HEADER CELL ADHESION 30-JAN-17 5UN2 TITLE CRYSTAL STRUCTURE OF MOUSE CADHERIN-23 EC19-21 WITH NON-SYNDROMIC TITLE 2 DEAFNESS (DFNB12) ASSOCIATED MUTATION R2029W COMPND MOL_ID: 1; COMPND 2 MOLECULE: CADHERIN-23; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: RESIDUES 1955-2289; COMPND 5 SYNONYM: OTOCADHERIN; COMPND 6 ENGINEERED: YES; COMPND 7 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MUS MUSCULUS; SOURCE 3 ORGANISM_COMMON: MOUSE; SOURCE 4 ORGANISM_TAXID: 10090; SOURCE 5 GENE: CDH23; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 511693; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21-RIPL; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET-21A+ KEYWDS HEARING, MECHANOTRANSDUCTION, ADHESION, CALCIUM-BINDING PROTEIN, CELL KEYWDS 2 ADHESION EXPDTA X-RAY DIFFRACTION AUTHOR A.JAIGANESH,M.SOTOMAYOR REVDAT 7 04-OCT-23 5UN2 1 REMARK REVDAT 6 16-MAR-22 5UN2 1 LINK REVDAT 5 19-SEP-18 5UN2 1 JRNL REVDAT 4 01-AUG-18 5UN2 1 JRNL REVDAT 3 21-MAR-18 5UN2 1 SOURCE REVDAT 2 07-MAR-18 5UN2 1 REMARK REVDAT 1 07-FEB-18 5UN2 0 JRNL AUTH A.JAIGANESH,P.DE-LA-TORRE,A.A.PATEL,D.J.TERMINE, JRNL AUTH 2 F.VELEZ-CORTES,C.CHEN,M.SOTOMAYOR JRNL TITL ZOOMING IN ON CADHERIN-23: STRUCTURAL DIVERSITY AND JRNL TITL 2 POTENTIAL MECHANISMS OF INHERITED DEAFNESS. JRNL REF STRUCTURE V. 26 1210 2018 JRNL REFN ISSN 1878-4186 JRNL PMID 30033219 JRNL DOI 10.1016/J.STR.2018.06.003 REMARK 2 REMARK 2 RESOLUTION. 2.96 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0158 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.96 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 50.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 91.4 REMARK 3 NUMBER OF REFLECTIONS : 12402 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.198 REMARK 3 R VALUE (WORKING SET) : 0.196 REMARK 3 FREE R VALUE : 0.236 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 668 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.96 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 3.04 REMARK 3 REFLECTION IN BIN (WORKING SET) : 933 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 94.69 REMARK 3 BIN R VALUE (WORKING SET) : 0.3560 REMARK 3 BIN FREE R VALUE SET COUNT : 48 REMARK 3 BIN FREE R VALUE : 0.3480 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2563 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 10 REMARK 3 SOLVENT ATOMS : 59 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 36.30 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 48.33 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.72000 REMARK 3 B22 (A**2) : 5.61000 REMARK 3 B33 (A**2) : -6.65000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 2.12000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.729 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.338 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.227 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 26.728 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.927 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.905 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2621 ; 0.010 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 2407 ; 0.002 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 3600 ; 1.440 ; 1.967 REMARK 3 BOND ANGLES OTHERS (DEGREES): 5596 ; 0.927 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 336 ; 7.152 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 118 ;35.780 ;25.847 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 407 ;14.839 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 11 ;18.701 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 446 ; 0.076 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2925 ; 0.005 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 466 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1341 ; 0.534 ; 2.623 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 1340 ; 0.534 ; 2.622 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 1675 ; 0.952 ; 3.932 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 1676 ; 0.952 ; 3.933 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1279 ; 0.440 ; 2.674 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 1277 ; 0.437 ; 2.672 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 1924 ; 0.802 ; 3.993 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): 2666 ; 2.445 ;30.848 REMARK 3 LONG RANGE B OTHER ATOMS (A**2): 2662 ; 2.375 ;30.829 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 3 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 3 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 1931 A 2040 REMARK 3 RESIDUE RANGE : A 2301 A 2302 REMARK 3 RESIDUE RANGE : A 2309 A 2310 REMARK 3 ORIGIN FOR THE GROUP (A): -66.6180 -31.0390 35.9620 REMARK 3 T TENSOR REMARK 3 T11: 0.0893 T22: 0.2352 REMARK 3 T33: 0.2115 T12: -0.0727 REMARK 3 T13: -0.0920 T23: 0.0225 REMARK 3 L TENSOR REMARK 3 L11: 5.7196 L22: 2.3404 REMARK 3 L33: 8.2993 L12: 1.2079 REMARK 3 L13: -5.5186 L23: -1.6278 REMARK 3 S TENSOR REMARK 3 S11: 0.1822 S12: -0.0235 S13: -0.0072 REMARK 3 S21: -0.0654 S22: -0.0937 S23: -0.1343 REMARK 3 S31: -0.3813 S32: 0.5994 S33: -0.0885 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 2 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 2041 A 2145 REMARK 3 RESIDUE RANGE : A 2303 A 2305 REMARK 3 ORIGIN FOR THE GROUP (A): -38.9400 -13.8750 -0.9660 REMARK 3 T TENSOR REMARK 3 T11: 0.2000 T22: 0.3591 REMARK 3 T33: 0.2994 T12: -0.1515 REMARK 3 T13: -0.0400 T23: 0.0274 REMARK 3 L TENSOR REMARK 3 L11: 5.0329 L22: 1.4184 REMARK 3 L33: 6.2025 L12: 1.9242 REMARK 3 L13: -5.4843 L23: -2.2567 REMARK 3 S TENSOR REMARK 3 S11: -0.0775 S12: 0.1331 S13: -0.0377 REMARK 3 S21: 0.2204 S22: 0.0736 S23: 0.1653 REMARK 3 S31: 0.1330 S32: -0.4080 S33: 0.0038 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 2 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 2146 A 2265 REMARK 3 RESIDUE RANGE : A 2306 A 2308 REMARK 3 ORIGIN FOR THE GROUP (A): -2.9020 -1.1400 -32.6340 REMARK 3 T TENSOR REMARK 3 T11: 0.0279 T22: 0.0334 REMARK 3 T33: 0.0906 T12: 0.0143 REMARK 3 T13: -0.0471 T23: -0.0124 REMARK 3 L TENSOR REMARK 3 L11: 7.9116 L22: 1.7386 REMARK 3 L33: 4.9486 L12: 1.9750 REMARK 3 L13: -4.3526 L23: -1.6476 REMARK 3 S TENSOR REMARK 3 S11: 0.0868 S12: 0.2903 S13: -0.1821 REMARK 3 S21: -0.0354 S22: -0.0511 S23: 0.0109 REMARK 3 S31: -0.0439 S32: -0.2551 S33: -0.0357 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 5UN2 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 31-JAN-17. REMARK 100 THE DEPOSITION ID IS D_1000226098. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 18-JAN-17 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.1-7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : RIGAKU MICROMAX-003 REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.542 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 200K REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-3000 REMARK 200 DATA SCALING SOFTWARE : HKL-3000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 14294 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.960 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 91.5 REMARK 200 DATA REDUNDANCY : 3.800 REMARK 200 R MERGE (I) : 0.16400 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 7.8630 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.96 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 3.01 REMARK 200 COMPLETENESS FOR SHELL (%) : 95.3 REMARK 200 DATA REDUNDANCY IN SHELL : 3.60 REMARK 200 R MERGE FOR SHELL (I) : 0.55400 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.970 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 5TFK REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 73.00 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 4.64 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M HEPES PH 7.3 0.1 M CACL2 27% PEG REMARK 280 400 5% GLYCEROL, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 94.73750 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 36.95400 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 94.73750 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 36.95400 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: MONOMER AS DETERMINED BY SIZE EXCLUSION CHROMATOGRAPHY REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A2459 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ASN A 2266 REMARK 465 LEU A 2267 REMARK 465 GLU A 2268 REMARK 465 HIS A 2269 REMARK 465 HIS A 2270 REMARK 465 HIS A 2271 REMARK 465 HIS A 2272 REMARK 465 HIS A 2273 REMARK 465 HIS A 2274 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LEU A2066 145.22 -172.21 REMARK 500 ARG A2084 133.35 -177.14 REMARK 500 GLN A2114 117.29 -163.37 REMARK 500 GLN A2156 119.32 -163.04 REMARK 500 ALA A2171 161.79 179.31 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A2301 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A1947 OE2 REMARK 620 2 ASP A2005 OD1 97.3 REMARK 620 3 GLU A2007 OE1 93.0 78.6 REMARK 620 4 ASP A2041 OD2 75.4 172.6 100.6 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A2302 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A1947 OE1 REMARK 620 2 GLU A2007 OE2 101.4 REMARK 620 3 ASP A2038 OD1 81.8 93.9 REMARK 620 4 ASP A2039 O 82.6 175.8 85.6 REMARK 620 5 ASP A2041 OD1 88.4 105.3 159.9 75.7 REMARK 620 6 ASP A2074 OD1 164.3 92.4 104.8 83.7 80.7 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 K A2309 K REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A1966 OD1 REMARK 620 2 ASP A1966 OD2 42.7 REMARK 620 3 ASP A1968 O 93.9 55.2 REMARK 620 4 VAL A1971 O 104.3 74.3 69.6 REMARK 620 5 HOH A2401 O 66.7 76.2 74.7 142.5 REMARK 620 6 HOH A2422 O 144.8 172.4 118.6 99.8 107.2 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A2308 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A1969 OE2 REMARK 620 2 ASP A1970 OD1 84.3 REMARK 620 3 ASP A1970 OD2 99.5 46.1 REMARK 620 4 GLU A2162 OE2 16.4 70.6 83.4 REMARK 620 5 ASN A2224 OD1 15.3 71.7 84.4 1.1 REMARK 620 6 GLU A2226 OE2 15.9 70.7 84.0 0.7 1.0 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A2307 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A1970 OD1 REMARK 620 2 GLU A2162 OE1 84.8 REMARK 620 3 GLU A2226 OE1 85.6 1.3 REMARK 620 4 GLU A2226 OE2 84.8 1.1 0.8 REMARK 620 5 ASP A2262 OD1 85.8 1.1 1.1 1.6 REMARK 620 6 VAL A2263 O 85.0 0.9 1.9 2.0 1.1 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 K A2310 K REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A2022 OD1 REMARK 620 2 ILE A2023 O 70.1 REMARK 620 N 1 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A2303 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASN A2040 OD1 REMARK 620 2 ASN A2042 O 111.9 REMARK 620 3 ASP A2072 OD1 142.8 75.3 REMARK 620 4 ASP A2072 OD2 155.6 92.5 42.6 REMARK 620 5 ASP A2074 OD2 76.6 77.4 69.3 111.0 REMARK 620 6 ASN A2078 O 89.0 152.0 76.8 68.4 90.2 REMARK 620 7 ASP A2125 OD2 78.3 100.3 138.0 97.2 151.7 102.2 REMARK 620 N 1 2 3 4 5 6 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A2304 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A2057 OE2 REMARK 620 2 ASP A2110 OD1 89.1 REMARK 620 3 GLU A2112 OE1 80.0 80.6 REMARK 620 4 ASP A2146 OD1 87.7 152.8 72.3 REMARK 620 5 ASP A2146 OD2 71.1 152.5 113.2 48.4 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A2305 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A2057 OE1 REMARK 620 2 GLU A2112 OE1 89.3 REMARK 620 3 GLU A2112 OE2 107.3 52.0 REMARK 620 4 ASP A2143 OD1 86.0 126.2 78.7 REMARK 620 5 ILE A2144 O 79.2 150.4 157.6 80.5 REMARK 620 6 ASP A2146 OD1 95.2 73.3 119.2 160.5 80.6 REMARK 620 7 ASP A2179 OD1 175.1 94.4 77.5 94.3 96.0 82.9 REMARK 620 N 1 2 3 4 5 6 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A2306 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASN A2145 OD1 REMARK 620 2 SER A2147 O 138.5 REMARK 620 3 ASP A2177 OD1 90.3 78.8 REMARK 620 4 ASP A2177 OD2 129.2 71.8 50.3 REMARK 620 5 ASP A2179 OD2 67.0 72.7 61.5 106.9 REMARK 620 6 ASP A2239 OD2 65.8 138.6 66.3 68.9 106.8 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CA A 2301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CA A 2302 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CA A 2303 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CA A 2304 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CA A 2305 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CA A 2306 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CA A 2307 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CA A 2308 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue K A 2309 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue K A 2310 DBREF 5UN2 A 1932 2266 UNP Q99PF4 CAD23_MOUSE 1955 2289 SEQADV 5UN2 MET A 1931 UNP Q99PF4 INITIATING METHIONINE SEQADV 5UN2 TRP A 2006 UNP Q99PF4 ARG 2029 ENGINEERED MUTATION SEQADV 5UN2 LEU A 2267 UNP Q99PF4 EXPRESSION TAG SEQADV 5UN2 GLU A 2268 UNP Q99PF4 EXPRESSION TAG SEQADV 5UN2 HIS A 2269 UNP Q99PF4 EXPRESSION TAG SEQADV 5UN2 HIS A 2270 UNP Q99PF4 EXPRESSION TAG SEQADV 5UN2 HIS A 2271 UNP Q99PF4 EXPRESSION TAG SEQADV 5UN2 HIS A 2272 UNP Q99PF4 EXPRESSION TAG SEQADV 5UN2 HIS A 2273 UNP Q99PF4 EXPRESSION TAG SEQADV 5UN2 HIS A 2274 UNP Q99PF4 EXPRESSION TAG SEQRES 1 A 344 MET ASN HIS PRO LEU PHE THR GLU GLY THR TYR GLN ALA SEQRES 2 A 344 GLU VAL MET GLU ASN SER PRO ALA GLY THR PRO LEU THR SEQRES 3 A 344 VAL LEU ASN GLY PRO ILE LEU ALA LEU ASP ALA ASP GLU SEQRES 4 A 344 ASP VAL TYR ALA VAL VAL THR TYR GLN LEU LEU GLY THR SEQRES 5 A 344 HIS SER ASP LEU PHE VAL ILE ASP ASN SER THR GLY VAL SEQRES 6 A 344 VAL THR VAL ARG SER GLY ILE ILE ILE ASP TRP GLU ALA SEQRES 7 A 344 PHE SER PRO PRO PHE LEU GLU LEU LEU LEU LEU ALA GLU SEQRES 8 A 344 ASP ILE GLY GLN LEU ASN GLY THR ALA HIS LEU PHE ILE SEQRES 9 A 344 THR ILE LEU ASP ASP ASN ASP ASN TRP PRO THR PHE SER SEQRES 10 A 344 PRO PRO THR TYR THR VAL HIS LEU LEU GLU ASN CYS PRO SEQRES 11 A 344 PRO GLY PHE SER VAL LEU GLN VAL THR ALA THR ASP GLU SEQRES 12 A 344 ASP SER GLY LEU ASN GLY GLU LEU VAL TYR ARG ILE GLU SEQRES 13 A 344 ALA GLY ALA GLN ASP ARG PHE LEU ILE HIS PRO VAL THR SEQRES 14 A 344 GLY VAL ILE ARG VAL GLY ASN ALA THR ILE ASP ARG GLU SEQRES 15 A 344 GLU GLN GLU SER TYR ARG LEU THR VAL VAL ALA THR ASP SEQRES 16 A 344 ARG GLY THR VAL PRO LEU SER GLY THR ALA ILE VAL THR SEQRES 17 A 344 ILE LEU ILE ASP ASP ILE ASN ASP SER ARG PRO GLU PHE SEQRES 18 A 344 LEU ASN PRO ILE GLN THR VAL SER VAL LEU GLU SER ALA SEQRES 19 A 344 GLU PRO GLY THR ILE ILE ALA ASN VAL THR ALA ILE ASP SEQRES 20 A 344 LEU ASP LEU ASN PRO LYS LEU GLU TYR HIS ILE ILE SER SEQRES 21 A 344 ILE VAL ALA LYS ASP ASP THR ASP ARG LEU VAL PRO ASP SEQRES 22 A 344 GLN GLU ASP ALA PHE ALA VAL ASN ILE ASN THR GLY SER SEQRES 23 A 344 VAL MET VAL LYS SER PRO LEU ASN ARG GLU LEU VAL ALA SEQRES 24 A 344 THR TYR GLU VAL THR LEU SER VAL ILE ASP ASN ALA SER SEQRES 25 A 344 ASP LEU PRO GLU HIS SER VAL SER VAL PRO ASN ALA LYS SEQRES 26 A 344 LEU THR VAL ASN ILE LEU ASP VAL ASN ASP ASN LEU GLU SEQRES 27 A 344 HIS HIS HIS HIS HIS HIS HET CA A2301 1 HET CA A2302 1 HET CA A2303 1 HET CA A2304 1 HET CA A2305 1 HET CA A2306 1 HET CA A2307 1 HET CA A2308 1 HET K A2309 1 HET K A2310 1 HETNAM CA CALCIUM ION HETNAM K POTASSIUM ION FORMUL 2 CA 8(CA 2+) FORMUL 10 K 2(K 1+) FORMUL 12 HOH *59(H2 O) HELIX 1 AA1 HIS A 1983 ASP A 1985 5 3 HELIX 2 AA2 ASP A 2005 PHE A 2009 5 5 HELIX 3 AA3 SER A 2075 GLY A 2079 5 5 HELIX 4 AA4 GLN A 2204 ASP A 2206 5 3 HELIX 5 AA5 LEU A 2244 SER A 2248 5 5 SHEET 1 AA1 2 LEU A1935 PHE A1936 0 SHEET 2 AA1 2 ALA A1964 LEU A1965 -1 O LEU A1965 N LEU A1935 SHEET 1 AA2 4 THR A1940 MET A1946 0 SHEET 2 AA2 4 GLY A2028 LEU A2037 1 O HIS A2031 N TYR A1941 SHEET 3 AA2 4 PHE A2013 GLU A2021 -1 N LEU A2014 O ILE A2034 SHEET 4 AA2 4 THR A1976 LEU A1980 -1 N LEU A1980 O LEU A2017 SHEET 1 AA3 2 PHE A1987 ILE A1989 0 SHEET 2 AA3 2 VAL A1996 VAL A1998 -1 O THR A1997 N VAL A1988 SHEET 1 AA4 2 THR A2045 PHE A2046 0 SHEET 2 AA4 2 ALA A2070 THR A2071 -1 O THR A2071 N THR A2045 SHEET 1 AA5 4 THR A2050 LEU A2056 0 SHEET 2 AA5 4 SER A2132 ASP A2142 1 O ASP A2142 N LEU A2055 SHEET 3 AA5 4 SER A2116 ASP A2125 -1 N LEU A2119 O VAL A2137 SHEET 4 AA5 4 LEU A2081 ALA A2087 -1 N GLU A2086 O THR A2120 SHEET 1 AA6 3 SER A2064 GLN A2067 0 SHEET 2 AA6 3 VAL A2101 VAL A2104 -1 O ILE A2102 N LEU A2066 SHEET 3 AA6 3 PHE A2093 ILE A2095 -1 N LEU A2094 O ARG A2103 SHEET 1 AA7 2 GLU A2150 PHE A2151 0 SHEET 2 AA7 2 ALA A2175 ILE A2176 -1 O ILE A2176 N GLU A2150 SHEET 1 AA8 5 ILE A2155 LEU A2161 0 SHEET 2 AA8 5 ALA A2254 LEU A2261 1 O LEU A2261 N VAL A2160 SHEET 3 AA8 5 THR A2230 ASP A2239 -1 N LEU A2235 O ALA A2254 SHEET 4 AA8 5 LEU A2184 ASP A2195 -1 N VAL A2192 O GLU A2232 SHEET 5 AA8 5 ARG A2199 LEU A2200 -1 O ARG A2199 N ASP A2195 SHEET 1 AA9 3 ILE A2169 ASN A2172 0 SHEET 2 AA9 3 SER A2216 VAL A2219 -1 O VAL A2217 N ALA A2171 SHEET 3 AA9 3 PHE A2208 VAL A2210 -1 N ALA A2209 O MET A2218 LINK OE2 GLU A1947 CA CA A2301 1555 1555 2.36 LINK OE1 GLU A1947 CA CA A2302 1555 1555 2.39 LINK OD1 ASP A1966 K K A2309 1555 1555 2.51 LINK OD2 ASP A1966 K K A2309 1555 1555 3.13 LINK O ASP A1968 K K A2309 1555 1555 2.67 LINK OE2 GLU A1969 CA CA A2308 1555 3447 2.14 LINK OD1 ASP A1970 CA CA A2307 1555 3447 2.31 LINK OD1 ASP A1970 CA CA A2308 1555 3447 2.89 LINK OD2 ASP A1970 CA CA A2308 1555 3447 2.63 LINK O VAL A1971 K K A2309 1555 1555 2.85 LINK OD1 ASP A2005 CA CA A2301 1555 1555 2.91 LINK OE1 GLU A2007 CA CA A2301 1555 1555 2.45 LINK OE2 GLU A2007 CA CA A2302 1555 1555 2.28 LINK OD1 ASP A2022 K K A2310 1555 1555 2.58 LINK O ILE A2023 K K A2310 1555 1555 2.64 LINK OD1 ASP A2038 CA CA A2302 1555 1555 2.34 LINK O ASP A2039 CA CA A2302 1555 1555 2.38 LINK OD1 ASN A2040 CA CA A2303 1555 1555 2.41 LINK OD2 ASP A2041 CA CA A2301 1555 1555 2.53 LINK OD1 ASP A2041 CA CA A2302 1555 1555 2.38 LINK O ASN A2042 CA CA A2303 1555 1555 2.46 LINK OE2 GLU A2057 CA CA A2304 1555 1555 2.36 LINK OE1 GLU A2057 CA CA A2305 1555 1555 2.36 LINK OD1 ASP A2072 CA CA A2303 1555 1555 3.14 LINK OD2 ASP A2072 CA CA A2303 1555 1555 2.79 LINK OD1 ASP A2074 CA CA A2302 1555 1555 2.40 LINK OD2 ASP A2074 CA CA A2303 1555 1555 2.47 LINK O ASN A2078 CA CA A2303 1555 1555 2.51 LINK OD1 ASP A2110 CA CA A2304 1555 1555 2.30 LINK OE1 GLU A2112 CA CA A2304 1555 1555 2.48 LINK OE1 GLU A2112 CA CA A2305 1555 1555 2.54 LINK OE2 GLU A2112 CA CA A2305 1555 1555 2.43 LINK OD2 ASP A2125 CA CA A2303 1555 1555 2.81 LINK OD1 ASP A2143 CA CA A2305 1555 1555 2.63 LINK O ILE A2144 CA CA A2305 1555 1555 2.24 LINK OD1 ASN A2145 CA CA A2306 1555 1555 2.42 LINK OD1 ASP A2146 CA CA A2304 1555 1555 2.68 LINK OD2 ASP A2146 CA CA A2304 1555 1555 2.68 LINK OD1 ASP A2146 CA CA A2305 1555 1555 2.57 LINK O SER A2147 CA CA A2306 1555 1555 2.40 LINK OE1 GLU A2162 CA CA A2307 1555 1555 2.43 LINK OE2 GLU A2162 CA CA A2308 1555 1555 2.39 LINK OD1 ASP A2177 CA CA A2306 1555 1555 2.66 LINK OD2 ASP A2177 CA CA A2306 1555 1555 2.43 LINK OD1 ASP A2179 CA CA A2305 1555 1555 2.35 LINK OD2 ASP A2179 CA CA A2306 1555 1555 2.48 LINK OD1 ASN A2224 CA CA A2308 1555 1555 2.18 LINK OE1 GLU A2226 CA CA A2307 1555 1555 2.78 LINK OE2 GLU A2226 CA CA A2307 1555 1555 2.79 LINK OE2 GLU A2226 CA CA A2308 1555 1555 2.67 LINK OD2 ASP A2239 CA CA A2306 1555 1555 2.73 LINK OD1 ASP A2262 CA CA A2307 1555 1555 2.38 LINK O VAL A2263 CA CA A2307 1555 1555 2.45 LINK K K A2309 O HOH A2401 1555 1555 2.49 LINK K K A2309 O HOH A2422 1555 3447 2.74 CISPEP 1 SER A 2010 PRO A 2011 0 -7.69 CISPEP 2 SER A 2047 PRO A 2048 0 8.24 CISPEP 3 VAL A 2251 PRO A 2252 0 -1.52 SITE 1 AC1 4 GLU A1947 ASP A2005 GLU A2007 ASP A2041 SITE 1 AC2 6 GLU A1947 GLU A2007 ASP A2038 ASP A2039 SITE 2 AC2 6 ASP A2041 ASP A2074 SITE 1 AC3 6 ASN A2040 ASN A2042 ASP A2072 ASP A2074 SITE 2 AC3 6 ASN A2078 ASP A2125 SITE 1 AC4 4 GLU A2057 ASP A2110 GLU A2112 ASP A2146 SITE 1 AC5 6 GLU A2057 GLU A2112 ASP A2143 ILE A2144 SITE 2 AC5 6 ASP A2146 ASP A2179 SITE 1 AC6 5 ASN A2145 SER A2147 ASP A2177 ASP A2179 SITE 2 AC6 5 ASP A2239 SITE 1 AC7 5 ASP A1970 GLU A2162 GLU A2226 ASP A2262 SITE 2 AC7 5 VAL A2263 SITE 1 AC8 5 GLU A1969 ASP A1970 GLU A2162 ASN A2224 SITE 2 AC8 5 GLU A2226 SITE 1 AC9 5 ASP A1966 ASP A1968 VAL A1971 HOH A2401 SITE 2 AC9 5 HOH A2422 SITE 1 AD1 2 ASP A2022 ILE A2023 CRYST1 189.475 73.908 49.375 90.00 96.62 90.00 C 1 2 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.005278 0.000000 0.000612 0.00000 SCALE2 0.000000 0.013530 0.000000 0.00000 SCALE3 0.000000 0.000000 0.020389 0.00000