HEADER DE NOVO PROTEIN 31-JAN-17 5UOI TITLE SOLUTION STRUCTURE OF THE DE NOVO MINI PROTEIN HHH_RD1_0142 COMPND MOL_ID: 1; COMPND 2 MOLECULE: HHH_RD1_0142; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ESCHERICHIA COLI; SOURCE 3 ORGANISM_TAXID: 562; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS DE NOVO DESIGN, ALL-ALPHA, HELIX-HELIX-HELIX, MINI PROTEIN, DE NOVO KEYWDS 2 PROTEIN EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR S.HOULISTON,G.J.ROCKLIN,A.LEMAK,L.CARTER,T.M.CHIDYAUSIKU,D.BAKER, AUTHOR 2 C.H.ARROWSMITH REVDAT 4 15-MAY-24 5UOI 1 REMARK REVDAT 3 14-JUN-23 5UOI 1 REMARK REVDAT 2 08-JAN-20 5UOI 1 REMARK REVDAT 1 26-JUL-17 5UOI 0 JRNL AUTH G.J.ROCKLIN,T.M.CHIDYAUSIKU,I.GORESHNIK,A.FORD,S.HOULISTON, JRNL AUTH 2 A.LEMAK,L.CARTER,R.RAVICHANDRAN,V.K.MULLIGAN,A.CHEVALIER, JRNL AUTH 3 C.H.ARROWSMITH,D.BAKER JRNL TITL GLOBAL ANALYSIS OF PROTEIN FOLDING USING MASSIVELY PARALLEL JRNL TITL 2 DESIGN, SYNTHESIS, AND TESTING. JRNL REF SCIENCE V. 357 168 2017 JRNL REFN ESSN 1095-9203 JRNL PMID 28706065 JRNL DOI 10.1126/SCIENCE.AAN0693 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS REMARK 3 AUTHORS : BRUNGER, ADAMS, CLORE, GROS, NILGES AND READ REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: SHORT RESTRAINED DYNAMICS SIMLUATION IN REMARK 3 EXPLICIT SOLVENT REMARK 4 REMARK 4 5UOI COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 07-FEB-17. REMARK 100 THE DEPOSITION ID IS D_1000226189. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298 REMARK 210 PH : 7.4 REMARK 210 IONIC STRENGTH : 150 REMARK 210 PRESSURE : 1 PA REMARK 210 SAMPLE CONTENTS : 150 MM UNLABELED SODIUM REMARK 210 CHLORIDE, 400 UM [U-13C; U-15N] REMARK 210 PROTEIN, 50 MM UNLABELED SODIUM REMARK 210 PHOSPHATE, 95% H2O/5% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 3D 15N NOESY; 3D 13C NOESY REMARK 210 (AROMATIC AND ALIPHATIC); 3D REMARK 210 HNCA; 3D HNCO; 3D CBCA(CO)NH; 3D REMARK 210 HBHA(CO)NH REMARK 210 SPECTROMETER FIELD STRENGTH : 600 MHZ; 800 MHZ REMARK 210 SPECTROMETER MODEL : AVANCE III REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : CYANA, ABACUS REMARK 210 METHOD USED : MOLECULAR DYNAMICS REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 100 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : 20 STRUCTURES FOR LOWEST ENERGY REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 0 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 3830 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: 0.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (RES=RESIDUE NAME; REMARK 470 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 470 MODELS 1-20 REMARK 470 RES CSSEQI ATOMS REMARK 470 LEU A 43 O REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 3 ASN A 15 94.75 -61.68 REMARK 500 4 ASN A 15 83.96 -69.94 REMARK 500 5 ASN A 15 92.23 -69.74 REMARK 500 5 LYS A 40 -87.77 67.00 REMARK 500 5 LYS A 41 -82.98 41.10 REMARK 500 5 ARG A 42 95.20 66.65 REMARK 500 6 GLU A 12 79.38 -113.00 REMARK 500 6 GLU A 13 -59.45 -164.06 REMARK 500 8 LYS A 2 54.58 -90.43 REMARK 500 8 TRP A 3 24.23 -78.20 REMARK 500 8 ASN A 15 90.08 -63.61 REMARK 500 10 TRP A 3 37.46 -88.36 REMARK 500 10 GLU A 8 -71.94 -65.63 REMARK 500 11 TRP A 3 45.20 -100.75 REMARK 500 11 ASN A 15 80.65 59.63 REMARK 500 11 ALA A 28 -72.72 -78.70 REMARK 500 13 GLU A 12 -74.80 -80.14 REMARK 500 13 GLU A 33 -71.31 -64.77 REMARK 500 13 LYS A 40 79.04 59.60 REMARK 500 14 LYS A 40 76.04 -152.38 REMARK 500 14 LYS A 41 -77.60 24.53 REMARK 500 15 GLU A 23 -65.20 71.32 REMARK 500 15 VAL A 39 98.30 -56.29 REMARK 500 16 ASN A 15 93.73 -63.40 REMARK 500 16 GLU A 23 -56.04 74.23 REMARK 500 16 VAL A 39 91.88 -68.90 REMARK 500 18 TRP A 3 25.13 -79.24 REMARK 500 18 GLU A 4 -39.69 -146.09 REMARK 500 18 VAL A 39 90.28 -57.01 REMARK 500 19 GLU A 4 -69.07 -90.77 REMARK 500 19 GLU A 23 -41.64 74.32 REMARK 500 20 GLU A 8 -72.93 -78.68 REMARK 500 20 ASN A 15 78.16 61.14 REMARK 500 20 VAL A 39 33.45 -89.48 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 30240 RELATED DB: BMRB REMARK 900 SOLUTION STRUCTURE OF THE DE NOVO MINI PROTEIN HHH_RD1_0142 REMARK 900 RELATED ID: 5UP1 RELATED DB: PDB REMARK 900 RELATED ID: 5UP5 RELATED DB: PDB DBREF 5UOI A 1 43 PDB 5UOI 5UOI 1 43 SEQRES 1 A 43 ARG LYS TRP GLU GLU ILE ALA GLU ARG LEU ARG GLU GLU SEQRES 2 A 43 PHE ASN ILE ASN PRO GLU GLU ALA ARG GLU ALA VAL GLU SEQRES 3 A 43 LYS ALA GLY GLY ASN GLU GLU GLU ALA ARG ARG ILE VAL SEQRES 4 A 43 LYS LYS ARG LEU HELIX 1 AA1 TRP A 3 PHE A 14 1 12 HELIX 2 AA2 ASN A 17 GLY A 29 1 13 HELIX 3 AA3 ASN A 31 VAL A 39 1 9 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1