HEADER HYDROLASE/HYDROLASE INHIBITOR 01-FEB-17 5UP0 TITLE CRYSTAL STRUCTURE OF HUMAN PDE1B CATALYTIC DOMAIN IN COMPLEX WITH TITLE 2 INHIBITOR 3 (6-(4-CHLOROBENZYL)-8,9,10,11-TETRAHYDROBENZO[4, TITLE 3 5]THIENO[3,2-E][1,2,4]TRIAZOLO[1,5-C]PYRIMIDIN-5(6H)-ONE) COMPND MOL_ID: 1; COMPND 2 MOLECULE: CALCIUM/CALMODULIN-DEPENDENT 3',5'-CYCLIC NUCLEOTIDE COMPND 3 PHOSPHODIESTERASE 1B; COMPND 4 CHAIN: A; COMPND 5 SYNONYM: CAM-PDE 1B,63 KDA CAM-PDE; COMPND 6 EC: 3.1.4.17; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: PDE1B, PDE1B1, PDES1B; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS HYDROLASE, HYDROLASE INHIBITOR, HYDROLASE-HYDROLASE INHIBITOR COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR E.P.CEDERVALL,C.K.ALLERSTON,R.XU,V.SRIDHAR,R.BARKER,K.AERTGEERTS REVDAT 3 04-OCT-23 5UP0 1 LINK REVDAT 2 10-MAY-17 5UP0 1 JRNL REVDAT 1 26-APR-17 5UP0 0 JRNL AUTH B.DYCK,B.BRANSTETTER,T.GHARBAOUI,A.R.HUDSON, JRNL AUTH 2 J.G.BREITENBUCHER,L.GOMEZ,I.BOTROUS,T.MARRONE,R.BARIDO, JRNL AUTH 3 C.K.ALLERSTON,E.P.CEDERVALL,R.XU,V.SRIDHAR,R.BARKER, JRNL AUTH 4 K.AERTGEERTS,K.SCHMELZER,D.NEUL,D.LEE,M.E.MASSARI, JRNL AUTH 5 C.B.ANDERSEN,K.SEBRING,X.ZHOU,R.PETROSKI,J.LIMBERIS, JRNL AUTH 6 M.AUGUSTIN,L.E.CHUN,T.E.EDWARDS,M.PETERS,A.TABATABAEI JRNL TITL DISCOVERY OF SELECTIVE PHOSPHODIESTERASE 1 INHIBITORS WITH JRNL TITL 2 MEMORY ENHANCING PROPERTIES. JRNL REF J. MED. CHEM. V. 60 3472 2017 JRNL REFN ISSN 1520-4804 JRNL PMID 28406621 JRNL DOI 10.1021/ACS.JMEDCHEM.7B00302 REMARK 2 REMARK 2 RESOLUTION. 2.04 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.9_1692 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.04 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 61.79 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.330 REMARK 3 COMPLETENESS FOR RANGE (%) : 98.0 REMARK 3 NUMBER OF REFLECTIONS : 33382 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.199 REMARK 3 R VALUE (WORKING SET) : 0.197 REMARK 3 FREE R VALUE : 0.226 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.010 REMARK 3 FREE R VALUE TEST SET COUNT : 1671 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 61.8160 - 4.6698 0.99 2893 158 0.1657 0.1849 REMARK 3 2 4.6698 - 3.7067 0.98 2692 149 0.1508 0.1762 REMARK 3 3 3.7067 - 3.2382 0.98 2647 143 0.1732 0.2117 REMARK 3 4 3.2382 - 2.9421 0.98 2656 133 0.1990 0.2499 REMARK 3 5 2.9421 - 2.7313 0.98 2614 135 0.2044 0.2313 REMARK 3 6 2.7313 - 2.5702 0.98 2626 146 0.2161 0.2343 REMARK 3 7 2.5702 - 2.4415 0.98 2619 124 0.2334 0.2406 REMARK 3 8 2.4415 - 2.3352 0.99 2618 142 0.2350 0.3010 REMARK 3 9 2.3352 - 2.2453 0.97 2555 146 0.2906 0.3666 REMARK 3 10 2.2453 - 2.1678 0.97 2554 136 0.3255 0.3252 REMARK 3 11 2.1678 - 2.1000 0.99 2625 133 0.3336 0.3244 REMARK 3 12 2.1000 - 2.0400 0.98 2612 126 0.3531 0.4064 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.250 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 27.230 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 37.05 REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.008 2683 REMARK 3 ANGLE : 1.061 3638 REMARK 3 CHIRALITY : 0.045 416 REMARK 3 PLANARITY : 0.005 462 REMARK 3 DIHEDRAL : 15.225 960 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 9 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 150 THROUGH 178 ) REMARK 3 ORIGIN FOR THE GROUP (A): -28.6918 0.8789 -28.9846 REMARK 3 T TENSOR REMARK 3 T11: 0.6069 T22: 0.5489 REMARK 3 T33: 0.4620 T12: 0.1369 REMARK 3 T13: -0.0183 T23: 0.1946 REMARK 3 L TENSOR REMARK 3 L11: 0.6892 L22: 2.9322 REMARK 3 L33: 0.7530 L12: -0.7593 REMARK 3 L13: 0.1241 L23: -0.1836 REMARK 3 S TENSOR REMARK 3 S11: 0.2308 S12: 0.6307 S13: 0.4559 REMARK 3 S21: -0.6920 S22: -0.0939 S23: 0.1358 REMARK 3 S31: -0.2335 S32: -0.2649 S33: -0.1186 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 179 THROUGH 242 ) REMARK 3 ORIGIN FOR THE GROUP (A): -26.4920 -0.5612 -16.5258 REMARK 3 T TENSOR REMARK 3 T11: 0.4280 T22: 0.2832 REMARK 3 T33: 0.3776 T12: 0.0789 REMARK 3 T13: 0.0071 T23: 0.1109 REMARK 3 L TENSOR REMARK 3 L11: 0.6587 L22: 1.9084 REMARK 3 L33: 2.7010 L12: 0.0369 REMARK 3 L13: -0.2775 L23: 0.1669 REMARK 3 S TENSOR REMARK 3 S11: 0.1312 S12: 0.1120 S13: 0.2938 REMARK 3 S21: -0.1637 S22: -0.0235 S23: 0.1281 REMARK 3 S31: -0.5251 S32: -0.2747 S33: -0.1065 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 243 THROUGH 290 ) REMARK 3 ORIGIN FOR THE GROUP (A): -20.0380 -11.9522 -9.7741 REMARK 3 T TENSOR REMARK 3 T11: 0.3106 T22: 0.2544 REMARK 3 T33: 0.3134 T12: 0.0403 REMARK 3 T13: -0.0153 T23: 0.0658 REMARK 3 L TENSOR REMARK 3 L11: 0.8068 L22: 1.4222 REMARK 3 L33: 2.0643 L12: -0.0710 REMARK 3 L13: 0.0600 L23: -0.1936 REMARK 3 S TENSOR REMARK 3 S11: 0.0288 S12: 0.0021 S13: -0.0014 REMARK 3 S21: -0.0391 S22: 0.0479 S23: 0.0415 REMARK 3 S31: 0.0639 S32: -0.0159 S33: -0.0705 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 291 THROUGH 316 ) REMARK 3 ORIGIN FOR THE GROUP (A): -20.1284 -1.1464 -3.9608 REMARK 3 T TENSOR REMARK 3 T11: 0.4038 T22: 0.3107 REMARK 3 T33: 0.3807 T12: 0.0603 REMARK 3 T13: -0.0013 T23: 0.0756 REMARK 3 L TENSOR REMARK 3 L11: 1.8137 L22: 2.3655 REMARK 3 L33: 1.2684 L12: -1.2663 REMARK 3 L13: -0.3360 L23: 0.0329 REMARK 3 S TENSOR REMARK 3 S11: -0.1533 S12: -0.1450 S13: 0.3395 REMARK 3 S21: 0.4303 S22: 0.1501 S23: -0.1556 REMARK 3 S31: -0.3205 S32: 0.1077 S33: -0.0017 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 317 THROUGH 351 ) REMARK 3 ORIGIN FOR THE GROUP (A): -29.4642 -17.1200 -6.5553 REMARK 3 T TENSOR REMARK 3 T11: 0.3669 T22: 0.2711 REMARK 3 T33: 0.3529 T12: 0.0027 REMARK 3 T13: 0.0327 T23: 0.0915 REMARK 3 L TENSOR REMARK 3 L11: 1.1743 L22: 1.6435 REMARK 3 L33: 1.4105 L12: -0.0006 REMARK 3 L13: -0.2046 L23: 0.2034 REMARK 3 S TENSOR REMARK 3 S11: -0.1630 S12: -0.0613 S13: -0.2180 REMARK 3 S21: 0.2290 S22: 0.1265 S23: 0.3683 REMARK 3 S31: 0.5171 S32: -0.1368 S33: 0.0219 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 352 THROUGH 377 ) REMARK 3 ORIGIN FOR THE GROUP (A): -33.4596 -17.9061 -14.6564 REMARK 3 T TENSOR REMARK 3 T11: 0.2597 T22: 0.2512 REMARK 3 T33: 0.3765 T12: -0.0074 REMARK 3 T13: -0.0303 T23: 0.0565 REMARK 3 L TENSOR REMARK 3 L11: 3.2597 L22: 1.9864 REMARK 3 L33: 3.1702 L12: -0.3014 REMARK 3 L13: -0.5835 L23: 0.7140 REMARK 3 S TENSOR REMARK 3 S11: -0.1643 S12: -0.0808 S13: -0.3064 REMARK 3 S21: 0.0292 S22: -0.0279 S23: 0.4385 REMARK 3 S31: 0.1680 S32: -0.3234 S33: 0.0987 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 378 THROUGH 401 ) REMARK 3 ORIGIN FOR THE GROUP (A): -12.6625 -15.7615 -27.8376 REMARK 3 T TENSOR REMARK 3 T11: 0.6010 T22: 0.4599 REMARK 3 T33: 0.3081 T12: 0.0582 REMARK 3 T13: 0.0902 T23: 0.0350 REMARK 3 L TENSOR REMARK 3 L11: 5.2452 L22: 2.2320 REMARK 3 L33: 3.3655 L12: -1.4121 REMARK 3 L13: 2.2120 L23: -0.5518 REMARK 3 S TENSOR REMARK 3 S11: 0.5615 S12: 1.1038 S13: 0.2694 REMARK 3 S21: -0.5838 S22: -0.3747 S23: -0.3067 REMARK 3 S31: 0.4342 S32: 0.7858 S33: -0.0760 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 402 THROUGH 428 ) REMARK 3 ORIGIN FOR THE GROUP (A): -13.1877 -25.4047 -26.4800 REMARK 3 T TENSOR REMARK 3 T11: 0.6621 T22: 0.4518 REMARK 3 T33: 0.4366 T12: 0.1016 REMARK 3 T13: 0.0855 T23: -0.0291 REMARK 3 L TENSOR REMARK 3 L11: 0.0289 L22: 1.3524 REMARK 3 L33: 1.9401 L12: 0.0125 REMARK 3 L13: -0.2184 L23: 0.6043 REMARK 3 S TENSOR REMARK 3 S11: -0.1514 S12: 0.3485 S13: -0.7346 REMARK 3 S21: -0.3006 S22: 0.1146 S23: -0.3481 REMARK 3 S31: 0.6557 S32: 0.5620 S33: 0.1265 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 429 THROUGH 501 ) REMARK 3 ORIGIN FOR THE GROUP (A): -34.9573 -21.2376 -27.4175 REMARK 3 T TENSOR REMARK 3 T11: 0.4952 T22: 0.6094 REMARK 3 T33: 0.4583 T12: -0.0877 REMARK 3 T13: -0.1472 T23: -0.0488 REMARK 3 L TENSOR REMARK 3 L11: 3.6385 L22: 2.6708 REMARK 3 L33: 3.9497 L12: -0.8066 REMARK 3 L13: -1.3800 L23: 0.6447 REMARK 3 S TENSOR REMARK 3 S11: 0.0362 S12: 0.8772 S13: -0.5829 REMARK 3 S21: -0.5476 S22: -0.2203 S23: 0.5207 REMARK 3 S31: 0.1871 S32: -1.1553 S33: 0.1168 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5UP0 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 07-FEB-17. REMARK 100 THE DEPOSITION ID IS D_1000226208. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 04-NOV-16 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.9 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ALS REMARK 200 BEAMLINE : 5.0.2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS3 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DIALS REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 34119 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.040 REMARK 200 RESOLUTION RANGE LOW (A) : 61.790 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 10.30 REMARK 200 R MERGE (I) : 0.07300 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 14.2000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.04 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.09 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 10.50 REMARK 200 R MERGE FOR SHELL (I) : 1.62600 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.600 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 1TAZ REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 60.55 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.12 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 3.1 M NACL, 0.1 M HEPES PH 6.9, VAPOR REMARK 280 DIFFUSION, HANGING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 43 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y+1/2,X+1/2,Z+3/4 REMARK 290 4555 Y+1/2,-X+1/2,Z+1/4 REMARK 290 5555 -X+1/2,Y+1/2,-Z+3/4 REMARK 290 6555 X+1/2,-Y+1/2,-Z+1/4 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 67.54400 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 43.69050 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 43.69050 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 101.31600 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 43.69050 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 43.69050 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 33.77200 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 43.69050 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 43.69050 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 101.31600 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 43.69050 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 43.69050 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 33.77200 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 67.54400 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 240 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 14820 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -49.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 VAL A 146 REMARK 465 GLY A 147 REMARK 465 PRO A 148 REMARK 465 THR A 149 REMARK 465 GLN A 445 REMARK 465 PRO A 446 REMARK 465 LEU A 447 REMARK 465 ALA A 448 REMARK 465 ASP A 449 REMARK 465 GLU A 450 REMARK 465 ASP A 451 REMARK 465 SER A 452 REMARK 465 LYS A 453 REMARK 465 SER A 454 REMARK 465 LYS A 455 REMARK 465 ASN A 456 REMARK 465 GLN A 457 REMARK 465 PRO A 458 REMARK 465 SER A 459 REMARK 465 PHE A 460 REMARK 465 GLN A 461 REMARK 465 TRP A 462 REMARK 465 ARG A 463 REMARK 465 GLN A 464 REMARK 465 PRO A 465 REMARK 465 SER A 466 REMARK 465 LEU A 467 REMARK 465 ASP A 468 REMARK 465 VAL A 469 REMARK 465 GLU A 470 REMARK 465 VAL A 471 REMARK 465 GLY A 472 REMARK 465 ASP A 473 REMARK 465 PRO A 474 REMARK 465 ASN A 475 REMARK 465 SER A 502 REMARK 465 GLY A 503 REMARK 465 ILE A 504 REMARK 465 THR A 505 REMARK 465 ASN A 506 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 177 34.86 71.67 REMARK 500 LEU A 353 26.22 45.95 REMARK 500 SER A 414 48.87 -141.00 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 601 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 227 NE2 REMARK 620 2 HIS A 263 NE2 97.6 REMARK 620 3 ASP A 264 OD2 97.0 82.9 REMARK 620 4 ASP A 370 OD2 82.0 90.2 172.9 REMARK 620 5 HOH A 703 O 166.7 94.5 89.9 92.6 REMARK 620 6 HOH A 775 O 88.5 171.8 101.8 85.2 78.9 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 602 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 264 OD1 REMARK 620 2 HOH A 703 O 99.9 REMARK 620 3 HOH A 716 O 84.1 89.5 REMARK 620 4 HOH A 732 O 85.9 173.3 87.7 REMARK 620 5 HOH A 745 O 167.2 85.6 84.4 88.1 REMARK 620 6 HOH A 783 O 99.9 93.0 174.8 89.3 91.3 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN A 601 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MG A 602 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue 8HP A 603 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 5UOY RELATED DB: PDB DBREF 5UP0 A 146 506 UNP Q01064 PDE1B_HUMAN 126 486 SEQRES 1 A 361 VAL GLY PRO THR TYR SER THR ALA VAL LEU ASN CYS LEU SEQRES 2 A 361 LYS ASN LEU ASP LEU TRP CYS PHE ASP VAL PHE SER LEU SEQRES 3 A 361 ASN GLN ALA ALA ASP ASP HIS ALA LEU ARG THR ILE VAL SEQRES 4 A 361 PHE GLU LEU LEU THR ARG HIS ASN LEU ILE SER ARG PHE SEQRES 5 A 361 LYS ILE PRO THR VAL PHE LEU MET SER PHE LEU ASP ALA SEQRES 6 A 361 LEU GLU THR GLY TYR GLY LYS TYR LYS ASN PRO TYR HIS SEQRES 7 A 361 ASN GLN ILE HIS ALA ALA ASP VAL THR GLN THR VAL HIS SEQRES 8 A 361 CYS PHE LEU LEU ARG THR GLY MET VAL HIS CYS LEU SER SEQRES 9 A 361 GLU ILE GLU LEU LEU ALA ILE ILE PHE ALA ALA ALA ILE SEQRES 10 A 361 HIS ASP TYR GLU HIS THR GLY THR THR ASN SER PHE HIS SEQRES 11 A 361 ILE GLN THR LYS SER GLU CYS ALA ILE VAL TYR ASN ASP SEQRES 12 A 361 ARG SER VAL LEU GLU ASN HIS HIS ILE SER SER VAL PHE SEQRES 13 A 361 ARG LEU MET GLN ASP ASP GLU MET ASN ILE PHE ILE ASN SEQRES 14 A 361 LEU THR LYS ASP GLU PHE VAL GLU LEU ARG ALA LEU VAL SEQRES 15 A 361 ILE GLU MET VAL LEU ALA THR ASP MET SER CYS HIS PHE SEQRES 16 A 361 GLN GLN VAL LYS THR MET LYS THR ALA LEU GLN GLN LEU SEQRES 17 A 361 GLU ARG ILE ASP LYS PRO LYS ALA LEU SER LEU LEU LEU SEQRES 18 A 361 HIS ALA ALA ASP ILE SER HIS PRO THR LYS GLN TRP LEU SEQRES 19 A 361 VAL HIS SER ARG TRP THR LYS ALA LEU MET GLU GLU PHE SEQRES 20 A 361 PHE ARG GLN GLY ASP LYS GLU ALA GLU LEU GLY LEU PRO SEQRES 21 A 361 PHE SER PRO LEU CYS ASP ARG THR SER THR LEU VAL ALA SEQRES 22 A 361 GLN SER GLN ILE GLY PHE ILE ASP PHE ILE VAL GLU PRO SEQRES 23 A 361 THR PHE SER VAL LEU THR ASP VAL ALA GLU LYS SER VAL SEQRES 24 A 361 GLN PRO LEU ALA ASP GLU ASP SER LYS SER LYS ASN GLN SEQRES 25 A 361 PRO SER PHE GLN TRP ARG GLN PRO SER LEU ASP VAL GLU SEQRES 26 A 361 VAL GLY ASP PRO ASN PRO ASP VAL VAL SER PHE ARG SER SEQRES 27 A 361 THR TRP VAL LYS ARG ILE GLN GLU ASN LYS GLN LYS TRP SEQRES 28 A 361 LYS GLU ARG ALA ALA SER GLY ILE THR ASN HET ZN A 601 1 HET MG A 602 1 HET 8HP A 603 25 HETNAM ZN ZINC ION HETNAM MG MAGNESIUM ION HETNAM 8HP 6-[(4-CHLOROPHENYL)METHYL]-8,9,10,11- HETNAM 2 8HP TETRAHYDRO[1]BENZOTHIENO[3,2-E][1,2,4]TRIAZOLO[1,5- HETNAM 3 8HP C]PYRIMIDIN-5(6H)-ONE FORMUL 2 ZN ZN 2+ FORMUL 3 MG MG 2+ FORMUL 4 8HP C18 H15 CL N4 O S FORMUL 5 HOH *105(H2 O) HELIX 1 AA1 SER A 151 LYS A 159 1 9 HELIX 2 AA2 ASP A 167 ALA A 175 1 9 HELIX 3 AA3 HIS A 178 HIS A 191 1 14 HELIX 4 AA4 ASN A 192 PHE A 197 1 6 HELIX 5 AA5 PRO A 200 GLY A 216 1 17 HELIX 6 AA6 ASN A 224 GLY A 243 1 20 HELIX 7 AA7 MET A 244 LEU A 248 5 5 HELIX 8 AA8 SER A 249 HIS A 263 1 15 HELIX 9 AA9 THR A 271 THR A 278 1 8 HELIX 10 AB1 SER A 280 ASN A 287 1 8 HELIX 11 AB2 SER A 290 MET A 304 1 15 HELIX 12 AB3 GLN A 305 ASN A 310 5 6 HELIX 13 AB4 THR A 316 ALA A 333 1 18 HELIX 14 AB5 THR A 334 SER A 337 5 4 HELIX 15 AB6 CYS A 338 GLN A 352 1 15 HELIX 16 AB7 ASP A 357 ILE A 371 1 15 HELIX 17 AB8 SER A 372 LYS A 376 5 5 HELIX 18 AB9 GLN A 377 LEU A 402 1 26 HELIX 19 AC1 LEU A 416 ILE A 428 1 13 HELIX 20 AC2 ILE A 428 VAL A 444 1 17 HELIX 21 AC3 ASP A 477 ALA A 500 1 24 LINK NE2 HIS A 227 ZN ZN A 601 1555 1555 2.33 LINK NE2 HIS A 263 ZN ZN A 601 1555 1555 2.16 LINK OD2 ASP A 264 ZN ZN A 601 1555 1555 2.08 LINK OD1 ASP A 264 MG MG A 602 1555 1555 2.15 LINK OD2 ASP A 370 ZN ZN A 601 1555 1555 2.05 LINK ZN ZN A 601 O HOH A 703 1555 1555 2.33 LINK ZN ZN A 601 O HOH A 775 1555 1555 2.35 LINK MG MG A 602 O HOH A 703 1555 1555 1.97 LINK MG MG A 602 O HOH A 716 1555 1555 2.13 LINK MG MG A 602 O HOH A 732 1555 1555 2.10 LINK MG MG A 602 O HOH A 745 1555 1555 2.20 LINK MG MG A 602 O HOH A 783 1555 1555 1.93 SITE 1 AC1 6 HIS A 227 HIS A 263 ASP A 264 ASP A 370 SITE 2 AC1 6 HOH A 703 HOH A 775 SITE 1 AC2 6 ASP A 264 HOH A 703 HOH A 716 HOH A 732 SITE 2 AC2 6 HOH A 745 HOH A 783 SITE 1 AC3 6 HIS A 373 LEU A 388 MET A 389 LEU A 409 SITE 2 AC3 6 GLN A 421 PHE A 424 CRYST1 87.381 87.381 135.088 90.00 90.00 90.00 P 43 21 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.011444 0.000000 0.000000 0.00000 SCALE2 0.000000 0.011444 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007403 0.00000