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 266 O HOH A 279 1.56 REMARK 500 O HOH A 249 O HOH A 280 1.82 REMARK 500 O HOH A 205 O HOH A 246 2.08 REMARK 500 O HOH A 201 O HOH A 263 2.09 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 5UMS RELATED DB: PDB REMARK 900 RELATED ID: 5UMT RELATED DB: PDB REMARK 900 RELATED ID: 5UMU RELATED DB: PDB DBREF 5UMR A 1 100 UNP Q08945 SSRP1_HUMAN 1 100 SEQADV 5UMR GLY A -1 UNP Q08945 EXPRESSION TAG SEQADV 5UMR HIS A 0 UNP Q08945 EXPRESSION TAG SEQRES 1 A 102 GLY HIS MSE ALA GLU THR LEU GLU PHE ASN ASP VAL TYR SEQRES 2 A 102 GLN GLU VAL LYS GLY SER MSE ASN ASP GLY ARG LEU ARG SEQRES 3 A 102 LEU SER ARG GLN GLY ILE ILE PHE LYS ASN SER LYS THR SEQRES 4 A 102 GLY LYS VAL ASP ASN ILE GLN ALA GLY GLU LEU THR GLU SEQRES 5 A 102 GLY ILE TRP ARG ARG VAL ALA LEU GLY HIS GLY LEU LYS SEQRES 6 A 102 LEU LEU THR LYS ASN GLY HIS VAL TYR LYS TYR ASP GLY SEQRES 7 A 102 PHE ARG GLU SER GLU PHE GLU LYS LEU SER ASP PHE PHE SEQRES 8 A 102 LYS THR HIS TYR ARG LEU GLU LEU MSE GLU LYS MODRES 5UMR MSE A 1 MET MODIFIED RESIDUE MODRES 5UMR MSE A 18 MET MODIFIED RESIDUE MODRES 5UMR MSE A 98 MET MODIFIED RESIDUE HET MSE A 1 17 HET MSE A 18 31 HET MSE A 98 17 HETNAM MSE SELENOMETHIONINE FORMUL 1 MSE 3(C5 H11 N O2 SE) FORMUL 2 HOH *98(H2 O) HELIX 1 AA1 ARG A 78 SER A 80 5 3 HELIX 2 AA2 GLU A 81 TYR A 93 1 13 SHEET 1 AA1 8 VAL A 40 GLN A 44 0 SHEET 2 AA1 8 GLY A 29 ASN A 34 -1 N ILE A 30 O ILE A 43 SHEET 3 AA1 8 SER A 17 SER A 26 -1 N ARG A 24 O ILE A 31 SHEET 4 AA1 8 THR A 4 VAL A 14 -1 N LEU A 5 O LEU A 25 SHEET 5 AA1 8 VAL A 71 PHE A 77 -1 O ASP A 75 N TYR A 11 SHEET 6 AA1 8 HIS A 60 THR A 66 -1 N LEU A 64 O TYR A 72 SHEET 7 AA1 8 LEU A 48 ARG A 55 -1 N THR A 49 O LEU A 65 SHEET 8 AA1 8 MSE A 98 GLU A 99 1 O MSE A 98 N TRP A 53 LINK C MSE A 1 N ALA A 2 1555 1555 1.33 LINK C SER A 17 N MSE A 18 1555 1555 1.33 LINK C MSE A 18 N ASN A 19 1555 1555 1.33 LINK C LEU A 97 N MSE A 98 1555 1555 1.32 LINK C MSE A 98 N GLU A 99 1555 1555 1.33 CRYST1 37.958 37.958 67.288 90.00 90.00 90.00 P 43 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.026345 0.000000 0.000000 0.00000 SCALE2 0.000000 0.026345 0.000000 0.00000 SCALE3 0.000000 0.000000 0.014861 0.00000 HETATM 1 N MSE A 1 42.478 27.053 42.547 1.00 56.88 N ANISOU 1 N MSE A 1 7658 7240 6714 -181 -717 127 N HETATM 2 CA MSE A 1 42.499 26.795 41.080 1.00 57.95 C ANISOU 2 CA MSE A 1 7833 7396 6789 -59 -597 106 C HETATM 3 C MSE A 1 41.623 27.791 40.329 1.00 54.47 C ANISOU 3 C MSE A 1 7179 7387 6130 -69 -897 373 C HETATM 4 O MSE A 1 40.703 28.378 40.899 1.00 53.19 O ANISOU 4 O MSE A 1 6847 7572 5791 233 -1522 589 O HETATM 5 CB MSE A 1 42.013 25.379 40.784 1.00 64.14 C ANISOU 5 CB MSE A 1 8960 8009 7400 57 -173 -214 C HETATM 6 CG MSE A 1 43.100 24.435 40.312 1.00 71.52 C ANISOU 6 CG MSE A 1 10179 8994 8003 199 249 -540 C HETATM 7 SE MSE A 1 42.348 22.926 39.325 1.00 77.09 SE ANISOU 7 SE MSE A 1 10919 9875 8499 438 573 -751 SE HETATM 8 CE MSE A 1 41.441 23.911 37.895 1.00 77.45 C ANISOU 8 CE MSE A 1 10857 9898 8671 237 719 -830 C HETATM 9 H MSE A 1 42.536 26.220 43.020 1.00 68.26 H HETATM 10 HA MSE A 1 43.421 26.872 40.756 1.00 69.54 H HETATM 11 HB2 MSE A 1 41.629 25.006 41.593 1.00 76.96 H HETATM 12 HB3 MSE A 1 41.337 25.421 40.089 1.00 76.96 H HETATM 13 HG2 MSE A 1 43.707 24.912 39.724 1.00 85.83 H HETATM 14 HG3 MSE A 1 43.580 24.088 41.080 1.00 85.83 H HETATM 15 HE1 MSE A 1 41.010 23.284 37.309 1.00 92.93 H HETATM 16 HE2 MSE A 1 40.789 24.497 38.285 1.00 92.93 H HETATM 17 HE3 MSE A 1 42.092 24.422 37.407 1.00 92.93 H