HEADER TRANSFERASE 02-FEB-17 5UPD TITLE METHYLTRANSFERASE DOMAIN OF HUMAN WOLF-HIRSCHHORN SYNDROME CANDIDATE TITLE 2 1-LIKE PROTEIN 1 (WHSC1L1) COMPND MOL_ID: 1; COMPND 2 MOLECULE: HISTONE-LYSINE N-METHYLTRANSFERASE NSD3; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: NUCLEAR SET DOMAIN-CONTAINING PROTEIN 3,PROTEIN WHISTLE, COMPND 5 WHSC1-LIKE 1 ISOFORM 9 WITH METHYLTRANSFERASE ACTIVITY TO LYSINE, COMPND 6 WOLF-HIRSCHHORN SYNDROME CANDIDATE 1-LIKE PROTEIN 1,WHSC1-LIKE COMPND 7 PROTEIN 1; COMPND 8 EC: 2.1.1.43; COMPND 9 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: WHSC1L1, NSD3, DC28; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21 (DE3) PRARE-V2R; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PET28-MHL KEYWDS STRUCTURAL GENOMICS CONSORTIUM, METHYL TRANSFERASE, SGC, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR W.TEMPEL,W.YU,A.DONG,T.CEROVINA,C.BOUNTRA,C.H.ARROWSMITH,A.M.EDWARDS, AUTHOR 2 P.J.BROWN,H.WU,STRUCTURAL GENOMICS CONSORTIUM (SGC) REVDAT 3 04-OCT-23 5UPD 1 REMARK REVDAT 2 08-MAR-17 5UPD 1 SPRSDE REVDAT 1 15-FEB-17 5UPD 0 SPRSDE 08-MAR-17 5UPD 4YZ8 JRNL AUTH W.TEMPEL,W.YU,A.DONG,T.CEROVINA,C.BOUNTRA,C.H.ARROWSMITH, JRNL AUTH 2 A.M.EDWARDS,P.J.BROWN,H.WU JRNL TITL METHYLTRANSFERASE DOMAIN OF HUMAN WOLF-HIRSCHHORN SYNDROME JRNL TITL 2 CANDIDATE 1-LIKE PROTEIN 1 (WHSC1L1) JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.80 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0158 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.80 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 41.55 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 98.8 REMARK 3 NUMBER OF REFLECTIONS : 21949 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : NULL REMARK 3 R VALUE (WORKING + TEST SET) : 0.186 REMARK 3 R VALUE (WORKING SET) : 0.184 REMARK 3 FREE R VALUE : 0.218 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.800 REMARK 3 FREE R VALUE TEST SET COUNT : 1118 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.80 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.85 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1596 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 95.93 REMARK 3 BIN R VALUE (WORKING SET) : 0.3080 REMARK 3 BIN FREE R VALUE SET COUNT : 79 REMARK 3 BIN FREE R VALUE : 0.2850 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1644 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 47 REMARK 3 SOLVENT ATOMS : 144 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 24.40 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 1.35000 REMARK 3 B22 (A**2) : -0.52000 REMARK 3 B33 (A**2) : -0.93000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.47000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.123 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.118 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.091 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 3.051 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.954 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.933 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 1781 ; 0.016 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 1600 ; 0.002 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 2407 ; 1.801 ; 1.979 REMARK 3 BOND ANGLES OTHERS (DEGREES): 3725 ; 1.033 ; 3.006 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 224 ; 6.008 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 86 ;30.055 ;23.837 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 312 ;13.356 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 18 ;21.717 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 253 ; 0.109 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 1986 ; 0.008 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 361 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 864 ; 2.221 ; 2.332 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 864 ; 2.221 ; 2.332 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 1079 ; 3.416 ; 3.487 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: ARP/WARP WAS USED FOR AUTOMATED MODEL REMARK 3 BUILDING. COOT WAS USED FOR INTERACTIVE MODEL BUILDING. REMARK 3 PHENIX.MOLPROBITY WAS USED FOR VALIDATION OF MODEL GEOMETRY REMARK 4 REMARK 4 5UPD COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 03-FEB-17. REMARK 100 THE DEPOSITION ID IS D_1000226237. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 29-JAN-15 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : CLSI REMARK 200 BEAMLINE : 08ID-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97957 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : RAYONIX MX-300 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XIA2, XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS 0.5.31 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 23067 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.800 REMARK 200 RESOLUTION RANGE LOW (A) : 41.550 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.9 REMARK 200 DATA REDUNDANCY : 3.700 REMARK 200 R MERGE (I) : 0.10500 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 11.1000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.80 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.85 REMARK 200 COMPLETENESS FOR SHELL (%) : 96.2 REMARK 200 DATA REDUNDANCY IN SHELL : 3.20 REMARK 200 R MERGE FOR SHELL (I) : 0.71400 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PDB ENTRY 3OOI REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 48.87 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.41 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 20% PEG-5000-MME, 0.1 M BIS-TRIS, 0.02 REMARK 280 M SARCOSINE, PH 6.5, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE REMARK 280 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 31.40500 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: AUTHOR-DETERMINED QUATERNARY STRUCTURE: NOT AVAILABLE REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 1053 REMARK 465 GLN A 1054 REMARK 465 ARG A 1055 REMARK 465 GLU A 1056 REMARK 465 SER A 1057 REMARK 465 LYS A 1058 REMARK 465 GLU A 1059 REMARK 465 ALA A 1060 REMARK 465 LEU A 1061 REMARK 465 GLU A 1062 REMARK 465 ILE A 1063 REMARK 465 GLU A 1064 REMARK 465 LYS A 1065 REMARK 465 ASN A 1066 REMARK 465 SER A 1067 REMARK 465 ARG A 1068 REMARK 465 ASP A 1264 REMARK 465 CYS A 1265 REMARK 465 LEU A 1266 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A1069 N CB CG CD CE NZ REMARK 470 LYS A1077 NZ REMARK 470 LYS A1084 CE NZ REMARK 470 GLN A1086 CG CD OE1 NE2 REMARK 470 ILE A1087 CG1 CG2 CD1 REMARK 470 GLN A1088 CG CD OE1 NE2 REMARK 470 GLU A1105 CG CD OE1 OE2 REMARK 470 GLU A1111 CG CD OE1 OE2 REMARK 470 GLU A1113 CG CD OE1 OE2 REMARK 470 ARG A1154 NH1 NH2 REMARK 470 LYS A1166 CD CE NZ REMARK 470 LYS A1206 CD CE NZ REMARK 470 LEU A1263 C O CB CG CD1 CD2 REMARK 470 GLY A1285 C O REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A1217 -163.30 -124.02 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A1319 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A1098 SG REMARK 620 2 CYS A1100 SG 105.1 REMARK 620 3 CYS A1108 SG 105.8 105.2 REMARK 620 4 CYS A1114 SG 116.2 107.2 116.3 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A1320 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A1108 SG REMARK 620 2 CYS A1123 SG 112.9 REMARK 620 3 CYS A1128 SG 103.2 116.3 REMARK 620 4 CYS A1134 SG 112.2 102.7 109.9 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A1321 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A1226 SG REMARK 620 2 CYS A1273 SG 118.0 REMARK 620 3 CYS A1275 SG 105.4 105.5 REMARK 620 4 CYS A1280 SG 109.6 108.7 109.2 REMARK 620 N 1 2 3 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SAM A 1301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN A 1319 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN A 1320 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN A 1321 DBREF 5UPD A 1054 1285 UNP Q9BZ95 NSD3_HUMAN 1054 1285 SEQADV 5UPD GLY A 1053 UNP Q9BZ95 EXPRESSION TAG SEQRES 1 A 233 GLY GLN ARG GLU SER LYS GLU ALA LEU GLU ILE GLU LYS SEQRES 2 A 233 ASN SER ARG LYS PRO PRO PRO TYR LYS HIS ILE LYS ALA SEQRES 3 A 233 ASN LYS VAL ILE GLY LYS VAL GLN ILE GLN VAL ALA ASP SEQRES 4 A 233 LEU SER GLU ILE PRO ARG CYS ASN CYS LYS PRO ALA ASP SEQRES 5 A 233 GLU ASN PRO CYS GLY LEU GLU SER GLU CYS LEU ASN ARG SEQRES 6 A 233 MET LEU GLN TYR GLU CYS HIS PRO GLN VAL CYS PRO ALA SEQRES 7 A 233 GLY ASP ARG CYS GLN ASN GLN CYS PHE THR LYS ARG LEU SEQRES 8 A 233 TYR PRO ASP ALA GLU ILE ILE LYS THR GLU ARG ARG GLY SEQRES 9 A 233 TRP GLY LEU ARG THR LYS ARG SER ILE LYS LYS GLY GLU SEQRES 10 A 233 PHE VAL ASN GLU TYR VAL GLY GLU LEU ILE ASP GLU GLU SEQRES 11 A 233 GLU CYS ARG LEU ARG ILE LYS ARG ALA HIS GLU ASN SER SEQRES 12 A 233 VAL THR ASN PHE TYR MET LEU THR VAL THR LYS ASP ARG SEQRES 13 A 233 ILE ILE ASP ALA GLY PRO LYS GLY ASN TYR SER ARG PHE SEQRES 14 A 233 MET ASN HIS SER CYS ASN PRO ASN CYS GLU THR GLN LYS SEQRES 15 A 233 TRP THR VAL ASN GLY ASP VAL ARG VAL GLY LEU PHE ALA SEQRES 16 A 233 LEU CYS ASP ILE PRO ALA GLY MET GLU LEU THR PHE ASN SEQRES 17 A 233 TYR ASN LEU ASP CYS LEU GLY ASN GLY ARG THR GLU CYS SEQRES 18 A 233 HIS CYS GLY ALA ASP ASN CYS SER GLY PHE LEU GLY HET SAM A1301 27 HET UNX A1302 1 HET UNX A1303 1 HET UNX A1304 1 HET UNX A1305 1 HET UNX A1306 1 HET UNX A1307 1 HET UNX A1308 1 HET UNX A1309 1 HET UNX A1310 1 HET UNX A1311 1 HET UNX A1312 1 HET UNX A1313 1 HET UNX A1314 1 HET UNX A1315 1 HET UNX A1316 1 HET UNX A1317 1 HET UNX A1318 1 HET ZN A1319 1 HET ZN A1320 1 HET ZN A1321 1 HETNAM SAM S-ADENOSYLMETHIONINE HETNAM UNX UNKNOWN ATOM OR ION HETNAM ZN ZINC ION FORMUL 2 SAM C15 H22 N6 O5 S FORMUL 3 UNX 17(X) FORMUL 20 ZN 3(ZN 2+) FORMUL 23 HOH *144(H2 O) HELIX 1 AA1 ASP A 1091 ILE A 1095 5 5 HELIX 2 AA2 CYS A 1114 LEU A 1119 1 6 HELIX 3 AA3 GLN A 1137 ARG A 1142 1 6 HELIX 4 AA4 ASP A 1180 ASN A 1194 1 15 HELIX 5 AA5 ASN A 1217 MET A 1222 5 6 SHEET 1 AA1 2 LYS A1074 HIS A1075 0 SHEET 2 AA1 2 LYS A1215 GLY A1216 1 O GLY A1216 N LYS A1074 SHEET 1 AA2 4 LYS A1080 VAL A1081 0 SHEET 2 AA2 4 GLU A1177 ILE A1179 1 O LEU A1178 N LYS A1080 SHEET 3 AA2 4 ARG A1208 ASP A1211 -1 O ASP A1211 N GLU A1177 SHEET 4 AA2 4 MET A1201 THR A1205 -1 N LEU A1202 O ILE A1210 SHEET 1 AA3 2 ALA A1147 LYS A1151 0 SHEET 2 AA3 2 TRP A1157 THR A1161 -1 O ARG A1160 N GLU A1148 SHEET 1 AA4 3 PHE A1170 TYR A1174 0 SHEET 2 AA4 3 ASP A1240 ALA A1247 -1 O LEU A1245 N VAL A1171 SHEET 3 AA4 3 CYS A1230 VAL A1237 -1 N TRP A1235 O ARG A1242 SHEET 1 AA5 2 ASN A1223 HIS A1224 0 SHEET 2 AA5 2 THR A1258 PHE A1259 1 O PHE A1259 N ASN A1223 LINK SG CYS A1098 ZN ZN A1319 1555 1555 2.32 LINK SG CYS A1100 ZN ZN A1319 1555 1555 2.36 LINK SG CYS A1108 ZN ZN A1319 1555 1555 2.22 LINK SG CYS A1108 ZN ZN A1320 1555 1555 2.36 LINK SG CYS A1114 ZN ZN A1319 1555 1555 2.37 LINK SG CYS A1123 ZN ZN A1320 1555 1555 2.36 LINK SG CYS A1128 ZN ZN A1320 1555 1555 2.37 LINK SG CYS A1134 ZN ZN A1320 1555 1555 2.25 LINK SG CYS A1226 ZN ZN A1321 1555 1555 2.38 LINK SG CYS A1273 ZN ZN A1321 1555 1555 2.30 LINK SG CYS A1275 ZN ZN A1321 1555 1555 2.32 LINK SG CYS A1280 ZN ZN A1321 1555 1555 2.33 SITE 1 AC1 19 ARG A1155 TRP A1157 THR A1197 ASN A1198 SITE 2 AC1 19 PHE A1199 TYR A1200 ARG A1220 ASN A1223 SITE 3 AC1 19 HIS A1224 TYR A1261 GLU A1272 CYS A1273 SITE 4 AC1 19 HIS A1274 LEU A1284 HOH A1433 HOH A1438 SITE 5 AC1 19 HOH A1444 HOH A1456 HOH A1483 SITE 1 AC2 4 CYS A1098 CYS A1100 CYS A1108 CYS A1114 SITE 1 AC3 4 CYS A1108 CYS A1123 CYS A1128 CYS A1134 SITE 1 AC4 4 CYS A1226 CYS A1273 CYS A1275 CYS A1280 CRYST1 44.160 62.810 48.840 90.00 109.78 90.00 P 1 21 1 2 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.022645 0.000000 0.008144 0.00000 SCALE2 0.000000 0.015921 0.000000 0.00000 SCALE3 0.000000 0.000000 0.021759 0.00000