HEADER TRANSFERASE 03-FEB-17 5UPT TITLE ACYL-COA SYNTHETASE PTMA2 FROM STREPTOMYCES PLATENSIS IN COMPLEX WITH TITLE 2 SBNP468 LIGAND COMPND MOL_ID: 1; COMPND 2 MOLECULE: ACYL-COA SYNTHETASE PTMA2; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: STREPTOMYCES PLATENSIS SUBSP. ROSACEUS; SOURCE 3 ORGANISM_TAXID: 684832; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI 'BL21-GOLD(DE3)PLYSS AG'; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 866768; SOURCE 6 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 7 EXPRESSION_SYSTEM_PLASMID: PMCSG68 KEYWDS ACYL-COA SYNTHETASE, PTMA2, STRUCTURAL GENOMICS, APC109894, KEYWDS 2 TRANSFERASE, MIDWEST CENTER FOR STRUCTURAL GENOMICS, MCSG, ENZYME KEYWDS 3 DISCOVERY FOR NATURAL PRODUCT BIOSYNTHESIS, NATPRO, PSI-BIOLOGY EXPDTA X-RAY DIFFRACTION AUTHOR J.OSIPIUK,C.HATZOS-SKINTGES,M.ENDRES,G.BABNIGG,J.D.RUDOLF,C.Y.CHANG, AUTHOR 2 M.MA,B.SHEN,G.N.PHILLIPS JR.,A.JOACHIMIAK,MIDWEST CENTER FOR AUTHOR 3 STRUCTURAL GENOMICS (MCSG),ENZYME DISCOVERY FOR NATURAL PRODUCT AUTHOR 4 BIOSYNTHESIS (NATPRO) REVDAT 7 20-NOV-24 5UPT 1 REMARK REVDAT 6 15-NOV-23 5UPT 1 REMARK REVDAT 5 04-OCT-23 5UPT 1 REMARK REVDAT 4 11-JUL-18 5UPT 1 JRNL REVDAT 3 22-NOV-17 5UPT 1 REMARK REVDAT 2 22-MAR-17 5UPT 1 TITLE KEYWDS JRNL REVDAT 1 22-FEB-17 5UPT 0 JRNL AUTH N.WANG,J.D.RUDOLF,L.B.DONG,J.OSIPIUK,C.HATZOS-SKINTGES, JRNL AUTH 2 M.ENDRES,C.Y.CHANG,G.BABNIGG,A.JOACHIMIAK,G.N.PHILLIPS, JRNL AUTH 3 B.SHEN JRNL TITL NATURAL SEPARATION OF THE ACYL-COA LIGASE REACTION RESULTS JRNL TITL 2 IN A NON-ADENYLATING ENZYME. JRNL REF NAT. CHEM. BIOL. V. 14 730 2018 JRNL REFN ESSN 1552-4469 JRNL PMID 29867143 JRNL DOI 10.1038/S41589-018-0061-0 REMARK 2 REMARK 2 RESOLUTION. 1.92 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0069 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.92 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 36.20 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.3 REMARK 3 NUMBER OF REFLECTIONS : 56197 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.166 REMARK 3 R VALUE (WORKING SET) : 0.164 REMARK 3 FREE R VALUE : 0.196 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 2994 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.92 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.97 REMARK 3 REFLECTION IN BIN (WORKING SET) : 4023 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 97.77 REMARK 3 BIN R VALUE (WORKING SET) : 0.2520 REMARK 3 BIN FREE R VALUE SET COUNT : 186 REMARK 3 BIN FREE R VALUE : 0.2940 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3945 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 100 REMARK 3 SOLVENT ATOMS : 378 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 31.29 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.10000 REMARK 3 B22 (A**2) : -0.10000 REMARK 3 B33 (A**2) : 0.19000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.109 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.108 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.075 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 5.328 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.967 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.954 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 4185 ; 0.013 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 3916 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 5739 ; 1.650 ; 1.978 REMARK 3 BOND ANGLES OTHERS (DEGREES): 8977 ; 0.829 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 528 ; 5.891 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 191 ;28.494 ;22.304 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 583 ;12.448 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 45 ;17.692 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 633 ; 0.098 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 4748 ; 0.008 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 991 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 1 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 2 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A -1 A 513 REMARK 3 RESIDUE RANGE : A 701 A 709 REMARK 3 ORIGIN FOR THE GROUP (A): 21.5580 49.6840 37.9704 REMARK 3 T TENSOR REMARK 3 T11: 0.0355 T22: 0.0426 REMARK 3 T33: 0.0095 T12: 0.0060 REMARK 3 T13: 0.0063 T23: -0.0158 REMARK 3 L TENSOR REMARK 3 L11: 0.0794 L22: 0.0780 REMARK 3 L33: 0.3419 L12: -0.0721 REMARK 3 L13: -0.0135 L23: 0.0514 REMARK 3 S TENSOR REMARK 3 S11: -0.0052 S12: 0.0058 S13: -0.0033 REMARK 3 S21: -0.0134 S22: -0.0225 S23: 0.0060 REMARK 3 S31: -0.0378 S32: -0.0453 S33: 0.0278 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS U VALUES : WITH TLS ADDED REMARK 4 REMARK 4 5UPT COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 09-FEB-17. REMARK 100 THE DEPOSITION ID IS D_1000226278. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 09-DEC-15 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 19-BM REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9792 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 210R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-3000, DENZO REMARK 200 DATA SCALING SOFTWARE : HKL-3000, SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 59353 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.920 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.5 REMARK 200 DATA REDUNDANCY : 9.000 REMARK 200 R MERGE (I) : 0.09700 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 11.5000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.92 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.95 REMARK 200 COMPLETENESS FOR SHELL (%) : 98.7 REMARK 200 DATA REDUNDANCY IN SHELL : 5.90 REMARK 200 R MERGE FOR SHELL (I) : 0.84100 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.200 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: HKL-3000 REMARK 200 STARTING MODEL: 5E7Q REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 63.12 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.34 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M BIS_TRIS PROPANE BUFFER, 1.5 M REMARK 280 LITHIUM SULFATE, 0.01 M HEXAMMINE COBALT CHLORIDE, PH 7.0, VAPOR REMARK 280 DIFFUSION, SITTING DROP, TEMPERATURE 289K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 43 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y+1/2,X+1/2,Z+3/4 REMARK 290 4555 Y+1/2,-X+1/2,Z+1/4 REMARK 290 5555 -X+1/2,Y+1/2,-Z+3/4 REMARK 290 6555 X+1/2,-Y+1/2,-Z+1/4 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 35.56900 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 73.07900 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 73.07900 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 53.35350 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 73.07900 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 73.07900 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 17.78450 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 73.07900 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 73.07900 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 53.35350 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 73.07900 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 73.07900 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 17.78450 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 35.56900 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 6340 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 39320 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -98.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 71.13800 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 SER A -2 REMARK 465 GLY A 514 REMARK 465 ALA A 515 REMARK 465 ALA A 516 REMARK 465 THR A 517 REMARK 465 LEU A 518 REMARK 465 GLY A 519 REMARK 465 PRO A 520 REMARK 465 GLY A 521 REMARK 465 ARG A 522 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 1139 O HOH A 1141 1.65 REMARK 500 O HOH A 1061 O HOH A 1145 2.06 REMARK 500 O HOH A 1131 O HOH A 1145 2.07 REMARK 500 O HOH A 937 O HOH A 1004 2.14 REMARK 500 O HOH A 1127 O HOH A 1159 2.15 REMARK 500 O HOH A 1087 O HOH A 1151 2.16 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 335 NE - CZ - NH1 ANGL. DEV. = 3.2 DEGREES REMARK 500 ARG A 383 NE - CZ - NH1 ANGL. DEV. = 3.1 DEGREES REMARK 500 ARG A 395 NE - CZ - NH1 ANGL. DEV. = 3.1 DEGREES REMARK 500 ARG A 395 NE - CZ - NH2 ANGL. DEV. = -3.7 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LEU A 60 66.62 -116.54 REMARK 500 GLU A 111 -23.84 69.40 REMARK 500 ASP A 135 47.88 -97.19 REMARK 500 TRP A 222 27.11 -150.91 REMARK 500 ALA A 414 -128.73 52.84 REMARK 500 TRP A 446 37.66 -148.37 REMARK 500 ALA A 447 -60.73 70.59 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue 8JG A 701 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue 8JG A 702 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue 8JG A 703 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 704 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 705 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 706 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 707 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 708 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CL A 709 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 5E7Q RELATED DB: PDB REMARK 900 ACYL-COA SYNTHETASE PTMA2 FROM STREPTOMYCES PLATENSIS, APO STRUCTUE REMARK 900 RELATED ID: 5UPQ RELATED DB: PDB REMARK 900 ACYL-COA SYNTHETASE PTMM4 FROM STREPTOMYCES PLATENSIS IN COMPLEX REMARK 900 WITH SBNP465 LIGAND REMARK 900 RELATED ID: 5UPS RELATED DB: PDB REMARK 900 ACYL-COA SYNTHETASE PTMM4 FROM STREPTOMYCES PLATENSIS IN COMPLEX REMARK 900 WITH SBNP663 LIGAND REMARK 900 RELATED ID: MCSG-APC109894 RELATED DB: TARGETTRACK DBREF1 5UPT A 2 522 UNP A0A0A0V031_STRPT DBREF2 5UPT A A0A0A0V031 2 522 SEQADV 5UPT SER A -2 UNP A0A0A0V03 EXPRESSION TAG SEQADV 5UPT ASN A -1 UNP A0A0A0V03 EXPRESSION TAG SEQADV 5UPT ALA A 0 UNP A0A0A0V03 EXPRESSION TAG SEQADV 5UPT LEU A 1 UNP A0A0A0V03 EXPRESSION TAG SEQADV 5UPT PRO A 141 UNP A0A0A0V03 ALA 141 CONFLICT SEQADV 5UPT ASP A 246 UNP A0A0A0V03 GLY 246 CONFLICT SEQRES 1 A 525 SER ASN ALA LEU GLN HIS THR THR ILE GLY ASP VAL LEU SEQRES 2 A 525 ARG GLU HIS ARG ARG SER HIS PRO GLY ARG THR ALA LEU SEQRES 3 A 525 VAL ASP GLY PRO VAL ARG LEU THR TRP PRO GLU LEU ASP SEQRES 4 A 525 ASP ARG VAL ASN ARG LEU ALA GLY SER LEU ALA ALA SER SEQRES 5 A 525 GLY ILE GLY ARG GLY ASP ARG ILE MSE TRP LEU GLY GLN SEQRES 6 A 525 ASN SER PHE ARG VAL TYR GLU LEU ILE ALA ALA ALA GLY SEQRES 7 A 525 LYS LEU GLY ALA MSE VAL CYS VAL GLY TYR TRP ARG TRP SEQRES 8 A 525 ALA PRO PRO GLU MSE GLU PHE ALA LEU ARG ASP PHE ASP SEQRES 9 A 525 PRO HIS LEU VAL VAL TRP GLN HIS GLN GLU ILE HIS GLU SEQRES 10 A 525 THR VAL ALA ARG THR ARG GLU ALA LEU GLY SER ASP ASP SEQRES 11 A 525 THR ALA ARG TRP LEU ARG HIS ASP SER ALA PRO GLN ASP SEQRES 12 A 525 PRO ASP GLY TYR GLU ALA PHE LEU ALA ALA GLY GLY LEU SEQRES 13 A 525 ALA ASP PRO ASP LEU ASP ILE ASP PRO ASP SER PRO VAL SEQRES 14 A 525 LEU VAL LEU TYR THR ALA ALA MSE SER GLY ARG GLN CYS SEQRES 15 A 525 GLY SER LEU LEU SER HIS THR ASN LEU ILE ALA MSE ALA SEQRES 16 A 525 THR ALA ALA ALA TRP LEU GLY ASP ILE ASP HIS THR THR SEQRES 17 A 525 ALA PHE LEU ASN SER GLY PRO MSE PHE HIS ILE GLY ASN SEQRES 18 A 525 HIS GLN PHE TRP GLY MSE PRO THR LEU LEU MSE ALA GLY SEQRES 19 A 525 LYS ASN VAL ILE VAL ARG ARG VAL VAL ALA GLU GLU VAL SEQRES 20 A 525 ARG ASP LEU LEU VAL ALA GLU GLU CYS THR HIS ALA PHE SEQRES 21 A 525 LEU MSE PRO PRO THR VAL ALA GLU ILE VAL ARG LEU ASN SEQRES 22 A 525 ARG ASP THR GLY HIS ASP LEU SER ARG LEU ARG ALA THR SEQRES 23 A 525 VAL ALA PRO HIS LEU TRP GLU GLY MSE ALA THR THR ASP SEQRES 24 A 525 THR SER ARG PHE THR ARG SER GLY ALA ALA ALA GLY ARG SEQRES 25 A 525 GLY TYR GLY GLN THR GLU LEU SER GLY PHE ALA VAL THR SEQRES 26 A 525 ALA ALA TYR GLY GLY PRO ALA ALA GLY ASN ALA GLY ARG SEQRES 27 A 525 PRO GLY PRO GLY LEU THR VAL ARG VAL LEU ASP THR ALA SEQRES 28 A 525 GLY ARG GLU CYS ALA VAL GLY GLU ALA GLY GLU ILE CYS SEQRES 29 A 525 ALA ARG GLY THR VAL VAL HIS ARG GLY TYR TRP ASN ARG SEQRES 30 A 525 ASP GLU VAL ASN ALA HIS ARG PHE ARG SER GLY TRP TRP SEQRES 31 A 525 HIS THR THR ASP LEU GLY ARG ARG GLU PRO ASP GLY SER SEQRES 32 A 525 LEU THR PHE LEU GLY THR THR THR ARG MSE LEU LYS SER SEQRES 33 A 525 ALA ALA GLU ASN ILE PHE PRO ALA GLU VAL GLU ASN CYS SEQRES 34 A 525 ILE GLU GLN HIS PRO ALA VAL ARG GLU ALA ALA VAL ILE SEQRES 35 A 525 GLY VAL PRO ASN THR ARG TRP ALA GLN ASP VAL LYS ALA SEQRES 36 A 525 VAL VAL VAL LEU GLU PRO ASP ALA GLY VAL SER GLU GLN SEQRES 37 A 525 GLU ILE ILE ASP HIS CYS ARG PRO ARG ILE ALA SER TYR SEQRES 38 A 525 LYS LYS PRO LYS SER VAL ALA PHE ALA ALA ALA LEU PRO SEQRES 39 A 525 ARG THR VAL SER GLY ALA ARG ASP TYR ASP ALA LEU ASP SEQRES 40 A 525 LYS GLU TYR GLY GLY GLY GLY TYR PRO GLY ALA ALA THR SEQRES 41 A 525 LEU GLY PRO GLY ARG MODRES 5UPT MSE A 58 MET MODIFIED RESIDUE MODRES 5UPT MSE A 80 MET MODIFIED RESIDUE MODRES 5UPT MSE A 93 MET MODIFIED RESIDUE MODRES 5UPT MSE A 174 MET MODIFIED RESIDUE MODRES 5UPT MSE A 191 MET MODIFIED RESIDUE MODRES 5UPT MSE A 213 MET MODIFIED RESIDUE MODRES 5UPT MSE A 224 MET MODIFIED RESIDUE MODRES 5UPT MSE A 229 MET MODIFIED RESIDUE MODRES 5UPT MSE A 259 MET MODIFIED RESIDUE MODRES 5UPT MSE A 292 MET MODIFIED RESIDUE MODRES 5UPT MSE A 410 MET MODIFIED RESIDUE HET MSE A 58 8 HET MSE A 80 8 HET MSE A 93 8 HET MSE A 174 13 HET MSE A 191 8 HET MSE A 213 8 HET MSE A 224 8 HET MSE A 229 8 HET MSE A 259 8 HET MSE A 292 8 HET MSE A 410 8 HET 8JG A 701 24 HET 8JG A 702 24 HET 8JG A 703 24 HET SO4 A 704 5 HET SO4 A 705 5 HET SO4 A 706 5 HET GOL A 707 6 HET GOL A 708 6 HET CL A 709 1 HETNAM MSE SELENOMETHIONINE HETNAM 8JG (7ALPHA,8ALPHA,10ALPHA,13ALPHA)-7,16-DIHYDROXYKAURAN- HETNAM 2 8JG 18-OIC ACID HETNAM SO4 SULFATE ION HETNAM GOL GLYCEROL HETNAM CL CHLORIDE ION HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 1 MSE 11(C5 H11 N O2 SE) FORMUL 2 8JG 3(C20 H32 O4) FORMUL 5 SO4 3(O4 S 2-) FORMUL 8 GOL 2(C3 H8 O3) FORMUL 10 CL CL 1- FORMUL 11 HOH *378(H2 O) HELIX 1 AA1 THR A 5 HIS A 17 1 13 HELIX 2 AA2 TRP A 32 SER A 49 1 18 HELIX 3 AA3 SER A 64 LEU A 77 1 14 HELIX 4 AA4 ALA A 89 ASP A 101 1 13 HELIX 5 AA5 ILE A 112 GLY A 124 1 13 HELIX 6 AA6 SER A 125 ASP A 127 5 3 HELIX 7 AA7 GLY A 143 ALA A 150 1 8 HELIX 8 AA8 HIS A 185 ASP A 200 1 16 HELIX 9 AA9 HIS A 215 PHE A 221 1 7 HELIX 10 AB1 TRP A 222 MSE A 229 1 8 HELIX 11 AB2 VAL A 240 GLU A 251 1 12 HELIX 12 AB3 MSE A 259 ARG A 271 1 13 HELIX 13 AB4 ALA A 285 GLU A 290 5 6 HELIX 14 AB5 SER A 298 SER A 303 1 6 HELIX 15 AB6 GLY A 304 GLY A 308 5 5 HELIX 16 AB7 THR A 314 SER A 317 5 4 HELIX 17 AB8 ARG A 374 PHE A 382 1 9 HELIX 18 AB9 ARG A 383 TRP A 386 5 4 HELIX 19 AC1 PHE A 419 GLN A 429 1 11 HELIX 20 AC2 SER A 463 ARG A 472 1 10 HELIX 21 AC3 ALA A 476 LYS A 480 5 5 HELIX 22 AC4 ASP A 499 GLY A 508 1 10 SHEET 1 AA1 5 VAL A 28 THR A 31 0 SHEET 2 AA1 5 THR A 21 ASP A 25 -1 N LEU A 23 O LEU A 30 SHEET 3 AA1 5 LYS A 232 ILE A 235 1 O ILE A 235 N VAL A 24 SHEET 4 AA1 5 ALA A 206 ASN A 209 1 N ASN A 209 O VAL A 234 SHEET 5 AA1 5 HIS A 255 ALA A 256 1 O HIS A 255 N LEU A 208 SHEET 1 AA2 6 ARG A 130 ARG A 133 0 SHEET 2 AA2 6 LEU A 104 TRP A 107 1 N VAL A 105 O ARG A 130 SHEET 3 AA2 6 ARG A 56 LEU A 60 1 N LEU A 60 O VAL A 106 SHEET 4 AA2 6 MSE A 80 VAL A 83 1 O CYS A 82 N TRP A 59 SHEET 5 AA2 6 PRO A 165 ALA A 172 1 O VAL A 168 N VAL A 81 SHEET 6 AA2 6 GLN A 178 SER A 184 -1 O LEU A 183 N LEU A 167 SHEET 1 AA3 2 ARG A 281 ALA A 282 0 SHEET 2 AA3 2 THR A 294 THR A 295 1 O THR A 294 N ALA A 282 SHEET 1 AA4 3 GLY A 310 GLN A 313 0 SHEET 2 AA4 3 GLY A 318 THR A 322 -1 O VAL A 321 N TYR A 311 SHEET 3 AA4 3 ARG A 335 PRO A 336 -1 O ARG A 335 N THR A 322 SHEET 1 AA5 4 THR A 341 LEU A 345 0 SHEET 2 AA5 4 GLY A 358 ARG A 363 -1 O CYS A 361 N ARG A 343 SHEET 3 AA5 4 TRP A 387 ARG A 395 -1 O ASP A 391 N ILE A 360 SHEET 4 AA5 4 LEU A 401 THR A 406 -1 O GLY A 405 N LEU A 392 SHEET 1 AA6 2 LEU A 411 SER A 413 0 SHEET 2 AA6 2 GLU A 416 ILE A 418 -1 O ILE A 418 N LEU A 411 SHEET 1 AA7 3 VAL A 433 ASN A 443 0 SHEET 2 AA7 3 ALA A 447 LEU A 456 -1 O VAL A 453 N ALA A 437 SHEET 3 AA7 3 SER A 483 PHE A 486 1 O ALA A 485 N VAL A 454 LINK C ILE A 57 N MSE A 58 1555 1555 1.33 LINK C MSE A 58 N TRP A 59 1555 1555 1.33 LINK C ALA A 79 N MSE A 80 1555 1555 1.34 LINK C MSE A 80 N VAL A 81 1555 1555 1.33 LINK C GLU A 92 N MSE A 93 1555 1555 1.33 LINK C MSE A 93 N GLU A 94 1555 1555 1.33 LINK C ALA A 173 N MSE A 174 1555 1555 1.33 LINK C MSE A 174 N SER A 175 1555 1555 1.33 LINK C ALA A 190 N MSE A 191 1555 1555 1.32 LINK C MSE A 191 N ALA A 192 1555 1555 1.32 LINK C PRO A 212 N MSE A 213 1555 1555 1.34 LINK C MSE A 213 N PHE A 214 1555 1555 1.34 LINK C GLY A 223 N MSE A 224 1555 1555 1.34 LINK C MSE A 224 N PRO A 225 1555 1555 1.34 LINK C LEU A 228 N MSE A 229 1555 1555 1.34 LINK C MSE A 229 N ALA A 230 1555 1555 1.31 LINK C LEU A 258 N MSE A 259 1555 1555 1.33 LINK C MSE A 259 N PRO A 260 1555 1555 1.35 LINK C GLY A 291 N MSE A 292 1555 1555 1.33 LINK C MSE A 292 N ALA A 293 1555 1555 1.33 LINK C ARG A 409 N MSE A 410 1555 1555 1.32 LINK C MSE A 410 N LEU A 411 1555 1555 1.33 CISPEP 1 PHE A 221 TRP A 222 0 18.09 SITE 1 AC1 4 HIS A 215 PHE A 300 GLY A 312 HOH A 801 SITE 1 AC2 5 TYR A 85 ARG A 87 PHE A 214 MSE A 259 SITE 2 AC2 5 SER A 495 SITE 1 AC3 5 ARG A 87 PRO A 212 ARG A 238 VAL A 239 SITE 2 AC3 5 HOH A 876 SITE 1 AC4 5 GLY A 52 ARG A 53 HOH A 820 HOH A 845 SITE 2 AC4 5 HOH A1057 SITE 1 AC5 5 THR A 21 ARG A 29 LYS A 232 HOH A 853 SITE 2 AC5 5 HOH A1096 SITE 1 AC6 4 GLU A 435 ARG A 492 ARG A 498 HOH A1029 SITE 1 AC7 7 LEU A 97 ASP A 101 PRO A 102 ASP A 127 SITE 2 AC7 7 THR A 128 ALA A 129 HOH A 855 SITE 1 AC8 4 ARG A 472 SER A 477 LYS A 480 HOH A1060 SITE 1 AC9 3 THR A 5 ARG A 11 LEU A 158 CRYST1 146.158 146.158 71.138 90.00 90.00 90.00 P 43 21 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.006842 0.000000 0.000000 0.00000 SCALE2 0.000000 0.006842 0.000000 0.00000 SCALE3 0.000000 0.000000 0.014057 0.00000